Array 1 29479-27740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVAU02000047.1 Pseudomonas aeruginosa strain PABL103 NODE_47_length_48193_cov_61.5248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29478 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 29417 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 29356 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 29294 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 29233 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 29172 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 29111 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 29050 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 28989 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 28928 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 28867 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 28806 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 28745 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 28684 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 28623 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 28562 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 28501 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 28439 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 28378 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 28317 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 28256 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 28195 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 28134 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 28073 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 28012 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 27951 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 27890 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 27829 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 27768 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39778-38651 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVAU02000047.1 Pseudomonas aeruginosa strain PABL103 NODE_47_length_48193_cov_61.5248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39777 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 39716 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 39655 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 39594 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 39533 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 39472 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 39411 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 39350 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 39289 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 39228 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 39167 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 39106 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 39045 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 38984 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 38923 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 38862 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 38801 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 38740 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 38679 28 79.3 0 A..........A..C.....-..A....T | C [38670] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //