Array 1 49-858 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKG01000011.1 Moraxella catarrhalis strain 16/38/1 NODE_11_length_54299_cov_22.003434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 109 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 169 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 229 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 289 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 349 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 409 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 469 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 529 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 589 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 650 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 710 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 771 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 831 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CAGGTCGCTTAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24556-25244 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKG01000017.1 Moraxella catarrhalis strain 16/38/1 NODE_17_length_25283_cov_23.477500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24556 28 100.0 32 ............................ ACTGATCCTCCCAGCGAAACTCAAAGCGAGCC 24616 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 24676 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 24736 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 24796 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 24856 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 24916 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 24976 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 25037 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 25097 28 96.4 32 ...................T........ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 25157 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 25217 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTACACTTGTAATCGTCGAAATGCTTCTTGTGTCTTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //