Array 1 118031-120399 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGB01000004.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118031 28 100.0 32 ............................ TGTTATTTCTGCTATTCTCGCTGATATTCTAT 118091 28 100.0 32 ............................ TGTTATTTCTGCTATTCTCGCTGATATTCTAT 118151 28 100.0 32 ............................ TATGGTAGTGAGATGCATTGGGCTGAGTTTGA 118211 28 100.0 32 ............................ GATTACTAAACCATGCCTCTGTCCCGATGGTG 118271 28 100.0 32 ............................ AGCGCTGTCAAAGCGCCAGCCAGGTTGCCAGC 118331 28 100.0 32 ............................ GCTGAATATCTCTGTAATTCCGGTCACTTTAT 118391 28 100.0 32 ............................ AATACTGACCATCAGCCGACCAGATACGGCCA 118451 28 100.0 32 ............................ CAACTAAGCGCCGCCCCGTTCAAGGCTTTCAT 118511 28 100.0 32 ............................ AATAGAACCGGGTTATGTTTATAGCTACGCTG 118571 28 100.0 32 ............................ TACGTACTCAAATAGCAGATCAATCGCACCAG 118631 28 100.0 32 ............................ TATCAACCCCATCCCACCCATTCCCAGCAAAC 118691 28 100.0 32 ............................ ACACCCGGAATTCAAGCACACCACCCCGAGTG 118751 28 100.0 32 ............................ GGCGCTGGACAGGCCTGATGATGTCCGTAAGC 118811 28 100.0 32 ............................ TGACTACACTGCTATTCTCAACTATCAGTCGC 118871 28 100.0 32 ............................ GTCAGACGCTCAAGCATTTCTTGTCTCGTCAT 118931 28 100.0 32 ............................ TGCCGACCGGCTTTATCAGCCAGTCAGTAGGA 118991 28 100.0 32 ............................ GCACCGCCGTTCAACGACATATAGTACGTATC 119051 28 100.0 32 ............................ AGGTGGCGGAATGTTACGGTCTTGCTGATGAC 119111 28 100.0 32 ............................ GTTTGTAGGTGAAGGCAGCCCGGGTGGTTTGC 119171 28 100.0 32 ............................ AACACCAGCTTATAGCCCTGCAGCTGTTCGCC 119231 28 100.0 32 ............................ GCCCGGTTCTTTACGCAGAGCAAGGCGTGTTC 119291 28 100.0 32 ............................ ATACTGCGCAGTTGCTCTTCTCGTTCGATCTG 119351 28 100.0 32 ............................ AGAAAATGACATCGGAGGGCGGAAAATTCTAC 119411 28 100.0 32 ............................ CCCGGCATCTTTGAAGGACATTATGCATGCAG 119471 28 100.0 32 ............................ TTATATCCTCCGGGCTACTCAAGCCCAGCTTA 119531 28 100.0 32 ............................ AGACTTCAGAGCTGTTTGACTACAGTGGTAAC 119591 28 100.0 32 ............................ TGACGCCGCGCAGAGTATGAACCATCGTAATT 119651 28 100.0 32 ............................ CCACACCTCAACCGATTGAGGCGCTTTAAATG 119711 28 100.0 32 ............................ AAAACCCTGCTCAATCAATCGAGCCGCAGCCT 119771 28 100.0 32 ............................ TCACACTGGCCACTTACCCGGATTGCCTCTGC 119831 28 100.0 32 ............................ TGAAAAAAGGTGGCTATAAAACGTTTTTGACG 119891 28 100.0 32 ............................ TGGATTAAGACGGCCCCCAATATCAAATATAG 119951 28 100.0 32 ............................ AGTTTCGCGTGTGAAAGCCAAATGTCCGCCCA 120011 28 100.0 32 ............................ AATGCAAGCCCGCCCGGGTGGGCGGGTGATGA 120071 28 100.0 32 ............................ AAGCAAACCGTTTACCAGCCGCATTGAGAGCA 120131 28 100.0 32 ............................ TCTGCGACAATCTCAGAGCAACGGGCCGCGAT 120191 28 100.0 32 ............................ GTTCAATTTCTTCAAGCCATTTTTCCATCCAC 120251 28 100.0 32 ............................ CCGTTTTCGTTAGTGAAAAACACCTGGTACGT 120311 28 100.0 33 ............................ AAGCCACAATTCACGTTGGTGCATTGCAGATAG 120372 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 GTTCACTGCCGAGCAGGCAGCTTAGAAA # Left flank : AAGGCTGCTTGAGCAGGCACGTGATGATTCTGTGCTGTCGAACTACGCCCTGATCACCGATGTCTTAATGGTTCCCGAAAAGGTGAAGGGCTATGCCTTGTATCGACGCAGGCACGTAAAGGGAGAAAGCGATATCAGGCGATTGGTAAAAAGGCATAAAGCACGGGGAACATGGAACGCGGAATTAGAGGAAGCGATATTTGCGAAATATCGACAACCTAAGAACTGTCCCCACGTTACGCTGAAAAGCTATACCACGGGGCAGCCAAAGTTCATGTTGTTTATAGAACAGGCGATGCAGGGTAAAGCGGTTGAAGGGGAGTTCAATGCTTACGGCCTGTCTAAAGGCGGCACCGTACCCTGGTTTTAACCCTTTAATTTTAGCTCTTTAAAAACTTGTTAAAAAACAGATAGTTGCAGAAAGCACTAAAATCATTGGTATTTTTACTAATATCGGGTTAAGTGTTTGATGCAGCTATTTTTTTCTGCGTTATACTTCA # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 121874-122202 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGB01000004.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121874 28 100.0 32 ............................ TATCGCCGCGAGCACTGCTTCGGCAATCAAAC 121934 28 100.0 32 ............................ GCAGGAACGGAGAGTTCTATCCATGAGAATTC 121994 28 100.0 32 ............................ AGAACCATAACCTACAACGGCATGCTTCATTC 122054 28 100.0 32 ............................ AAGGCCACAACTCACGTATTCTGTCGATGGTG 122114 28 100.0 32 ............................ ATTTCATGCCGGGGCGGTTTTATCGCCTGCGA 122174 28 100.0 0 ............................ | G [122200] ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGAGCAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAT # Right flank : ATGCTTATCGCCACTGCAAGCGGCTCCTACACTATGTGCTTTTCTCTGTGCTCTCTGTGTCCTCGGTGGTAAATACGCTTTTGAGTGGTGGTGTTTTTGTGCGAGGTGCGCCTCGCGCCGATTGCAGCTAAAAGTAATCGCGACGGGGTACCCAGAGGGCATGCTAACGTCGCTCCCACAGGTAACGACTGAGCATCGCGACGAGGTAACCAGAGGGTTGAGTTTGATCAGTGTTTTCTGCCGAACACGACTCCAGGGATGGAGGAGGTAGAACGAAGCAGGCAGCTCGAGTCGAGGCCGCTTAGAGAATGCTTATCGCCACTGAAAGCGGCTCCTACACATGTGCTTTTCTCTGTGCTCTCTGTGGCCTCGGTGGTAAATATGCTTTTGAGTGGTGATGTTTTTGTGGGAGGTGCGCCTCGCGCCGATTGCAGCTCAAAGTAATCACTCCCACAGGTACGACTGAGCATCGCGACGAGCTACCCAGAGGGCTGAGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //