Array 1 163199-162028 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUT01000030.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-47 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163198 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163137 29 96.6 33 .......T..................... CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163075 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163014 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162953 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162892 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162831 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162770 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162709 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162648 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162587 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162526 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162465 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162362 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162301 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162240 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162179 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162118 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162057 29 96.6 0 A............................ | A [162030] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180946-179331 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUT01000030.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-47 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180945 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180884 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180823 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180762 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180701 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180640 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180579 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180518 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180457 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180396 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180335 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180274 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180213 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180152 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180091 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180030 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179969 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 179908 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179846 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179785 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179724 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179663 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179602 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179541 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179480 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179419 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179358 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //