Array 1 147850-148610 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147850 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 147911 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 147972 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 148033 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 148094 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 148155 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 148216 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 148277 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 148338 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 148399 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 148460 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 148521 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 148582 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : NYYKGCATCAGCGCCGATCCGTTCATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 864-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 863 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 802 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 741 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 680 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 619 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 558 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 497 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 436 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 374 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 313 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 252 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 191 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 130 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGC # Right flank : GCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 414-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000143.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 413 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 352 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 291 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 230 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 169 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 108 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGGGCTTTGGTGAAGATTTCTGATTTGGTCATT # Right flank : GAACAGGAACAGGAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 78 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 139 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 200 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 261 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 323 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 426 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 487 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 609 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 670 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 731 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 792 29 96.6 0 A............................ | A [818] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 272-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 210 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 88 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : C # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17286-16404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17285 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17224 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17163 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17102 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17041 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16980 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16919 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16858 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16797 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16736 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16675 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16614 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16553 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16492 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16431 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTATACCGGATTCCATGCGTTTTCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 776-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNSK01000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Q1 Contig_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 775 29 100.0 32 ............................. AATTATTGCTGTGGCTGGGGTTTCGATTCGAT 714 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 653 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 592 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 531 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 470 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 409 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 348 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 286 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 225 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 164 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 103 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 42 29 93.1 0 .................A........T.. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GA # Right flank : GAAACGAAAGAGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //