Array 1 165955-165150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIK01000008.1 Acinetobacter baumannii strain ARLG1936 ARLG1936_NODE_7.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165954 28 82.1 32 A.CTA.......T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT 165894 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 165834 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 165774 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 165714 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 165654 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 165594 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 165536 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 165476 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 165416 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 165356 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 165296 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 165237 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [165232] 165176 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 92.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTATGT # Right flank : TTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCAG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 171510-171717 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIK01000008.1 Acinetobacter baumannii strain ARLG1936 ARLG1936_NODE_7.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171510 28 100.0 32 ............................ ATCGGACGACCTGTCAAAACATTTTGCTTATA 171570 28 100.0 32 ............................ CGTAAAGGCGTAGATGAAAACACAGCTTTGAA 171630 28 100.0 32 ............................ AAGCCCCAGTAAACAAAGACTTTGAATTAATA 171690 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : GCTGAGAAATATGGAGAATATAAATAATTTAAAAAAGTAAACGAGCAGATGATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48062-45612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGIK01000033.1 Acinetobacter baumannii strain ARLG1936 ARLG1936_NODE_20.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 48061 29 89.7 31 ...A........CC............... ATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 48001 29 86.2 31 ....G.......CC..............A TGAGAGAGCGAATTTTTGCATTAGTCGATGT 47941 29 86.2 31 ....G.......CC..............A ATATGCGACAGATCTAAAAACGCTTGAGGAA 47881 29 82.8 31 ...AC.......CC..............A GCAAAGTTTCAGGACAAAGTTATAGCGCAAT 47821 29 86.2 31 ...AC.......CC............... AGCTGTAACTAGGGGCACACATTCATAGGAG 47761 29 82.8 31 ...AC.......CC..............A CGATCATCATTCAGAGAATTTCTTAAACCTG 47701 29 82.8 31 ...AC.......CC..............A AAGCAGAAACAGCAGAACCCAGAATCTTTGT 47641 29 86.2 31 ...AC.......CC............... TTAGTTAGCCCAACAAGAAATTGATCAAGAA 47581 29 100.0 31 ............................. TTCTTTAATAGGTCTCTTTCATTGCCAATGA 47521 29 100.0 31 ............................. TGTATTGTTGCTGACTTAAACCAATTCTTAC 47461 29 96.6 32 ............................C TTGAGAAATTCCATTCTCTTTGGGTACAGGTA 47400 29 96.6 31 ............................A CAATATAGATATGCTCAGCGTTTTGAACCGA 47340 29 100.0 31 ............................. TTGTAACCACCAGTTAAAGTATTGACTAAAT 47280 29 100.0 32 ............................. TTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 47219 29 96.6 31 ............................A TTGAGAATCCAGTAGGCCGAATAGAAAAGCT 47159 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 47099 29 89.7 31 ...AC.......................A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 47039 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 46979 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 46919 29 93.1 31 ....C.......G................ TAAATGCTCAACTATTTCTGTAGCTAATGGA 46859 29 86.2 31 ...GC....T...C............... TCAAATGATTTAATGAGCTTGTAGCCATTTT 46799 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 46739 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 46679 29 79.3 31 ..CGC.......CC..............A AGCCATTTACTTTGATAAAGCGACACATAGC 46619 29 96.6 31 ............................A GCTTCAACACGTGTGCTATTAGGCGGCAAAG 46559 29 96.6 31 ............................A TGAGCAAATTATCAATTGATCTATCTGCAAG 46499 29 93.1 31 ............CC............... AGACGGTGTTACCTGTAGGCGGTGTCTACTG 46439 29 86.2 31 ...TC.......C...............A TCGTTTGAATAATATGGACAATCCAGCCAAT 46379 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 46319 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 46259 29 93.1 31 ....G.......C................ TCATCACGTAGCCTTTTACACGCATCTTGCG 46199 29 96.6 50 ....................C........ GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 46120 29 89.7 31 ....G.......CC............... ATATATACTATTTTCTCCGTCATTTTCTTTT 46060 29 82.8 31 ...TC.......CC..........A.... GATAGTTCGGAGCATGTAAATCTCCAAAATG 46000 29 82.8 30 A..TA........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [45975] 45940 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 45880 29 86.2 31 ...GC.......C...............A TTATCCAGATAAAACCATATCTACAAAGTGG 45820 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 45760 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 45700 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 45640 29 79.3 0 ....G....T...C.A........AT... | ========== ====== ====== ====== ============================= ================================================== ================== 41 29 88.7 32 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ATGATTTATTTTTTATTGATACTTCTACAAATTACATATATAT # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [51-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //