Array 1 86511-88127 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJGS01000003.1 Escherichia coli strain 1356 NODE_3_length_217674_cov_146.225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86511 29 100.0 32 ............................. CGGCGCTCCTTGGTGCTACAGGCACTCTCCCC 86572 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86633 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86694 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86755 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86816 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 86877 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 86938 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 86999 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 87060 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 87121 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 87182 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 87243 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 87304 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 87366 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 87427 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 87488 29 100.0 32 ............................. TGGCAGTGGCTTTGTTTTTTGCTCTGATATAT 87549 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 87610 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 87671 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 87733 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 87794 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 87855 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 87916 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 87977 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 88038 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 88099 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113676-114619 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJGS01000003.1 Escherichia coli strain 1356 NODE_3_length_217674_cov_146.225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113676 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 113737 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 113798 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 113859 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 113920 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113981 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 114042 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 114103 29 96.6 32 ...........................T. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 114164 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 114225 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 114286 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCCGGTTTTTATGCA 114347 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 114408 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 114469 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 114530 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 114591 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //