Array 1 53036-55760 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEE01000006.1 Ligilactobacillus salivarius strain JCM 1230 JCM1230_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 53036 36 100.0 30 .................................... AAGAAAAATAATTTTTTCTGTTTCGGCAGC 53102 36 100.0 30 .................................... GATACTGCTAAAAGAATATGTATATGCTGA 53168 36 100.0 30 .................................... TGCAGACAATAAAATTTCTCCTAGTGTATT 53234 36 100.0 30 .................................... TTGAAACGGTTGAAAAGGACGTCCAAGATA 53300 36 100.0 30 .................................... TGGAGTTCGTAATTAATGTAACTCCACCCA 53366 36 100.0 30 .................................... GATTATTAATATTGTTGTGGGTTTACCGTC 53432 36 100.0 30 .................................... AAGGCGGAACGAACGGCAAAACGATTATAT 53498 36 100.0 30 .................................... ATAGATGTCCCATTCCAAAGCTTAAACCGC 53564 36 100.0 30 .................................... ACGTTTGAATGATGATAGCTTGAATCTAGA 53630 36 100.0 30 .................................... TGAGAACTTGTTTTCTTGTTAAAAGTTAAT 53696 36 100.0 30 .................................... TATGAAGATTAAATATTGGCAAGTAGGTGT 53762 36 100.0 30 .................................... CTTTACAACAGCTATTTTTGACGAAATTGG 53828 36 100.0 30 .................................... ATTCGTTTGAGAATGCATCTCAAGTGTGTA 53894 36 100.0 30 .................................... TGATAGCGATAATTCTAAAACTGATACGAG 53960 36 100.0 30 .................................... GGATCCTTTGACTGGCTGGAATAAGAAAGA 54026 36 100.0 30 .................................... CAACGGACAATATGGTTACTTGCCTACTGG 54092 36 100.0 30 .................................... TAATTGCTTTGTTGCTTGTCATTACTTCAT 54158 36 100.0 30 .................................... GATTGACATTGAAAATATCGATTTTATTAA 54224 36 100.0 30 .................................... TGATATAAATAAGATCTTTCTTGATACTTC 54290 36 100.0 30 .................................... TAATGCCTAGTAAGCATTGCCGCAAGGTAA 54356 36 100.0 30 .................................... AGCTCGTGGCTATACTCGTAAAGCTATTCT 54422 36 100.0 30 .................................... TGATGGAGACTGTTTGTTCCACTTAGATAT 54488 36 100.0 30 .................................... TGAAATTGAAGTAAAGGAATTGAAAAATGA 54554 36 100.0 30 .................................... CTTGGCTAAACGATTTGTTACAACACGTTC 54620 36 100.0 30 .................................... TGTCGAATTGTTTAAGCGTTTCTTAGAAGT 54686 36 100.0 30 .................................... TGTAGTTGATGATAGGTGCGTTAAGTTGAT 54752 36 100.0 30 .................................... CACCGCAATGATTGGGGAAGCCTTTGAAGA 54818 36 100.0 30 .................................... TGGGCAAATTGGCTACTTGACCGAACCTGG 54884 36 100.0 30 .................................... CAAATTGCTTGAATTACGGTCATCACGCTT 54950 36 100.0 30 .................................... TAAGAATTTTAAAATCGAAACAGCATTACG 55016 36 100.0 30 .................................... TAAAAAGACAGCTAAGAAAAAGGGACTTGA 55082 36 100.0 30 .................................... ATAAAGAAAGTGACCTAATATGAGATATGT 55148 36 100.0 30 .................................... GCAAAAAACAAAAACATATTCATTGATTGA 55214 36 100.0 30 .................................... CAAAACTGGAGAAGTTCGCACGAATGCTCA 55280 36 100.0 30 .................................... GGATAAGGGTATTTGATGATGATGGTACTA 55346 36 100.0 30 .................................... CTTCAAAACTAGGATTAGACTCATCGTCTA 55412 36 100.0 30 .................................... TATACCTAGTGAATTATTATATATACCTTT 55478 36 88.9 29 ........................A.......AAT. ATATCGTCAAGATACAGATAAACATTGGT 55543 36 86.1 30 .........A..............A........AAT GGTTCTGAGCCTAGTTAGAATGACATAGGT 55609 36 83.3 80 ..........A..A......T......A....TA.. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTGTTTTAGAGTGGTTAGTTTAGGTATTA 55725 36 80.6 0 ..........A.........T...AG...CG...T. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 41 36 98.5 31 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGGCC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCATGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAGATAGAAAAAGAATTATAGGTCTAACCAATGTCGCGCATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGATTGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //