Array 1 107775-106298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAQ010000003.1 Salmonella enterica strain 216 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107774 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107713 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107651 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107590 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107529 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107468 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107407 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107346 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107285 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107224 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107163 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107102 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107041 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106979 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106876 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106815 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106754 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106693 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106632 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106571 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106510 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106449 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106388 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106327 29 96.6 0 A............................ | A [106300] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125522-123907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAQ010000003.1 Salmonella enterica strain 216 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125521 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125460 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125399 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125338 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125277 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125216 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125155 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125094 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125033 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124972 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124911 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124850 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124789 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124728 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124667 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124606 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124545 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124484 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124422 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124361 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124300 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124239 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124178 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124117 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124056 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123995 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123934 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //