Array 1 489922-489522 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000002.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 489921 36 83.3 37 AC.T....TAT......................... TTCATTCGGTGCAATAACTCTTCTTTATCAACATTTC GG,TC [489903,489906] 489844 36 100.0 36 .................................... CCTATTTTCCCGACTTGCACAAAATAAAAGCTACCC 489772 36 100.0 35 .................................... TATGCGCGCTTAAACCAATACCAGGCACTACTCGA 489701 36 100.0 35 .................................... AATTCAAGTAGTGGCGCCGAATCTAATATTTTAGC 489630 36 100.0 35 .................................... TTGAATTACAGGCACAACTTTGCCTGCGCGTACTA 489559 36 91.7 0 ..............................T...CT | TA [489530] ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 95.8 36 GTGATCAACGCCTTACGGCATCTAAGGTTTAAACAC # Left flank : TGCTCTCGAATCTCATCCCAATTAATTACAGCGACCCAAACATTTTCTTCGGTAGAGTACCTAACAATTCCATCAACTTCTAAATCTTCACTGTATAGTGTTAATTCTTGAGCATCTCGCAGCCAAATTTTTTGGAGAGCTAAATCCTCAATCCTTCCAGTACAATTGAGACGTAAGCGTCCTCGAGTATCAGCGTTGTGGAAATCAGCAAAAACTCTTGGTTTATTCATAGTCATAAGCCTCTAATTTAATTTAGCTGGGTTGTAAATAGTAGGAGTTAGTAGATTGCTAATTTGTTGTGGTGTTAAACCAGTCAATGTAGCATGGTAAGGACTTCTACCAGAAGTACGAATCACATCACCACCTATAGCTCGAATTTCCCCCACTGTCGTGACACCTACTTGCCCATGAGGAATTTTTGCTGCTAACTCTCCTATAGATAATCCTATCGCGCTCTCCACAGAAATTCCAGTTACGCCAATAGGGTGAGTTCCAACAGC # Right flank : TAGATACCGTCAGGTGTTGATCACTTGCACGGCGCCAATCGTAGAAATTTCCTTTGGATATGTTTTAACCTTAGATACCGTCAGGTGTTGATCACCAAATCCAAGAAAAAACAAAACAAATAGGTGCCATGTGTTTTAACCTTAGATGCCGTCAGGCGTTGATCACGTTTTTATCGGTACACCACTTATGCGCGCAACGGCGATGTTTTAACCTTAGATACCGTTAGGTGTTGATCACGTTATAAATATTTTAATCTTTAATGAAAGTAGTAGCTGTAATGCTGCTCACTACTGTTTAACAACTATCAATTTGATTTACTACCAACTCCTAACTCTAAAAATTTAGTCTTCAAGTCTTCTTCACTTTCTCCGCAGTAATAATATTTCTGTTCTAGTAAATTGCTTAAGTAATAGCCATGCTTCCAAATAAAAAATATACAAAATTTTTTTGTAGGGTGGGCATCTTGCTTGACCTATGTATTAAATAGATTAATTTTTCT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAACGCCTTACGGCATCTAAGGTTTAAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 494531-495147 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000003.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 494531 37 97.3 33 ..........................A.......... ACAGCTAATTTAACTTTAAGTACAATTCTTGTT 494601 37 97.3 39 ..........................A.......... GTACTAATGGATGAGTACAGTGTTGATAGAGAATTGAAA 494677 37 97.3 41 ..........................A.......... AGGCATTGTTAGTAAATATCAGGTTCGTGACGCGATTGCCG 494755 37 97.3 34 ..........................A.......... CGCTTTGCGCGCACTGCGAACACCAGCGTTGCTC 494826 37 100.0 34 ..................................... GTGGTACTTCTTTAAGATTAAATGCTGTCAATTT 494897 37 100.0 34 ..................................... TTGTGGCTATGCTCGACATTGGGCGCCAATCAAG 494968 37 100.0 33 ..................................... TTTCCTAGCGTAACCACTTCTTCAAACGTAGTC 495038 37 100.0 36 ..................................... TTGGGTAACGTGACTTCGACCGGGTAGCCAGTAACG 495111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 98.8 36 ATTGAAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : TTAATGGGACTAATATACGACCTCTCAGGCAAACGCCAAGTTAAAAAGACTAGGAAAAAACAACTGGCGCCGTCCTAGGCAATATTAAAAACTAAATTAAACATCTCTTGTGGAACGGGCATCCCTGCCCGTTTCATATTCAGGGCGGGCAAAGATGCCCACCCCACCCCACAAGAAAATTTTTGCTCACCAACAAAAATCATCTAGCATTAGCATATATATAGATAAAAAATTTGTTCGTCTCTACGTATTTATCGTCTTGAACTTTGTATCATGCGCGGAGGGGTAGGTGTGGAAAAAGAGGTTTCAACAAAAATCGCTGAACCCAAGTCTCCACAAGCATTTGCCAGCTTGAAAGAAAAAAAACATCCGCGCACCTTATCCAGAGCGGCTTTCAGCGATTTTGACCTTGCACAATCAACACTTCTCATGCTAAAATTGACCCATCCGCGCAATCGCACCTTGAAAACTACATATATCAACGCTTTCAGGCGCCTGCT # Right flank : CAGGTAAAGCCGCAGCGGGTGGTATTGCCTACAGTTGTTTATTTAATATTTATACGAACAGATGATTTGAATTTTTTCAAATATATTTAAAATTGTAATATTTATTAATTATCTCAATTATTTGACTTTCAATACATTCTTGCTTTGTAAATAAAACAAATATAAAAATTATAATTTTCTGACATAAATGGGTTTAATTGTTATATTTATTACATGCGATTATCAAAATACAAGTTTGAAATATGTAACAAGTATAATAAAGCACGCTTAAGATATTAATAGTTTTTACCGGGTTTTACCAATATGAACACGAGCAGTCCTCGTCACTTGCCGCTTCCCAATCTGCAAACTCTTTAGTCAGTTCAGTCGAATTGTGCCCAAGCATTGTAGCCAACAGTGCTACAATCTCGTTACTTATAGAATTCCCATGTGCTTGTGCTTGTTGAGCAAGAGCTTGATATAAATCTATTGGCAGCGTGACTTGGGCATCAATCGTTTTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : ATTGAAATTTCTCTTACTCCCTAATAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 337016-336473 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 337015 37 100.0 34 ..................................... GAATTTTAAGATTCGACAAATATTCCAGCCTTTG 336944 37 100.0 35 ..................................... AAATCTATTACATTCACCGCTTTTGGGTGTAGTTT 336872 37 100.0 37 ..................................... GCAGTAGTCAATGCTTTAGTAGATTATCAAGAAAATC 336798 37 100.0 34 ..................................... TCATTACCAATTCAAACAAACTCTAAAATTTCAT 336727 37 100.0 35 ..................................... TTCCTATTTTCCCTACTTGCACAAAATAAAAACAC 336655 37 100.0 35 ..................................... CTTCCCCAACAGATGCAAGTCAATTAAGTTTGTTT 336583 37 89.2 37 ................................TTCG. CTTGGTTGAACAACGGGCATCTGAGGGAAAACGTTTA 336509 37 89.2 0 ................................TTCG. | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.3 35 ATTGCAATTTCAAATAATCCCTTTAAGGGATTGAAAC # Left flank : GATTGCATTTTTCCCAGCTTTTTTAACATCCGCACAGAAATTGCGAGTGACTCCCGCAGTAAATTTATCGGTTGTGTAGGGCAAGTAACATATAAAATTATGGGAGAAGTTGAGCCAGAAGTCATCAAGCAAGTAAACGCCATAGCTGATTTTGCCCTATACGCAGGAGTCGGAAGAAAGACACCAATGGGTATGGGAATGGTACGCAGGCAAACTAACTAGGCGCTATTACGCCTACTTTTCCCCACATTACCGCGAACCATAGGGTGTTTTTTTCATGTAACGTCAATTTATGCTCGAAACGCTTATCTTGTATATATTTGAAGAATTTGGCGCCTAATACAGGTTCGCGGTAACTCTAAAACCCTTATCAATTAAGCATTACACCAATTTTAGCTTATGCCAATCTTGACATCTCGGCGCCTGAAACGCTATTCTTGGTCTAGGTTCGCGGTACAGCACCTTGAAAACTAAATACAGCAAAGCTTCCATATCGAGCC # Right flank : CTATACAAATACACCGTAGACAACCAGCACTTAAAAGTAGCACTTTACAATGGCAGTAAATTTATAGGTTGTGTTGGGCAAGTAAGCTATAAAATTATGGGAGAAGTCGAGCCAGAAATCATTAAACAAGTTAACGCCATAGCTGACTTTGCACTATACGCAGGAGTCGGAAGGAAAACACCAATGGGAATGGGAATGGTACGCAGGCAAACCAATTAGACAGCATTTTGGCTAATTTTTCCCATATCACCGCGAACCATAGGGTATTTTTTAGATAGAACGTCAATTTATGCCCGAAACGGTTACTATATAATGATTTCCTGGTTCACAAATTAGTTAACTGTTATGCCCCATCGTATGACTTGCCTGTGATACTAAAATACCGCTCTGTGGCAGAACGGTACTAATGCTGCTTACTCATACTGGTGGTAACTGTTGTTTGTCACCGATAACAATAATAAGAGTACTATTGAATACTTTGGTACTCGCTAATTTATTCA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : ATTGCAATTTCAAATAATCCCTTTAAGGGATTTTCGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 341601-340478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 341600 37 100.0 35 ..................................... CTTATTTAATAGGTATTCCCAATTCCCTTGCTCAT 341528 37 100.0 34 ..................................... AAGGAACCACATAAGCGAGCAGCGTGAGAGGGGT 341457 37 100.0 35 ..................................... TCTTAAGTGTTGTTTAAACCTATTGACAATGTATG 341385 37 100.0 35 ..................................... ACATTTCAAAATAACGGCTCAACAATCAGCCACAG 341313 37 100.0 34 ..................................... TTTACAAATATCAGGATGCCATTGAGAAGCTAGG 341242 37 100.0 36 ..................................... GTAGAACCACAGCATCAACATTCCCACTAGTCCCGC 341169 37 100.0 33 ..................................... CGGGAATCATATTATCGAGCATACCTCGGTCGG 341099 37 100.0 34 ..................................... TTTCGGCGTCTTCTGCGAGCGCAACAAAATATTC 341028 37 100.0 34 ..................................... AGAAAAAATGGTTTGATATTTTAGACGATATTCA 340957 37 100.0 38 ..................................... CTTGAAAAATCTTCTGTTCACTCAAATAATTTAAATGA 340882 37 100.0 37 ..................................... AGAACACCGTATGAACACACGCGCTAACTTAATTGAT 340808 37 100.0 35 ..................................... ATGCCAATTTTGATGGCTACTTGCTCTTCAGTAAT 340736 37 100.0 37 ..................................... ACCTGAAAAAATCGCATCGACCAAGGCGCCTGCCGCG 340662 37 100.0 39 ..................................... ATTCAAGAAATAACCCAAGACATATCCCAAAAACCTAAA 340586 37 100.0 35 ..................................... ATTTTATAACGCGCGAAAGCGTCGGTATTTGTAAA 340514 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 35 GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Left flank : TTAACAGAAACTCAGTACGCCAAATTACGCTCACGCTTATCCAAACTAATAAAACCAAAAGAAGACAGCATCCGTTTTTACTTCCTTTGTCGTTGCTGCCAAGGTAAAGTAGAACGTATAGGTGGAGAAATGCCAATAGATACAACAGTATTCTTCGCATAAACACTTCTGCCTCTTGTGGAACAGGCATCCTTGCCTGTTCAAAATGTAAGATATATTTTAACCACAAGCTCCATAATTTTCACTACAACACCGCGAACCACAGGGTGTTTTTTAAACGCTTCATTAATATAAGGCTGAAACACTTACCCCGTCCAGCATCGAAGCATTTTAACCACAAAGTAGGTTCGCGGTAACTCCAAAACCCTTACCAAATAAGCATTACAGCGATTTTGAAACATGGGCGCCTTGACATCCCAACCTCTAGAAAGCTATTCTTACTCTAGGTTCGCGGAACTGCACCTTGAAAACCAAATACAGCAACGCTTCTACATCGAGCC # Right flank : TTGAAACGCATGAGTGACATTAATATAATATAAGTGTGTTGTTTAAACTTTATTCAAGTAGCCGCTTAATCATTTACTATATCTGGCTCAGGATAAGATTTTATATTCTAGTTCTTATTTGTAAATGCCCTCTTAGTAATAATGCTGCCAGGAATGCTCTTGAACAACTATCAAAACTGCTCGAAGGTATAGAGTCAAAACATCCATACTTATAATATTTAGGATTTAGAAGTTAAATCACGCTTTACAGCTTCGCAAATAATCCTTCGTAAATATTTGACTCGCTCCTCTGGCGCCAATGAGTGCAGCATATCATGAACACTTTGGGGCAACCGTAAACCTGTTACTTGCTTTGCTAAGGGTTCGTTAATCCAATCCTCAATATAGCCTTTGTTTTGTTGCTCGATGAACGCTTGTGTCTGTTTAGGTCTTGGGTTGGGCATAAATTCATAGTAACGTTTGTTCTGTACACATTATAATTCGCCAGAATTTTTCTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 1182023-1181041 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1182022 36 100.0 35 .................................... GTTGTTGCTTCGTTGCCTAGTCCAGTCTTTGCACC 1181951 36 100.0 37 .................................... TTAGCACCATCTGAAGCGAAATCCGCCTCTGAGTCTA 1181878 36 100.0 39 .................................... CAATGTTCTTGATTTTCATGATACAAAAGATAAGAAACT 1181803 36 100.0 37 .................................... TGACCCTTCCCAAAAGAAGGAATCCATGTCAATACAG 1181730 36 100.0 42 .................................... AGCAGCAGATATACCATCACTGGATGCCGTGCGCCCAAAAGC 1181652 36 100.0 32 .................................... GTGCAAAGGTATTTTGTACCTCAAATTCGTCT 1181584 36 100.0 37 .................................... CTTTTGTTTGATCTTTCTTGATTTTATGTTGGATTTC 1181511 36 100.0 35 .................................... TTTTTCAGAAGATCAAATCAGAAAAATCGGGACAA 1181440 36 100.0 37 .................................... CCTAATCCAGCGAATGCGGAGGCGAAGTATGCAGCTC 1181367 36 100.0 37 .................................... TTTTAGCTTCTGCTTTTTGAGCAGGAGTCCAATTTTC 1181294 36 100.0 39 .................................... CATCAGTCAAAGTAGAACAAACTCCAAGCTGGGCAAGGG 1181219 36 100.0 40 .................................... AGTTCTTCTTCACGAATTGCAAAAGCACCTAATCCTCCAC 1181143 36 100.0 31 .................................... TTGATGCCTCAATTACTTTTGCGCCTTCCAG 1181076 36 77.8 0 ...............G............GGACTTC. | ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 98.4 37 CTTTACCGATTACTTAAAATCGGATTAGTTGGAAAC # Left flank : GAGTCAAATTACAAGAAACCCTAGCTACAGTAACAGGTTTATTGAATGAATCAAATGGCGACACTGCAATTTTACGGCAACATGGAGGAATACAGTACGACAGATATGTTAACAAAGACAATATTGACCATTTTCGCGTAACCCAAGATACGCGCGTCAGCAACACCATCTCTCAGGGAAAACTAATATTACGTCGCTACGGTCTAGAACCAGAAGTCAATAATAACCCTTAAAGTATGTTGACAGCGGAGAACAAAGGCGCCTAAGTATTACACCATCTAGCTTTCAGCATTATTAAGGAGATTTTGTAACATGGTCATCTACACACTCCGCCAAATCGCTCAAATGCCTATTTTTTCGTTGGAGTGTGTCGATTGCTTGCTGGGCAAGGGTTTGAAGTATGTGTTTTGTACAATTTTTCACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTAGCGCCTGAAACCCTTACTGGGCAAAGTCTCCCAGACGACCT # Right flank : AAATAATAAAATATTCACTAATTTCTTGTGGGTGGGCATCCGAGCAAACACCCTTGTAATGGAACGGGCAAGGATGCCCATTCCACAATATGGAGAATTAATTTTTTGTAAGTCCCTTAGTAGCTTCTTCCCATTCCTGATAAGCTTTTGATACTATCATCTTAAACTCCAAATCTTCAAAACCGGATTGTGGTGCTACATCTATACTAATTTGCCAAGTCGATAATAGGCGCAGTGCCTCGTTACGTTGATTATCATTTTTTTCCAAACTCAGAACTTCTTTTACAGCTGTTCCTTGGACTGCACCTCGTCCAAAAAGCCTCAACCACCTTGTTTCTGGGATTTTAGGCAGTTTGTTAACTGATACAAACCTTGTATGATAGCCTTTTGAGGAAAAGTATATGCCGCTAACCTCCTAACTTGCACATTCTAAAATCCTATATATAGCAAGGGTTTCAGAAAGATGTGCAAGTCCTATATTTTACTGGAGCGCGAAGGGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTACTTAAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 1197663-1196394 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1197662 36 100.0 34 .................................... GAAAATGTTGCCACCGAAAGCTGGCTCTGCAATT 1197592 36 100.0 34 .................................... GTTTGCCCTTTTTTGTTCTTGTACTTTACCCTGA 1197522 36 100.0 40 .................................... ATTTAAACTTACTTTTTGGGGAAAGCTTGACGCACCGAAG 1197446 36 100.0 39 .................................... TTTGCATTTTTTCTCGCTTCCACCTAAAGCGGAAACCGA 1197371 36 100.0 37 .................................... CACAATGAACGCTACTTTTAAGCCTTCCGACATCAAT 1197298 36 100.0 36 .................................... CTTCATCTGGCAACACAAGCATACACCACTCACCGA 1197226 36 100.0 39 .................................... CTTCGCCATCCTTTCCGCGTTCGTCGGAAATGATGGTTT 1197151 36 100.0 37 .................................... CCTGCTTCTTTAGAGGCAGTATCTAACAGATTATAGG 1197078 36 100.0 33 .................................... GAATTGAATGTTTCCGTATGCTTCACAGTAACC 1197009 36 100.0 39 .................................... AAAATTTAGCTTCACTAAGCTGTTCCTCATCATTATAAA 1196934 36 100.0 36 .................................... GTGAATAAACACCCAGTCACCTTCCTCAAATCCTTC 1196862 36 100.0 37 .................................... CTTGAGGGTTGCTTTGCACATAATTCCGAGCATCAGC 1196789 36 100.0 38 .................................... TTTAGTTAGCTAAGTTGGCAAAACTATTTAACGAAAGG 1196715 36 100.0 39 .................................... GGTTAGTATTCATGGTCGTGAATCAATAAGATAAGTGAA 1196640 36 100.0 32 .................................... TTGGAGCAGTTCCATTAAGCAGTCAAAGCCAC 1196572 36 100.0 36 .................................... GTGAAACCTGCGCTGTTCCTTCAGGAAACCAGCATG 1196500 36 100.0 36 .................................... CTTAAGCTAGTGACTTAGGAGAAGAAAAACAACCAA 1196428 35 72.2 0 ............AA.CGT...T....T..-.A...T | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 98.5 37 CCTTACCGATAGGTTTAAATCGGATTAGTTGGAAAC # Left flank : ACTTTAGCGTGTATAGACAAGATATAAGCCTTCGACGGGCGAAGTGATTGGTGATTTGCGAAGATGTAATTTAAAGCATAAAGTGGCACGAACGTTCTTATCATTATTACTGCGTTATGCTTCGCTAGGACTAGTTTGAGGATAAAATGGCAGTCAATGTAAAAAATAACTCATCAAGTGGCAATGTGCGACTTTATTAGATTCCTCAAAAAGCTATCTCAAAAGTATTGAATATTGACAGCAAAGAACCAACGGGACTGCTAAAGTATTACGTAATCTGGGTTTTAGCATTATTAAGGAGATTTTGTAACATGGTCATCTACACACTCCCCCAAATCGCTCAAATGCCTATTCTTTCGTTGGAGTGTGTCGATTGCTTGCTGGGTAAGGGTTTGAAGTATGTGTTTTGTACAATTTTGCACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTGGTGGCTGAAACCCTTACTAGGCAAAGCCTCCTAGACGAAGTT # Right flank : CACGATACCAAATTCCCGGCTTTTTTAAAAAGTCGGGAATCTGATTTTTGACAAATGATTTAGAACTGCTACATATATCTGAACAATTATGAGGCGCCCATAATTCTTGGTAGAGATGTGATTAATTCTGTCTCTACCTAATTTTTCAGCATATTTAGTTACTTCAAATGTTTTATTTATGCTAAAAAATTGGTCAGAGCTTTACTTTTAAAGAAAATTAAAATATTTAAGACGGTAAGAAAGCAGAAAACTATGTTTACGTTAAAGACTTATGACATGGGAGATGCTTCGTTCCTCAGCATGACATGGGAGATGCTACCCTGCGGGAAAACTGCGTTAACGTTCGCGACTCATAACAGGAGAGATGAAGTTTCTGATGGAAAGAGCATATTCCACCCATAGGTTTTAATAGTAAATAAGAAAAAGCAAACCCAAAAGAAATGGTGGAAGGATATGAGGAATCTTCATCGAGTCATGGTTATAGCAGATTGTGATAATGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCGATAGGTTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 1199578-1198520 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1199577 35 100.0 39 ................................... AAAACAAGCTCCAGGCTTGTCTCTGTGGTTTTCCGAGCT 1199503 35 100.0 38 ................................... GTTGCCACCGAAAGCTGGCTCTGCAATTGCAGGGGAGC 1199430 35 100.0 38 ................................... TCTGCAATTGCAGGGGAGCTAAATAAAACTGAAACAGA 1199357 35 100.0 38 ................................... GTCAAATGTTACTCCCCCTCCTTTTTTTTGATATGCAG 1199284 35 100.0 39 ................................... ACATGCCTGAAGCTCGTGCAGTTTTGATTGAGGTTGCGT 1199210 35 100.0 36 ................................... TTTTCAGTTTTTTGATGATGTTGAATAGAATAGACA 1199139 35 100.0 37 ................................... TTCCCGGTTGCAGCACACGGCTGAAACTTGGGTTACC 1199067 35 100.0 37 ................................... ATTTAGACCGGCAGTAAAAACAGCAGCAGACAAAATG 1198995 35 100.0 35 ................................... TATAAACTTTGTTTTTGGATTTGAGGTATCTTTTC 1198925 35 100.0 39 ................................... TCAGATAAACCACGAGCCTCAACCAACCACTTCAATTCC 1198851 35 100.0 41 ................................... GGTCTGGTCTTTGATTGGTAATATCAGGTGGAAGATTAGTC 1198775 35 100.0 38 ................................... GCAATCAGCGGCGCAAAATGTCTGCAATTTCATGCGCC 1198702 35 100.0 40 ................................... CTGAAATTAGCGATTGCCGCGACGGATGATGGGAGGCTGC 1198627 35 100.0 38 ................................... CTTTAACTTTTTTTGCTGCCCTTCTGCGGAAGCTAAAC 1198554 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 15 35 100.0 38 TTTACCAATTTGTTTAAATTGGATTAGTTGGAAAC # Left flank : TTGCAATGTTAGTAGTAGTTGTGTATGATATTCCTAATGACAAAAGGCGCACAAAATTATCAAACTTTCTAGAGGGTTACGGGCGAAGAGTTCAGTATTCTGTTTTTGAATGTTTTTTAAGTTTGGAAGAAATGCGACAACTTTTTGAGAAATCTAAAAAACTTGTTAAGCCATCTGAGGACAATGTGCGATTTTATTGGGTTTCCCAGGAGGCTGTTTCCAGAGTCTTGACTATTGGCAGTGAAGAACCTGCGGCACCGCCAAAGTATTATGTTATCTAGCTTTCAGCATTATTCACTCCTATTTTGTAACATGGTTATCTACACACTCCGCCAAATCGCTCAAATGCTTATTGTTTCATTACAGTGTGTCGATTGCTTACTGGGTAAGGGTTTGAGGTATGTGTTTTGTACAATCTTACACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTGGCGCCTGAAACCCTTACTGGGTAAAGTCTTCCAGACGACCC # Right flank : TTTATATTTAGTGCTTCAACACTCTCTCAACAATAAAGAATCGTTGCTTTAAGGTAATTAAAAATCATTTCTGTTGTAAATTAAAAGGAGTAGTCATAATGTGGATTCAAAAATTAATTATTTGCTTAATTTATGATTTTTTAGATTTTACAGTTGGGCGCGTTTTATTTCCAATTCCATTTATTGGAGAAATTGTAGGATGTATTATATGTATTCAACTGTTTGGTGAAGATGGAGTGCTTTATGGTTTAGAAGCTATTGATGTAACTGAACAAATTGATGGATTTATTCCTACAGCTACCATAATCGCATTAAAAAACAAGCCAAATTAGCTCAATTCATATTTTGCACTTGTACACTTTAGCGTGTATAGACAAGATATAAGCCTTCGACGGGCGAAGTGATTGGTGATTTGCGAAGATGTAATTTAAAGCATAAAGTGGCACGAACGTTCTTATCATTATTACTGCGTTATGCTTCGCTAGGACTAGTTTGAGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACCAATTTGTTTAAATTGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 6 1438740-1440958 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1438740 36 100.0 37 .................................... CATCAAAGGAGACAAGGTGCGTACATTATTCCATAAT 1438813 36 100.0 35 .................................... CTTTTATCGGCAGTGCTTGTATTATTTAATTCAAG 1438884 36 100.0 39 .................................... GCAATTCATCAGCTTCTTTCTGAGTGATTTTATCGCCAA 1438959 36 100.0 36 .................................... TGTCCTCTTCTTGTTCCCCGCGCCGATGTTCCCGAG 1439031 36 100.0 34 .................................... CCTGAAATTCAAATGGCGATGTCTGGCGAATTAG 1439101 36 100.0 35 .................................... CATTATTGAACCATCATTACGATAGGCGCCATTAA 1439172 36 100.0 35 .................................... GCTACTTTAGTGACACAGAATCGCCAGGAGGTAGA 1439243 36 100.0 36 .................................... TAATCAACGCCCTAAATTGCCAAACTACCGCAAATC 1439315 36 100.0 38 .................................... TTAATCTGGGTTCAATTCCCAGATACGCTATGTGTCAA 1439389 36 100.0 39 .................................... TTCATGCGACTTACTGCTTCATTTGCTTCAAAGATTCCG 1439464 36 100.0 32 .................................... TTTGATGAACGGGACATTTTGATATGTATTAT 1439532 36 100.0 39 .................................... GCGCCACCTGCTGCACAACTTCTATTTCTACATTTAGGG 1439607 36 100.0 38 .................................... AAATTAGCTAATTCTTGTGTCAGTGTTCGTTTTTGGAT 1439681 36 100.0 38 .................................... TATAATTACGCATCGTGGCATTACCTTTAAACACAAAA 1439755 36 100.0 39 .................................... ACCCAAAACTTATGATTAGGAGTAACAAAAAAGTTACTA 1439830 36 100.0 34 .................................... AATAAGGCATAAAACTGAGTAATTTACTAGTAAT 1439900 36 100.0 42 .................................... ATAATAAAACTTGCTGCTATTGCGTTATGCAATCGTTATGAG 1439978 36 100.0 35 .................................... GGAACTTATAGGAAGTGAGGCGCCGGATGATTACG 1440049 36 100.0 43 .................................... CATATAATATTTTTCTGAACCATATATACTTCTAATTTTATCA 1440128 36 100.0 36 .................................... ACTAATCGCCCAAGATTCAGGTAATTCTCGATACTT 1440200 36 100.0 35 .................................... TAAAATTTGTAAACTGAGTTTACAAATTTATGTTT 1440271 36 100.0 39 .................................... GATTTATTCAATGTTATGAAAGGAATTCCATAAACTAAT 1440346 36 100.0 34 .................................... CGATAATTTTACGTTCTTCGGCTTCAGCTTGTTC 1440416 36 100.0 35 .................................... CTTGCTGCAATGGACAAAGAGCGCGAAGTTTATTC 1440487 36 100.0 34 .................................... TCTCTGATGATTGCCACATAACATCAGCTATTTT 1440557 36 100.0 38 .................................... ACTGATGATTTGGCACTTCCCCGTGAAATCCAACTTGA 1440631 36 100.0 33 .................................... TTTATAGCTTGCCTTAAGCTCAGTACTGGTAGG 1440700 36 100.0 39 .................................... GTTGTATGCGTGTGTCAACATAAGCTATAATCCTTTTTA 1440775 36 86.1 38 .........ACA..TA.................... AGGGGCGCCCTCGGAGACGGCGGTTTGTGTAGTGAGTT 1440849 36 77.8 38 .........A.AG.TA.....A.......C.....T TAGAAGGCTGTACAGATAGCGTCAATAATGGCGCTATC 1440923 36 88.9 0 ........C..A..T...................T. | ========== ====== ====== ====== ==================================== =========================================== ================== 31 36 98.5 37 GTCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : ACCGACTCAGCACCCAGCACTCACCACTCACCACTATGTTCCTATACGTCGTCGCATATGACCTTCCCTGCGACAAACGACGCAAAAAAGTCTCAGACCTACTCGAAGGATACGGTTGTAGAGTTCAATACTCAGTATTTGAATGCCAGCTAACCCCTGCAAAAATCAAAGAACTGCGTAAACGGCTCAGTAAAGTTATAAAATTAGATGAGGACAGCGTGAGATTTTACCCATTATCTCAGCACACATTAGGGCAAGTCGAAATCATGGGCATTGGTCCTCCAGTTATTTCGCCTCCTACTTCGACGATTATCTAAATAGTGCGAGCGATACTTAAAACTCCCTCAAATGCCCATTTTCCGTATTATCCCTCGCCGCCATACTGTGTAAGCGTTTCATGGATTTATATCATGCCTTTTAACTCATCTGAAGCACAAATTTTATTATCCCTCGCAAGGCGCCTCTGGACACCTTACACAGCAAGGGCTTAAAATCGAGGG # Right flank : CGCTGTAACTATACCCACAACTTTTCTGGATATGGAAGCATAAGCTAGTATTTAAGTGTCACCTAAAAGATAAAGTGGCCGTTTTTAAAGGATATAGTGGCCACCCCTAGTAACATGAAATGCTTATTATTCCGTTGTCATATTCTGTAAGCTCGCGCATTCAACTCTCTCAAATCCTTTTCCACTATAGGTTTTGGATTGCGGTCATTTTATGCTTTAATTTCGGCCACTTTTTCCTTTAAGTTACACGGAAAAACGGCAATATTATCGTCCCAGTGACAGTTATTGATGGCAATTTTGAAGTGAGCCATCAAGCATTTTCAGTAATTGAGTCAATAGATATAGAGATAGATTCGGATACTTTAAATACTTGTATCAAAAAAATAAAAGAAATTGTACCTCAAGATAATACAAAAGCTGATTTATTAGAAGATTTGATTGATTTATTATATGAAATGTATGATAATTATAATCCCAAATAAAGCAGATAGCATATAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 1648349-1648603 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000001.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1648349 37 83.8 38 AAA......T.....C....A................ ATTAAAACTGCTTATTCATCAGCTTATGAATTTTTATT 1648424 37 97.3 33 ....................A................ TTTAACCTCGCAAATTTTAAATAATACCCCATA 1648494 37 100.0 36 ..................................... GACTTATTTTAGCATCCATAAAATACATCCTATTAA 1648567 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 95.3 36 CTTTCAACCCACCCCTAGCCGGGATGGTTATTGAAAC # Left flank : GTACTGCTTTCAAAAATGAACTCTCCTGGTGCATCTGGTTCATTAGACCAGTAAAGCTTTATTTTGAAAGCAATATTTGTACCTGTAATAGTTCTAAGCTTGCTAGATTTTTTAGCTTGAATTAGATAAACTCCTTCAGCTTCCGTATAGTCAATCTCATATTCGCGTTCTTTGAACCAAAAGACAAGACGTTTTTGAATAGTTGATAAATCTGTATTTCCTGCAAGAAAATAATGTTTACTCATTGATAAATCCAATAGCTATTTTTCTAATAAATAGAATTTGCAGTAATGAGCAGTGCTTTACGACTTACAAAACAATTACAAATTCTTTTATCAAGATATTGCTTGCTGAAATGAATGACATCAGTAATCTTACAGTGAAGCTTAAAATTTTTTTAAGAGTCCTATGCTCCTTTCAACCCTCCGAAGTAACATTTCTCTTAAACTGTTGTTAAAACAGTCATCCCTTTACGCATCTAGTCGCGTTTTAAAATTTTC # Right flank : CTCTGCCCGTCTAGAACCTTACCAGTAAAGCTTTTTCAACACGAATTTGGCGGCGCTCTCAAAAGCATCTTCATTTTTAAATGAAAAAACTAAATTGATTTGCACACCTATCATTAAACTGACTACCAAGTAAAGGTTTTAGGATTTTGGCGGAACTCCAGGGATTTTGCCTCCGCTTCGACACGCCAAAAAAAAATATTTGGAGGGTTCCTCCGATGAAGGAGGTGATTCAGTAGCCACCACTGAGGTAATCCCCACCGTTATGCAACGGTTCAAGCTTTTCAGCTTTACTCTTTTTTGCTGGGAGCGCACCTGTCCCCCTTTAATATGCTTGTATAAGCATTCTCCTTTGTTACTAGAACATTGAAAAATTTTGCTTATCTAAGATTTCAAAGAGGGCGTATCCTGTCTGAACGAGCCAGACAGCAGCTTCAAGAGCGGGCAGCCACCAGGGTCAGAAAGCAAAACGGTCTTCAAACCGTCAAACTAACCCAAATTTA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCCCTAGCCGGGATGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 310-2245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000060.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 310 37 100.0 37 ..................................... TTTTCATATTTAAGTAACATCAGTAATTATACATAAG 384 37 100.0 40 ..................................... AATTTGCTCTTTGGTATGCATTGCGCTATGCTGAATTGCA 461 37 100.0 39 ..................................... TATTTAATGTGAAAAACAAAATCAATTTGCATCATCCGA 537 37 100.0 34 ..................................... TTTTCGAGATTGCAGAAAATCCTGAAGTCTTTGC 608 37 100.0 33 ..................................... AAAGAGAAGAAAAAGTAAAATGTCAGGCGCAAG 678 37 100.0 35 ..................................... ATTATAACTGCACTCTGTGGTGGAAACACAAAACT 750 37 100.0 35 ..................................... AACAGCTTGATTCGCATTATTGCAGTACGTTTTAA 822 37 100.0 40 ..................................... AGTATCGGCGCCTATTGTTTGTCCCGCTGGAAATTTCCCG 899 37 100.0 34 ..................................... TAATAGCTTCGCATATCGCGCGCATCAATAGCGG 970 37 100.0 33 ..................................... ACAACGGGTGAGCAGCTGATAAAACAGAAAGGA 1040 37 100.0 34 ..................................... GGGTTAGGGAAATGAAAGTAGGATACGCGCGCGT 1111 37 100.0 36 ..................................... AACTGATACTCAGAAAACATAGAAGAAATGATAGAA 1184 37 100.0 37 ..................................... GGATTTACAGGATTTGATACTACAGCGGCGCCGAAAT 1258 37 100.0 34 ..................................... ATTTTTAATCGCCTCTGCTTTCTTCATCCCCTTT 1329 37 100.0 40 ..................................... CCCTTCCAGCACAACACCCTTTGTAAGGTCAAGATTAAAT 1406 37 100.0 35 ..................................... ATTTATCGAGCAATTCCTGAATCAAATCTTCCAAC 1478 37 100.0 35 ..................................... AGATATTTTCTCCAAAGACTGCGACAATTCTTTTA 1550 37 100.0 33 ..................................... GGTGCCCAATCTTCTTCTGATTCTTCATCCCAA 1620 37 100.0 42 ..................................... TTCAGCATTAAATTTGATGCCAGAATAAGCAATGCGTTTAAA 1699 37 100.0 38 ..................................... GCATCAATGGGTATTAAGGTGTAAAGACCTTTACAAAT 1774 37 100.0 33 ..................................... TATATTTATAACGAAAAAGATTTAACTGTACCC 1844 37 100.0 35 ..................................... GTTCTTAAAGGTCGGCAAAAGCTAAGGCAAGAGGC 1916 37 100.0 39 ..................................... AACAGAAGAAGAACCTAATAGGTAGCGACGAGGCAAGCC 1992 37 100.0 38 ..................................... TAAGTCCTCAGTTTTATCTAACTTCTGAGCTTAATCAA 2067 37 100.0 37 ..................................... TTGTTTACCCACCAATACAAACATAGTACGCATTACA 2141 37 100.0 31 ..................................... CCTACGCTTTTGAAATAGAAGATTCTAAGAA 2209 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 27 37 100.0 36 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : AGTAATTTACTATATATATAGTTAAAAACAAAAAACAGTAGTACTAAATTCCCTAAGTATTTTGGATACTGAACTTGGTATCATGCGCGGAGGGGTAGGTGTGGAAAAACAGGATTTAAAGATAATGGCTGAATCCAAGCCCCCACAAGCGTTTGCGTCACTGCTATTCAAAAACCATCCGCGCACCTTACCCAGAAAGAGTTTCAGCAATTTTGACTCTACACAACCAACGTTATTCATGCTAAAATTTACCCATCCGCGCAACTGCACCTTGAAAACTAGATATAATAAGCCTTTCAGGCACCTGCTA # Right flank : CATGGGAGTTGACTAACCCCGACCCCAAACTCGGTGCCAAAAAGCTTGTGTCTAAGTAAATCAATATCTTGCCTCTTGGCGTAAGGTTTGGAGAATTTCTATACTGCTAGTAGATGTTTGAGGTTGAGCAGCTCTTAGTGCTGCTTTGGATGTTAATGGGCGACGAGGTGTATTTGACATTGGGGACAACCGAGCAATGGGTTGACCATGACGGATAATAACTACTTCTTCACCATTTTCAACTTGGTTAAGTAGTTCATTTATAGTTACCGATGTATTGTTCGCATCAACTGTTAGCATTAGGATTCGATTTAAGCGTAAAAAATCATAGCTCTATTTTATCAATTTTACCGTAATTTTTAATTGGAGTTAGCGTCAGAGTGCGCGTGTGTCATATCTCAATAATTCTTACTTTGTGCCCTTTGTGCCTAAGAAAGCGGGAAATCCTCGCTCCTTATGTGGTTATTTTCTCTCTGTGACTCTGTGGTAAATATAAAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 240998-240033 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000004.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 240997 37 100.0 34 ..................................... TTCCTTACTTGATAATTTACTTTGACTCTTTTAA 240926 37 100.0 35 ..................................... ACTGAAGCTTTGTAAACTACTGCTGGTGAAGGGAG 240854 37 100.0 33 ..................................... CAACTGCTATTTTTTTTCGTCAATAGTAGCATT 240784 37 100.0 34 ..................................... CTAAATCTCTAGAAATTTCTTGTAATTGTCTCCA 240713 37 100.0 33 ..................................... TATACGAATATGAAGTGATTGGTGCATGTTGCC 240643 37 100.0 34 ..................................... TGGAATGATTGAAGTGTTCTAAAGCATTCTAGAG 240572 37 100.0 33 ..................................... TCTCTGCTGCTTCTGAGCAAAGACTACAGGATT 240502 37 100.0 35 ..................................... TAGATGTCCATGAGTTTTTGTCTTTGGGGTCAATT 240430 37 100.0 36 ..................................... TCATAAAGACCTGACCAAAAATCAATGGCGCCTGTA 240357 37 100.0 36 ..................................... GTAAGGTGGGTCTGTCCAACAAAGCTGTACTTTGTT 240284 37 100.0 36 ..................................... CTTTGCGCGTAAGGCAATCTAGAGAAATCAGATGAG 240211 37 100.0 33 ..................................... AGATGGTAGTGTCCTTTTTAGGATTCATGAAAT 240141 37 100.0 35 ..................................... AGAAGCACCCCTGGCGACAACGACCTTATTTAAAT 240069 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 99.8 34 ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Left flank : TTGACATCGAGTTTTTGCGAATTGTAAAGGAAAATATAACAAAACCTTACTTTTATGGAATAGCTTTTGCTGTTTCCCAAAATATTTGGAAGACTACAGCAACGTTAAAAGCGTTACGTATTCCACATACGGCGCCAATTCATACAACAATTACACGCGATGGTCAACAATGGGGCTGGAGTACAATACTTTTAGATGGTTTTTTAGATAATCCAATTCCGGCGCCTTATTCTTTAGGTATACTCTCAGGTGCCGCGAACCATAGGGTGTTTTTTTGGCATAGTCCAAATTTATTGTGTAAACGCTTGTCCAGTATAGCTTTGAAGCATTCTATCTATTTTTGAGGTTCGCGGTAACTCTGAAACCCTTACCATACAACCGTTTTAGCTATTTTGAACGGCGCCTATCTTGACACATTAGCCTCTGAAACGTTATTGTTACTCTAGGTTCGCGGAACAGCACCTTGAAAACTAAATACAATGAAGCTTCTACGCCAAGCC # Right flank : ATAAGGATAAAGATAGAACAGATTGCGTGATTATGAAATACGTGTAGAGACGTTACATGTAACGTCTCTACATGATTTGGGGTATTATGTATGTACTTCTGAAAATGAAATTTGCTGCGAGACAAGGCGCCACTGTTATTTATTATGTAAGATAAAGAAGAAAATTAATATTAGTATAGTTATGATTGTTACAACAGGGAACGATGTTGCAGGACGTGCAATCAAAAACTACGTTGGTATAGTACGAGGTATTATTGTACGCTCACCAACGATTGGGCAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATATGACCGTATGATAAAACAAGCACAAAGTTTAGGTGCCGATGCTGTAATTTGTATGCGTTATGATGCCACAGAATTTGCTGAGGGAGTGACAGAAGTACTAGCTTATGGTACAGCAGTAAAACTTGAATAAGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 285457-284841 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000007.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 285456 37 100.0 36 ..................................... TCCTAACTCCTGACTTAATTGTGTTTCTTCTATAGC 285383 37 100.0 34 ..................................... CAAGTAGTGGTTCGAGGGGGAAAACCCCCAAAAA 285312 37 100.0 37 ..................................... TAAAAGTGTGTGTTTGGGGTTGTTTAGTCGCTCAAGC 285238 37 97.3 34 ...C................................. AGGGATACGAGGGTATCATTAGTTCCGAAGATGC 285167 37 100.0 37 ..................................... AGTTATTGCAACTCCGGTGACAGCCACAGGAATGTAA 285093 37 100.0 35 ..................................... CGATAGCGGCATTTTGAGTATTGATACGACACCAA 285021 37 97.3 34 .......................G............. TGGGCAATGGCGACAAACTCGTATAGATAAACAG 284950 37 94.6 36 ...................T...G............. AGTAATTATTGGCTCTCCAATATATCGGCCAAAAGC 284877 37 86.5 0 ..........T........T.......TA...T.... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 97.3 36 ATTGAAATTTCAAATAATCCCTTAAAGGGATTGAAAC # Left flank : CATAAACCAACTTCATACCCTCAACATTTCAAACAATAAACTTAGTGGGCGCCAACTCCAAAAACTATCTCAACTAAATTGTAAAGTAATTGCACAACCCCAAGACAACGGAGAACGACAACAAGCCTTAAATTAACATACTACAAACTATAATGTCATGCTGAGGAACGAAGCATCTTTAAGCAATGCTAGCGATAATATAAACCCAGAGTTAGTGTAATTGTACCTAAAATTCCAAATTTTCCAACAATACCGCGAACCGTAGGGTGTTTTTCAAGCAGATTTTTAATTGACGACCAAAACACTTACCCTGTGGTTCTTTGAAGCATTTCAGCAGTTTAAAAGGTTCGCGGTAACTCTGAAACTCCTATCATCTATACATTCCAGCTATTTTTACCTATGCTTATCTTGACACACCAATCTCCAGAACGCTATCCTTATTCCAGGTTCGCGGAACAGCACCTTGAAAACCAAATATGTCAGTAGTTCTGAATCAAACC # Right flank : AATAGAGCTTCTTACAAATTTCAAAATCTTCAAGATTCTTCGCTGTCGCTCAGAATGACATTTATTTTGGCAGGTTGGAACCTCCAAATAAAATCTCTCTTTTTTTGTTCTCTGTGTGTCTGTGTGGTAAAAAATATACATGACTGCACAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCAAATAATCCCTTAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 93404-94220 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000008.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================================================================================================================================================== ================== 93404 35 100.0 37 ................................... AAAACGTAGCCCTCTTTGGGGGAGGGACATTTTTGAT 93476 35 100.0 41 ................................... GGTCAACAACTCAGATAGTCCCATTTCACCAATCGACTTTG 93552 35 100.0 38 ................................... TGACCCTGAATATCTGCACCATTATCTGATGCGTTGTT 93625 35 100.0 37 ................................... TTTGGGGAAAGTGCTCTTGAACAATAGAGGCGCGAAT 93697 35 100.0 36 ................................... CTTGCTTAAGTGGATCAGCTGGATAACTAACAACAA 93768 35 100.0 38 ................................... ACATAGGTGTTGAAAGGTCGGTTCCCGATTTGTTCTCG 93841 35 100.0 38 ................................... AATACATGTCGTCTGCGCTCACTGAACCATCAACAGCA 93914 35 100.0 38 ................................... TTGCTTTCCAAATACTTCTCCTATTTCCACATAAATAA 93987 35 77.1 164 ......GT..A...A......T....AG.T..... AAAACTTGGAAAAACTCTATTCTTTGGCAATACTGCTCGGTTAAGAAAATTTGATAAGACCACAAACCTTGTAGAGACACTAGGAACATCGCGTCCCTATGTGCCAGGTATTAACGCAAAAAATCCTTAACCGAGAAGTATTGTATTCCTTGGGAACTAGCACG 94186 34 77.1 0 ...A...-..T...A......A....A...C...A | C [94189] ========== ====== ====== ====== =================================== ==================================================================================================================================================================== ================== 10 35 95.4 52 CTTTGAACTTCTTCGGAAGTTGAACTTATGGAAAC # Left flank : TTCGACCAGGTAAACAACGAATAAATGCTATTGATGAATTATCACAAAAAGTTAAATATTATGCTTCGGCAAATACACCCGTTAATTTAATGGGTACTATAGTTGATTCAGCTTATGTTGCCGATGCTTGGAATAAATGCTAGAAAGTTTTGTACAATATATAGAAGTCGCTTGTAAAAGGCACCTGTGTATAAAATGTCGCACATTCCCCATAATCCTTGCAAAAGCTAGTAACACTATACTTTTCTTTACTCATACATCGAGATTTCTTTTCTTATAACTTGTAGAGAATTGTAACGTAAGATACCATTTGTGGGATAAGCAAAATGCTTCAAACCCTGATTCTCTCGTTCTATCCCACAAATCACTCTCTGTATATGACTTTGAGGCGCCTTGAAGTTGAGCTTATTGCTAATAATTATCAACTATTCATGGAAAATTTTGCATCCCACAAAAAAGTACTGTAGAATTATTACAGGGCAAGACTTTCAAAGACTGGC # Right flank : AAAGCACCTAAATTAAAAATAGGTGCCCACACAGTAAATTAATACTTGTGCAATAAGTATCTTCAATTCAAATATTTTTCGTGATTTTTACTATCCAAACTTGGTTAAATATCAGCTATTAATTTCGTGTAAGTATATAAATTTTATTATTTTAATGTTGATAAAAAACCGAAATAAAGGGTAGTTTGTGAAGGCAGAAAATTTATATTTACTTTTATTCTGAGCAATTTTTCGTACAGTGTTAAGCAAAAATTTTATATTATTTGAAAGTAAAAGTAGAGAGAATTGTAAAAACATCAGAAATTAGGCGAATTGGAGTATTGCATACAGAGTACCATCGATACTTATTAAGTAAATCAAAATGTTTCTGCTCTAATGCTCTACTATCACCATAAGTATAGATAATAACAGGTATTTCGTAGTCAGTTGCTTTATTAAATATGGTTTCAAAGAAAGTAAAATCATCTCCATAACCTAAAATTATAAGAGACTTAGTACCT # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-1.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACTTCTTCGGAAGTTGAACTTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 103690-104449 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000008.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 103690 35 100.0 36 ................................... TTTTGAGCCTGATCTTGACTTATTCCAAGTTGATTT 103761 35 100.0 36 ................................... CTTTCCCAGAGAAATTCACTATTTCTGCTTCAACGG 103832 35 100.0 38 ................................... TTTTTGGTTGCAGCCTCAACTTTAAAAGTCGGAAAGGT 103905 35 100.0 35 ................................... ATTGCGCCCCAGACAAGGCCACCAAGAACGCATAA 103975 35 100.0 40 ................................... TAGTGGCTACACTCAATCAAACTAACGGGGAGGGTTGTCA 104050 35 100.0 36 ................................... GGAGAGGGAATGTAGTAGGCGTATTAATTCCTACGT 104121 35 100.0 40 ................................... AACAAAGCTTTTGAAGGAAATCCTTGGCGATTTAGCTCTT 104196 35 100.0 36 ................................... ACGATAACGTCTCTTTGTTGTCCCCCTGGTAACCCA 104267 35 94.3 37 .....................A..A.......... GTTTGAATAACCTAATTTGTTAAACATTCCTTTTGTT 104339 35 94.3 41 ........................A.........A TCAATATCCGCAGGCTTTGTAGTGTCAACAATGTCAAATTT 104415 35 71.4 0 A..............T.....T.T...C.TAGCT. | ========== ====== ====== ====== =================================== ========================================= ================== 11 35 96.4 38 CTTTTAACTTCTTAGGAAGTTGAACTAATGGAAAC # Left flank : TGCAATTGAGTGACACCCAGGTAGATTAATTATGTATCAAAAACGTACTTCACTCGCCGACAATTCTATTCCGGAAAAACACTGATAAAGCATATCACTTTTGTTAAATATATGGAAGTAGTTTATCAGCGGCGCCTTTTTTGGGATACCATGCGCTATCAACAATCGTATTGTACGATTACATTTGAGCCTGTTTAATCAAAGATTAAGTAGTGTTAATAAAGTTAGTAACGTCTGTTTTATCGTTGTACTTCTATATGTATATATATCTAGAATCTAACTTACGAAAAAATGTATTTCACTATACTATTTGTGGGATAGACACAAAGCCTGAAACCCTGATTCTCTCGTCTTATCCCACAAATCGCTATCTATCTATGGGTTTGAGGCGCCTTGCTAGTCATTTTATTGCAAAGAATTATCAACTATTTCAACTAAATTCTACATCCCACAAAAAAGTGCTGTAAACTTGTTACAAGGCAAGACTTTCAAAGGCTAGC # Right flank : CCTAACTTGCACATTACGAAAACCTATATATAGTAAGGGTTTCAAAAAATGTGCGCTTTTTCATATTTTACTGGTGCGCGAAGGGCGCCAGTCAGAGGCTGACATCTTGCACCTTCTCAATAAAGGTAAGGTGGGCAGTGCCCACCCTACCCAATAATAAGCATTACAAGCTTTTTTATTCTCAATAAATTCAAGGTGCAAGATGTGACTTAGGGCGCCATTCAAGTAAAAGATGTTGACAAATTATGTATACGCTATCATGGGTTAATTCGCCTTAGTTTGGCTTTGCCAATACTGGCTATGTTGCGTCGCACGACAAAAAATATGCGTCCAAACGTTGACAATAAGAAGATAGAACAACTTATGCAAGCCTTGGGTAGAGAAGCGAGGGGTTCAGGATGTATTTACTTTACTGGTGGCGCCAGTGCCCTACTAATTGGATGGCGCAGTTCTACGGTTGATGTTGATATTCGTTTAGACCCAGAACCTTCAGGTATTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTAGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 111062-109994 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000008.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 111061 35 100.0 36 ................................... CTGCAAAAAAGTCGCCTTTTGAAATTGCAGAAAGTA 110990 35 100.0 41 ................................... TTTCCTTCCCGCCTAAGTTCTGGCGATAAGAACTAGCGAAA 110914 35 100.0 39 ................................... ACTGGGGGAGTTTCGGCTGCTGATTTTTGTATTGTTGCA 110840 35 100.0 37 ................................... CAAAATGCGGATTTTTAAAGTCCACAATTTTTGGGTT 110768 35 100.0 38 ................................... AATAGGTATTTTCAACCTGTTGAACTTGCTGTGAAGAG 110695 35 100.0 41 ................................... ATTGTTGCGCTATCAGTAGCGCTTATGGTTCCAGAGAAAGT 110619 35 97.1 36 ...A............................... TCTTCCCGAGGCATTTATTGGTAATTTGGGTTTTTT 110548 35 100.0 36 ................................... AAACGGTCATAATTGTTTTAAGAAAATCATTCTGTA 110477 35 100.0 41 ................................... TTTTTGGCGACTTCTTCAATGGATTTTGCCATATCAAAGAA 110401 35 100.0 37 ................................... TCTAAGAAATCCTTACCCTCAGGTAATCCGACGGCAA 110329 35 100.0 39 ................................... TCTCCCAATTTGCAAGACAAAATATTTTTGTTTTGCGTT 110255 35 100.0 43 ................................... ATCTGAACTTTTTGCAGCTTTTAGATTGTCATAAACGGTTTTA 110177 35 100.0 37 ................................... TCTTGTAATGGCTTGCAAGAGCTTCCAGTAACTAATT 110105 35 100.0 39 ................................... AATTAACATTTTTTGAAAAGGCTCCAATTATTTGAAAAG 110031 35 77.1 0 ...T......A.........A....C...T..TGA | ATG [110004] ========== ====== ====== ====== =================================== =========================================== ================== 15 35 98.3 39 CTTGAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Left flank : ATGGAGGAATTCCGCGCGCAAATAGTAGATTCGTTTGTTGCCTATTTAGTAAACAAGAAAATTCTTGACCCAGAAGACTTTACTCCCCCAGATGAACGTGGAGGAGTATATCTACAAGCAACAGCGCTGAAAAAATATCTTAAACATTGGGAAGAAAAATTACAAACCGAAACAACACATCCACACACAGGTCACAAAGTAGCATATCGTCGCTGTATAGAATTACAAGTGCGCGAATATATCGCTTGTTTGACAGGTCAAGTTGAAATATATCGTCCAATGACATGGAAACTGTAGCCTAGTATACCATTTGTGGGATAGATACAACGCCTGAAACCCTTATTCTCTCGTTCTATCCCACAAATCACTGTCTGTATATACGTTTGGCGCCTGTCCTTCACAAACTTATTGCTAAGATTTATCAATTAATTAAGCAAAATTTACTATCCCACAAAAAACTGCTGTAGAATAACCACAGGGCAAGACTTTCAAAGCCTAGC # Right flank : ATCTAAATTCAGAAGTACAAAACGCCCTCCCACATGTAAAATAGAAACAATTAGATATTTGCCCCGCATCAAACGACAAATAGATAAAACATTCGCAGACCCTACACGTTTCGTTAAAACTCTTAAAAAAGTGGCGCCGCTACGCACTCTCTCCTTCCGTAAACTGCCACCATGACCTGACGGGGCGACGAAATCAGCTACAAAGTTGCTGCACTATATGGTTACTTAGGCGACTTTCCACTCTTGTGAAACATTTGTAAGTCCCTCCACCATTGGAGAAGGAAAGCTAGAAGAAATCCTAAATAGGAAAAAATAAATATAACTACAAAATTATTACTCCAAAAATTGTAAATCTTGGACACTAATTATGGTTATAATAAGTTAGTGATATTTTTCTCGCTTAAGAGTAAATTTTACAAAATTAACCCATTGTCGTTTATCTAAAAGGCATACCTACTAATAACTTAACTGCGGAGGACGAAGATTTTATGAGAACGATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 119238-118544 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPQA01000008.1 Rivularia sp. IAM M-261 Rivularia_IAM_M-261_scaffold008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 119237 35 100.0 37 ................................... ATAAAACCAACTTCAGTTCTGCTTGTTCCTATAACGT 119165 35 100.0 36 ................................... TCAGCTGGAGTTTTATCTTTCCACTCCTCGAAACTT 119094 35 100.0 35 ................................... TCTGATGTTTTTAGTGGGGAACATTCGCAAAGCTA 119024 35 100.0 36 ................................... AACAGGGTAAAAAGACTTCATAAACAAACTTACGCT 118953 35 100.0 41 ................................... ATTCTGCTTGCTCCAATATCATAATCACGAATCTGACAATG 118877 35 100.0 39 ................................... CCTCTTCTTTTCCCACTGTGGATATTTGGCTGTATTGAT 118803 35 100.0 41 ................................... ACAATGCCCGTTGGCTTGTGCTTCCCTTGAGCGAAGAAATC 118727 35 100.0 36 ................................... CAAATAGTATCACCTACAACACTTGTGCTTTGTGGG 118656 35 100.0 43 ................................... TTGCGTACCTTTACCAACGGAAGAGAAGATTCCATCAGCTTTG 118578 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 10 35 100.0 38 CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Left flank : AAATGCTTGATTTACCAGAATTTGAGGCATCTGTATGGCGCCTGCGGGTAGACAGTTGGCGAATAATATACACTATTGATGAATCAGAGAAACTTGTTAGTGTCTTGGCTATTCGTAAACGTCCACCATACGACTATGGAGATTTGCAGCAGTTGTTAGAAAGTTGAAAATGACAAGAACACTTACTGAAACTAATTGAGTTATTGGCGCCTCGTTAGTAGTAAAATTATATTACACGGATGTTGTTAACGGTCTTTAAGATATTTGTACATTTAGATTTAACTTAGAAAAATGTGACTTAGTATACCATTTGTGGGATAGACACAACGCCTGAAACCTTGATTCTCTCGTTCTATCCCACAAATCACTGTCTGTGTATACGTTTGGCGCCTGTACTTCACAAGTTTATTGCTAAGAATTATCAATTATTTGGTGAAAATTTACTATCCCACAAAAAACTGCTGTATAATAACCACAGGACAAGGTTTTCAAAGCCTACC # Right flank : AGAATAAATTGCAGATCAAAATGTGAGTTGGTTCGATTTCAATACTGCTCGCTTAAGCTCAAAAATTAAAAAAATCGTAGGTTGGGTTGAGGAACGTTCACGTAGCTGACATCTTGCACCTTGGGCTTATTGAGAATTAAATAGCTTGTAATACTTATTCCTGGGTAGGGTGGGCAGTGCCCACCTTACCCTTGTTGAGAAGGTGCAAGATGTGAGGTAGTGTGCCGAAGGCAAGACCCAACAAAAAAACTACAAAAACCAAAACCTACGTAGTATTGAGATGCTTCGTTCCTCAGCATGACAAAAGTTAGGGCAATAAGCAGGCGCCTATATTTGAAATTTAATTTGTAATCCCTTGACAAATCCAAGCACCCCAATAAAATGGGTGTTGAAGTGGTTTATAGTCGTCTGGACTATCAATTATAGTTTCTGGTGATAATTCTGAGATACTTAATAATTCTTTTAATGTTTCTATTCCAGGCGCCGATTTTCGTAGTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //