Array 1 39617-38185 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWX01000016.1 Escherichia coli strain MOD1-EC6314 MOD1-EC6314_16_length_109374_cov_39.1959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39616 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39555 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39494 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39433 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39372 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39311 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 39250 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39189 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39128 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39067 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39006 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38945 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38884 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38823 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38762 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38701 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38640 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38579 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38518 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38457 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38396 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38335 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38274 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38213 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66321-65316 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWX01000016.1 Escherichia coli strain MOD1-EC6314 MOD1-EC6314_16_length_109374_cov_39.1959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66320 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 66259 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 66198 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 66137 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 66076 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66015 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 65954 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 65893 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 65832 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65771 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65710 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65649 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65588 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65527 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65466 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 65405 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65344 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //