Array 1 164723-164956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFF010000002.1 Campylobacter coli strain 2019/0191 NODE_2_length_213209_cov_129.923282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164723 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 164789 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 164855 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 164921 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TTCAAAACCAGTGGGGCTAAATCAATTTAGGAAAAACACAAACAGAACAACTATATAAGAAGCGATAAGGAGACACTTATGAGGATCGAGCATTCACAAAATTTTTTACATAGCAAACGCCTTGTGTCGGAGTTGCTATCAAAAAGCAATATAACAAGCGAAGATACTGTAATTGAAATAGGCCCCGGTAAAGGAATAATTACGGAAGAATTATCAAAGAAATGTGGACAAGTTATAGGAATTGAATATGACAAAGAATTAGCACATTTGTTGCAAGAATCTTTCGCGAACAAATCAAACGTCAAGATTATCGAACAGGATTTTCTTAAATACAAATTGCCTAACAATGGAGTTTACAAGATTTGTGCGAATATTCCTTTCAATTTGACTGCGGACATCATGAAGAAGGTGTTGGAATTTGAAAATCCTCCAACTGATATTTACTTTATTATGCAATATGAAGCATTTTTGAAATACGCTGGAGAGCCGTATTATAACGA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 166196-166561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFF010000002.1 Campylobacter coli strain 2019/0191 NODE_2_length_213209_cov_129.923282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 166196 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 166262 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 166328 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 166394 36 100.0 30 .................................... AAAGCATCTCTTAAATCACTATCTTGCAAA 166460 36 100.0 30 .................................... TTATAGTCGTGAAACAAGGGTTGCAATAGG 166526 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACGCATTTGCAAACAAATCAAAATCTCAATGGACTCGTCTGTAACCGCTATTGCATATGAGGGATGGCTAAATTTATATGATGTGTTCTTGAAATTCGTTTCGAGCGACAAGAAAGAAATTATTAGAGGGTCGGAGAAACATTTAAAAAACAGTCAGAAGAACCTGCACAAAATACATCGAAATCGCAATAACGGTTATTCAAAGACAAAAAGTTATAAAAAAAATAGTGAAAAAAAATAATGAAAAACGGATATTATTTATTTGCCTATGTTGAGATAAACAAATATGCTAATTACTACCAAATTGATACTAAAAGGCACGATCAAAATATTTCATTATGGGAATATTTTGATGGAAATTTGACATTATTAAGATATTGGGAACTTGAAAGGCTATCAAGAATTAAACATCATAACAAAGCATTTTCGACAAAAGAACAATTCATAAAATTTGTTAATCAGCTTTTATCTCAATTTGATTTAGATGATTCTAAATTGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //