Array 1 49933-51000 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYGB01000009.1 Listeria monocytogenes strain CFSAN049287 CFSAN049287_contig_0000009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
     49933	    29	 100.0	    37	.............................	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC	
     49999	    29	 100.0	    36	.............................	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 	
     50064	    29	 100.0	    35	.............................	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG  	
     50128	    29	 100.0	    37	.............................	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG	
     50194	    29	 100.0	    36	.............................	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 	ACT [50206]
     50262	    29	 100.0	    35	.............................	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT  	
     50326	    29	 100.0	    36	.............................	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 	
     50391	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
     50456	    29	 100.0	    36	.............................	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 	
     50521	    29	 100.0	    34	.............................	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG   	
     50584	    29	 100.0	    34	.............................	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC   	
     50647	    29	 100.0	    37	.............................	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC	
     50713	    29	 100.0	    34	.............................	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA   	
     50776	    29	 100.0	    37	.............................	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG	
     50842	    29	 100.0	    36	.............................	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 	
     50907	    29	 100.0	    35	.............................	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT  	
     50971	    29	  93.1	     0	.......................A....C	|                                    	C [50994]
==========	======	======	======	=============================	=====================================	==================
        17	    29	  99.6	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.41   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//