Array 1 229449-227980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071955.1 Xanthomonas fragariae strain YL19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 229448 28 100.0 32 ............................ GAGCAATGGGTCAGCATCTTCACTGTCGCTGA 229388 28 100.0 32 ............................ TGACTCGACAGCTCGTGCAGCTGAGAGATGCT 229328 28 100.0 32 ............................ GCCTGGCGCGTCGGTGCAACGAAACTGACGGT 229268 28 100.0 32 ............................ TTGCGCGGCTGGTCCGGATCTACATGTAGCAC 229208 28 100.0 32 ............................ TAAAGCTCTGAATCGCAAGAGGTTGGAAGACC 229148 28 100.0 32 ............................ TCAGAGCAAACCAAATGATTCGTGCAGCGGTT 229088 28 100.0 32 ............................ TATTTCGTCGCAAGAAACAGGAGGATCAGGGT 229028 28 100.0 33 ............................ CATCAAGTTCGTCAATCCGCGCAAGTTCGGCGA 228967 28 100.0 32 ............................ AAAAAGCGCACGCCCACAGGCCAGCTATCGGC 228907 28 100.0 32 ............................ TAACTGCAAAGGCAATGCTTTCGCAGTCATCA 228847 28 100.0 32 ............................ GTGAAGCGACGGGATCGGCTGTGATCACGCCA 228787 28 100.0 32 ............................ GCCCTCGAAGACTTTGCGCTCAGCAGCACGCC 228727 28 100.0 32 ............................ CGTCTCGACGCACAAGGGCCGTGGCGCGGCTT 228667 28 100.0 32 ............................ GGAGGAGTTGGCCTCAGCGCCTCGTCCATGGA 228607 28 100.0 32 ............................ CGGAGGTCAGCAAATAGTGCACCTCCTCTTGC 228547 28 100.0 32 ............................ CTCCACAAGCACGCCGCGTGCTATTTCGATGG 228487 28 100.0 32 ............................ CCACTCGGCGCAGGAACGACCGGCACCGGAGC 228427 28 100.0 32 ............................ AGCAAGCGCTGGAGCTTGTCGTTCTGCGGCAA 228367 28 100.0 32 ............................ AAAGGCGTGTTCACTGCGCGCACTATCGCCTG 228307 28 100.0 32 ............................ TAAGCCCATCGCGATACCGCCCCCTTGCTGCT 228247 28 100.0 32 ............................ AACAGCTCCGCGCATCTGTGCCGGATGGGGAC 228187 28 100.0 33 ............................ AAAAGGGCCAGGTCGAAGACCAGGACACCTCCC 228126 28 100.0 32 ............................ TCTAGTGGGACTCTTTACAGGGCGCTCTTACA 228066 28 96.4 31 ...........T................ TACCATTGCGCCACGCAGAGCAGACCGATGC 228007 28 82.1 0 A..........TT........G..T... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCCGCCAGTGTGGCCTCCCCCCGGGGGGCGCCTACACCGGGCCAAACCCGACCGATCGCGGCAAACTCGGCAGCAAACGGCATCTGATCGTGGACCGCAACGGCGTGCCCTTGGCAGTGTGCGTCACCGGCGCCAATCGGCACGACTCGGTCGTGTTCGAGGAGTTGATCGACGCCTTGCCGCCAATTGGTGGCAAACCAGGGCGCCCGCGACGTTGGCCAGACAAATTGCACGCCGACAAGGCTTACGACATCGACCGCTGTCGCGCCTTCCTCAAGCAGCGCGGCATCATTGCGCGGATCGCACGCAAGGGAATCGAGCGCAACGACCGGTTGGGCCGTCATCGCTGGGTCGTCGAGCGCACGCATGCCTGGTTCGCAGGCATGGGCAAACTGCGCATCCGCTTTGAACGCCGCATCGATCTCCACTTGGCGTTGCTCTCGCTTGCATGCTCCATCATCTGCTTACGGCTTCTTCCTGGGTTTTGTTAGCCGCTCTTA # Right flank : TGCGACTGGTCCGTCCGCTCTCGCGCTGTATTTGCCACGACTGTCGCGTGTCATGGACAGGCGACCTGCAATGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTAGACCATGCGCGCGTTGGAAAGGCATGTTTGCGCAGGCTTAGCAGTGTACGGCGCATGCCGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCGCTGCGATAAAGCCACGCCGCGCGCATCGCCCGCGCGTGCACTCACTTGCGTCAGTAAAACCCCAGAAACATCGCCACCGCCGATTCGGCCACTTGCGTCTGTTGCTCCGGCGACAGCGGCGGCGGCTGGCCCTTGGCGAGCTGCGGCCAGAACGCGAAGCCCTTCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTCCGGCTCCGCGCTTGCAAGCCGCCCGTCGGCCAACGCAACGCGTCGCCATCGCCAGGTGGGGTTCCTTCCTCCTTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 236867-230350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071955.1 Xanthomonas fragariae strain YL19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 236866 28 100.0 32 ............................ AAAGAAGCTAGAGCCGTCCTTGAGAAGCTGCA 236806 28 100.0 32 ............................ ACGGTTCTGATGAGATGGAGGGCTTTGGTAAG 236746 28 100.0 32 ............................ GAGGAAAAGATCCTTAGGCGGGCCGTGAAAGC 236686 28 100.0 32 ............................ TTTGCCGTAGCCGTAGCCTTTGCTGTAGCCAT 236626 28 100.0 32 ............................ TAGTACGGATGACCTAGTAGCCTTGTGGAAAA 236566 28 100.0 32 ............................ TACTAAATGCACACCGCCGAGACTTAGAGATC 236506 28 100.0 32 ............................ TAACCCTTTTGCAGGTCTTTACACTTCTGGTA 236446 28 100.0 32 ............................ ATTTCGTAAGCAATTGCGGTCGAGGCTGCTTT 236386 28 100.0 32 ............................ ACTCTCGGTGCTGGTAGCGTTGTCCTCGTTAA 236326 28 100.0 32 ............................ TGCGTAGACCACATAAATGGTAACCCCGGAGA 236266 28 100.0 32 ............................ AAGCACCCAGGATGGATTGCTAAGGCAGCTAA 236206 28 100.0 31 ............................ CAGGGCTCCCATGTTGAGCAAGGCACTGCGA 236147 28 100.0 32 ............................ CCGCCACGGCTTGCCGGCCGCTCTGCTAGGAA 236087 28 100.0 32 ............................ TGCATGGTCCAGAGGGATGTGTAAAAAACACT 236027 28 100.0 33 ............................ TGCAAAAACGCGTGCGGTAATTGAAAGAAACCC 235966 28 100.0 32 ............................ TCTAAGGTCGGCTCCTCGCAACGACACCCCAG 235906 28 100.0 32 ............................ AGGGCGTCACCTTGGAAGAAAAACACGTTGAA 235846 28 100.0 32 ............................ TGGTGGAGCAGAAGTAAAGGGGATTTTTATGA 235786 28 100.0 32 ............................ AGGTCCTTAAACCGGAGAGAGACAAAATGAAC 235726 28 100.0 32 ............................ GTCCAGGTTCGCCCCCGCCCAGTCCGCATGAC 235666 28 100.0 32 ............................ AAAGCCATCACCGTCGCCATAGCAGTAGCCGT 235606 28 100.0 33 ............................ CGCAATAGCCCTAGAGAACCCCGTTTGCATCAT 235545 28 100.0 32 ............................ TGTATTTTCTTGTTGCCCAACTGCTTATCCAA 235485 28 100.0 32 ............................ GCAATTAGCTTTGTAAGGCAATACATGATTCG 235425 28 100.0 32 ............................ GCTTTGGGATAGGCCCCGCACACATTGCTGCC 235365 28 100.0 31 ............................ TGTGCTCAGGGGAATAGTTGTAGCCGTCATT 235306 28 100.0 32 ............................ AGAGACATGGTTTGTTCGTAGTGACATAGAAA 235246 28 100.0 32 ............................ CCCTTGATCTGTGCTTGGGTAAGCCTACTCAT 235186 28 100.0 33 ............................ AAACATGATGACAGATGGAAAACCTGCCCCCGG 235125 28 100.0 32 ............................ GTGGCCCGTGGGGGGTACTTCGTACCGGACAG 235065 28 100.0 33 ............................ GTGCGCACCTACACTTACACCCACATACAAAGT 235004 28 100.0 32 ............................ AGGAAAGCGGGATACGAACGCCCGTTTAACTT 234944 28 100.0 32 ............................ GCTGCAACTTCCCCGACTCTAGGCAACCCTGG 234884 28 100.0 32 ............................ TGGCGGCGTCATTGCGAGTTTCACAACATGAA 234824 28 100.0 32 ............................ CTTTGCTATCTGCTCATGCAATAGGTGTAGCT 234764 28 100.0 32 ............................ AGCACCGGAGCCCATCGGAAACTGCTGAAGCC 234704 28 100.0 32 ............................ TGCTACATGAGGGTGTTCCAAATGCCCTTGCC 234644 28 100.0 32 ............................ TGCTCAACAAAGTAGTTTGCCCAGCTTGTACC 234584 28 100.0 33 ............................ GATATGCAAGCGCGTTCATGCGGCTTCCCACTT 234523 28 100.0 32 ............................ CTAACTCCGCAAGCCGTGCCTTTGCATCTTGG 234463 28 100.0 32 ............................ GTAGCCGTAGCCGTTGCCGTCGCCGTAGCCGT 234403 28 100.0 32 ............................ GGTTACGGAATCCCTAGGGAGGAACTATTACT 234343 28 100.0 32 ............................ TGTGGGTCCCTATTGATGTGATCAATCTCCTC 234283 28 100.0 32 ............................ CCCAGGTACGGGGTGAGAGACATCGGGACTTT 234223 28 100.0 33 ............................ CACTGGTGTCACTTGCATAGCCGAAGAAAACAC 234162 28 100.0 32 ............................ TGCACAAGCAATTTGTGGGGCATGATGACATC 234102 28 100.0 33 ............................ CTATTGAGAAACTTACTATGAGCAAGCAGTGCA 234041 28 100.0 32 ............................ GTCACCAAAACCGTAGCCGTCGCCGTCGCCGT 233981 28 100.0 32 ............................ CAAGGCTGGTACTCGCCCAGCCTTGAGTAGTG 233921 28 100.0 32 ............................ ATTCATAGACGGGGCGCCACTTTGCGCGGTAG 233861 28 100.0 32 ............................ AATATGGGAGCCGGTGCGGCTCTAAATCGCAT 233801 28 100.0 32 ............................ ATTTTGCGCGGTAGGTCGATTCGTCGCGCCCT 233741 28 100.0 33 ............................ AGTCACTGCAAACTCGCTCTTGTATTCCATGTT 233680 28 100.0 32 ............................ TCTATCGATCTACCGTTGCCGGAAAACAAGGA 233620 28 100.0 32 ............................ TTGATCTCAGCCATCGAAGACTCAGACAGCGA 233560 28 100.0 32 ............................ TTGACTTTTCCGACGCTCTGCGCGCAAACAAG 233500 28 100.0 32 ............................ TCACCCGTGTGCGCCTGGGTCGGCGACATCAT 233440 28 100.0 32 ............................ GTTGCGCTTGGTCAGCCGTGAAGCGTTGTACG 233380 28 100.0 32 ............................ GCTTTCCGAGCTCTACGATCTTCTCGCAGAAC 233320 28 100.0 32 ............................ TCCCTCGTGACTTGCGTCAATCGCATCTCCTG 233260 28 100.0 32 ............................ ATCGACACGCATGGCGAACTCGCGCTGGCCGC 233200 28 100.0 32 ............................ GGGTCTGCCGGTGGAGCCGCCACCTTGCTGAG 233140 28 100.0 32 ............................ AGCTCGATGCGCTGTCACCACTACGGGGCGGC 233080 28 100.0 32 ............................ ACTCGAAAGCTCGTGAAGCTGAGAGATGCTCC 233020 28 100.0 32 ............................ TTCAGGCCCTTAGCCTCCCGGGCGTCTTCATC 232960 28 100.0 32 ............................ TACGTCCAAAGTCAGGGCGAGCTAGGCAGGGC 232900 28 100.0 32 ............................ TTGTCGAATCTTTCCATTTGTCGGGACGCGAA 232840 28 100.0 33 ............................ TCACCGCCTCAGCGGACTTGAGTTCGTATTGTT 232779 28 100.0 32 ............................ CAAAACCGTAACCAAGGCGCCCGCACCAGTTA 232719 28 100.0 32 ............................ TTAACGTCCATCCGCCACGGCCTGACAAGCTT 232659 28 100.0 32 ............................ TGCTGCTGAGCACGCAACTGCTGTTCAAGCTG 232599 28 100.0 32 ............................ GATGAACTCGCGCGCGCTCGTGTGCTGAGACG 232539 28 100.0 32 ............................ TTGATTTCCTCGCCTGTAGGCTGGGTCCACCG 232479 28 100.0 32 ............................ TTGCCTTGCAGTCGAACCTTGACGAAGCCAGA 232419 28 100.0 32 ............................ TTGGAGGAGCGCGAACATTGGTTCACGCCCGC 232359 28 100.0 32 ............................ TTGCAGTTCGACATGGCCGAACATTTCGAGCC 232299 28 100.0 32 ............................ AGCGTCTTCGGGCCTTGAACGTGACGATCAGC 232239 28 100.0 32 ............................ TGGTGCGTGTGGCAAATTCTCCGACCTGCACA 232179 28 100.0 32 ............................ CCACGATGGTGCGAATCACGACAAAGTGTTCA 232119 28 100.0 32 ............................ TCAACGGCACCCGGTATCTCCTGCAGGCCAAG 232059 28 100.0 32 ............................ GCCCACGTTGAGGAGTGATCCATGCAACTGAC 231999 28 100.0 32 ............................ TGTTGGCGTGCTGGGCGGTAAAGCAGATCCGC 231939 28 100.0 32 ............................ TTCACAGCCGCTTTCTCAGAAGCACGGTTGAT 231879 28 100.0 32 ............................ ATCAAGTAGGTCTGTCCAACATCGCCACTCTG 231819 28 100.0 32 ............................ TGGCTCCGCCAATTCGTCTTGGCGATGTGGAA 231759 28 96.4 32 T........................... AAGGGCAACTAGCGGCAGCTACGCAAGCATGC 231699 28 100.0 32 ............................ AATGCGTCTACGGTCCTTCTCCATGCGCACGG 231639 28 100.0 32 ............................ ATGTGCTTCGCTGCGATCTCCTCGATCTGGTC 231579 28 100.0 32 ............................ TGACACGCCGGAAGCCAATCATCGGCAAGAAA 231519 28 100.0 32 ............................ TGTCGCAGCCGTATCGCAAAGCGGCCGATGTT 231459 28 100.0 32 ............................ ACTGCCCTGCGGGCCTCTCACGCCTCCGGCCG 231399 28 100.0 32 ............................ AGCAGCAGTTCTTCGAAGGTGAAGGGATCAAT 231339 28 100.0 32 ............................ CCGACGGCGACGGGCAGCGCTGCGCGCTGGCT 231279 28 100.0 32 ............................ TTGTAAATGGTGCGAACCAGACCGGCACTTCC 231219 28 100.0 33 ............................ TGATAATCAGCGGGGAAGCGTGCGGCCATCGAT 231158 28 100.0 32 ............................ TTGCGGGCGTGCGCTCTTCGGAACGACGACGA 231098 28 100.0 32 ............................ AGGCATCGAACTGCTCGGCAGCAGCAGGCTTG 231038 28 100.0 32 ............................ GGGCAGTTCAAGTGCAGATCAAAGCTCAATGG 230978 28 100.0 32 ............................ ACTCTGTTCAGTGATAGACAACGGAACAACTT 230918 28 100.0 32 ............................ GATGCGGTCTGAGCGCTTCGCGTCGCTCAATG 230858 28 100.0 32 ............................ AAGCCCTCGAAGACTTTGCGCTCAGCAGCACG 230798 28 100.0 33 ............................ TACGGCACATCTGCAATCCCCGGCGCGTACCTT 230737 28 100.0 32 ............................ GATTCGAATTATCGGCGATGACGGCGCAGAGA 230677 28 100.0 32 ............................ AGCATTGCGTCTGCTCCAGCTCACGCCTGACT 230617 28 100.0 32 ............................ ACTGTGCTTCGTACCCTGCAATCGACTCAGCG 230557 28 100.0 32 ............................ TCGGCCTGGCATATTCGACATGTTGTCGGAGT 230497 28 100.0 32 ............................ AGTAGCAGGATCGGGATACGCGACGAGTCGGC 230437 28 100.0 32 ............................ CGAAGAACTCTTGCGAAAGCCTCTGCCGGTAC 230377 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 109 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTTGCAGACGTTGATGGCGAACCCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCTCCTACCGACACCCAGCATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGCCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCCGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCTTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTACGGCCTGAGCCAGGAAGCGACGGTGCCCTGGTTCTGACCCTTTTTTCCGGACAGAAAAAGGCCGCTTTAGAATCAACCACTTGGCAGGCACCATGCTTCAAAGGGTGCCTGCCCTGTTTTTTCGGTATTTCTTTTATTTATCAATGGATTGGTGAAGTGCTGATCTT # Right flank : AGACTTCAAATTGCTCAGCAGCAGCAGGCTTAGAGCGTCTAACAAAACCCCTTGAATCTTGTCTCGCCGGTGGCAAAATTGCGGACATGACACGTCGCAAAGAGATCCCCATTGCGCTGTGGAAGCGCATCGAGCCGCTGATTCCCCAAGTGAAGCGTTCGCCCAAAGGTGGACGGCCGCGTATCAGTGATCAGCAAGCCCTCAACGGCATCGTCTATGTCCTGCGCACGGGCGTGCCATGGGAAGACCTGCCTATGGAGCTGGGCTATGGCAGCGGCATGACCTGCTGGCGCCGGTTGCGTGATTGGCAGGCCGCCGGTGTGTGGCATCGTCTGCACAATGTGTTGCTGACCGAACTGCGTCGCGCCCAGAGGCTGGATCTGAGCCGAGCCAGTCTGGACGCCGCCAGTGTGGCCTCCCCCCGGGGGGCGCCTACACCGGGCCAAACCCGACCGATCGCGGCAAACTCGGCAGCAAACGGCATCTGATCGTGGACCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //