Array 1 1389-106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSW010000011.1 Microcystis flos-aquae FACHB-1344 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================================= ================== 1388 35 100.0 40 ................................... TAAAATCAATCGGGCACAGTCAAGAGAACGTCCAAATTTC 1313 35 100.0 40 ................................... AATTAACCGTGCATTTTGCACGGCAATCAGTCCTTGAAGG 1238 35 100.0 38 ................................... ATGGTGATTTCTTGGGTAATATTCGATCAGGATGATTT 1165 35 100.0 33 ................................... ACCTCCTGCTGCAGCTGGATGATGCGTTGAAGT 1097 35 100.0 42 ................................... TTTTCTTCCAACAACTCCTCTAACGCTTCCTCTAACGCTTTT 1020 35 100.0 32 ................................... GAGAACATATTAAGCCCTAGGTCCTCCCACTC 953 35 100.0 35 ................................... AACTGTAATTCCCTGCGCTCCGTCTCCAAATTCTC 883 35 100.0 40 ................................... AGAATGCACTCCGTGCGAAACATGGGCTGCTCCGGCGAGA 808 35 100.0 39 ................................... GTTTGGATTGACTCTCCGACAAAGCTTGTCGCGGTGATT 734 35 100.0 35 ................................... ATCGATGGCGGTTTCCCGACGCGCAATTTCTTTTT 664 35 100.0 44 ................................... GTCAAAGTGGCAAAAAACAAGCGTTGCCGCTTGGTCAGAAACTC 585 35 100.0 39 ................................... AACAAATTGAGCCATTTTTTTAGTCTCCTTTTTGACTGA 511 35 100.0 41 ................................... CATCCAACGGAGTAGGGGCAATTCATGAATTGCCCCTACTG 435 34 82.9 183 ...........................G-..TTTG CGGCAAAAAGTACGGGCGAAGCATTCGGGCAATAACCTATCGGTGAAACCGTAGATTTTTTATCCGAATGCTTCGCCCCTACAGGACGCGGGCCGATGAAGACGCTAGGTTTTGAAGCACGATTCTCTCAAAATCTTGCACCTGTGGGAGCAAGAAAAGCCACAAAACCCTTACCATGCCTAC 218 35 80.0 40 A...C..T..A.....C..CC.............. GTTTTTGCTAACCAATTGTTAGCTTTAGGAACCCTCCAGA C,C,C [195,204,212] 140 35 88.6 0 ...........................C....CTT | ========== ====== ====== ====== =================================== ======================================================================================================================================================================================= ================== 16 35 97.0 48 CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Left flank : GTTCTACTATATATAAAGTGGACATAAATTAATATAAGATATACTTTAAGGGTTGAAGTTGACAAAAAGATATTCAAAAACTAGCTTTGCACACTAGATAAGCTAAAGCTGGAATCGCATAGGGAGCATCTCATTTATGCAAGTGAGTAATTATACTTGTCCTAAAACTGTTTTCTAGTAAGGCTTTCAAAATAGCTTGACATAAAGATTTAGGGGTTATAAAGGTGAGATGCTCCCGATCGCATAGGCATTAGCGTGGAACAAATTCTATTGTTTCATGCCGATGGAATGGGGGGTTTCTCAACATTTTTCGTGGGTTAGACACAATGCCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGGCCAGCAAGACTTTGAGCCTTATGACTGAGGTAACTATTGAGAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATTGCTGTACAATCCTTATACAGCCTAGTTTTGCCAAGCTAGT # Right flank : TCCCCCGTATAAATATACTAGCTATGGCTAAAAGTCTTACACAGCCTGAGTTAAAGCAATATAATACTAATGGACTACTGGACACAAACTCCGGAAGTCCTTACGC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 10368-12090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSW010000115.1 Microcystis flos-aquae FACHB-1344 contig115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================================== ================== 10368 35 100.0 35 ................................... GAAGAGGTATCGTTACAAGATAGAGTTGTGAATCC 10438 35 100.0 37 ................................... ACCCCATCAATTGTATGAGGCTCAGCGCCGAGCCATT 10510 35 100.0 42 ................................... TTTGCAAAGGTAGATGCATTCTTTCCGCAAGGCCTCCAGAGA 10587 35 100.0 36 ................................... CCAAGAGCTTCATCGCTCAGCAAATCGACCATGACA 10658 35 100.0 42 ................................... TCTGCAGTGAATAACAAGGCTGCAGAACAAGAACGAATCATA 10735 35 100.0 34 ................................... AATCGGAGGCGGAGCGACCATTGGTCATCATCCC 10804 35 100.0 35 ................................... GAACTCCCTCAGGACTTGTTGCTCTGAGGGATCCA 10874 35 100.0 41 ................................... TACTAAGAGGCCATACAATATGCCAACGATCCAGAGGAGGC 10950 35 100.0 40 ................................... ATTGTCGCAGCAGTATTTAAAGTTGGTGCATCCAACTCTT 11025 35 100.0 35 ................................... ATTTAAAGTTGGTGCATCCAACTCTTTTTGTGCAA 11095 35 100.0 35 ................................... GCCAAGATTTGCTCCTGGGGAAGTTTTACAGTGGT 11165 35 100.0 36 ................................... GGCTACATTCCGCTGGGCAGTGTAGCCTCGGGGAAT 11236 35 100.0 34 ................................... AAAGAATTTTCGTTCATTGAATTTTTTACTGAGA 11305 35 100.0 43 ................................... CCTTTCTCCCCGTTTTTTTCTAGATCGTCGAGTACTGAACCTA 11383 35 100.0 37 ................................... ACATAAGGCCAAGAATGCATCAATCTGTGATGCGTTT 11455 35 100.0 37 ................................... GAACGTTGTACTGTTGCTCTCGCACTTCTTGACGATG 11527 35 100.0 40 ................................... CCGCCCAGTTGTGCCAACGCAGCCCGTTAGGGCGACGGTA 11602 35 100.0 54 ................................... GTTTGCACGGATTGAAAGGCAAAATTTACCGATGCGGTAAATTGGTTTGCTGTT 11691 35 100.0 35 ................................... CTTGGAAACTATTTCCGGTTTCGGATGTTGCCTTA 11761 35 100.0 40 ................................... AATTTCGTAACCAGCGATGTCTAAGACTGTAAACATAGTA 11836 35 100.0 41 ................................... CATCCAACGGAGTAGGGGCAATTCATGAATTGCCCCTACTG 11912 35 100.0 37 ................................... AAAAGGCCCCCCCACCAAAATCCAGAGATTCCATCGA 11984 35 100.0 37 ................................... AAAAGGCCCCCCCACCAAAATCCAGAGATTCCATCGA 12056 35 85.7 0 ..........................TT.AA...A | ========== ====== ====== ====== =================================== ====================================================== ================== 24 35 99.4 38 CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Left flank : GAAAAATCGGAGTGCTGATGCGAACACCGAAAGGATGATGAGAGATCAACCCTGAGCAACAAATAGAGAGCTACCAGAGTCTGCTGCTATTAAGGTAAAGCAACTAAAATATCGGGAGCATCTCATTTATGCAAGTGAGTAATTATACTTGTCCTAACACTGTTTTCTAGCAAGGCTTTCAAAATAGCTTGACGTAAAGATTTAAGGGTTATAAAGGTGAGATGGTACTAGGGCAATGATCGCATAGGCATTAGCGTGGAACAAATTCTATTGTTTTATGCCGATGGAATGGGGGGTTTCTCAACATTTTTCGCGGGTTAGACACAATGCCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCTTTGCCCAGCAAGGCTTTGAGCCTTATGACTGAGGTAACTATTGAGAATCATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATTGCTGTACAATCCTTATACAGCCTAGTTTTGCCAAGCTAGT # Right flank : ATCTCTGAGTTGGTTGGTATCGGGCTAGTTCACTGAATTTGCATAGGATTTAATGAGTTTAATTGTTGAATAAATGTAGCGCGATCACGCTGGTTAACTCCAAAAATTGTTACTGTTTGATAAGGTTCCTGTTGTGGGGGAAAATTAGATTTAATTAACACATAAGAAGGTGTAGAAGCAGTTTCTCCTCGTTGGCTGATTCGTCCGCCAACATTAGCATTTCCATTTCCTTTTTGATTGACACCTTTAAAGCCACTACTATAAAGGAAATCCAGCCCTTCTCCCCGTACTTCTGACCTTAATCCTTCGTTTTGCCAATTCTTGACAGTTCTAGGATATTTTAAACTAGGACAAGAAATTAAATAAATTTGAGCCTGACTATTCAAAACGTCTTGAGAGCGATTGCCAGGATTTCCGGGAGGACAATTAGCAGGATTTCCTATGGCAGACTGTAGGGCAAGCAAAGAATCTCTTACCTCTCTAAGAAACTGCTGCCATCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 24327-21247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSW010000071.1 Microcystis flos-aquae FACHB-1344 contig71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 24326 37 70.3 34 T..TATGGAGT............T............G GCTTTTTCACAAGAGGGCAAACACTAGGCAATAG C [24312] 24254 37 94.6 35 .......................T............G TCTGTTATTAATTGGGAATTCGAGGATGGTAAAGG 24182 37 94.6 36 .......................T............G TTTTTTGAAATTACTAGGCATTTACAATTATTATCT 24109 37 94.6 34 .......................T............G GGCGATATGCTTTGGCTTATGCCAAAATTGCCGA 24038 37 97.3 37 .......................T............. TGATTAAAAAGCAGATGGACATTTTTAACAGATTCTC 23964 37 100.0 38 ..................................... TTGAGACTGAGAAAAGTCTTTGTTTTTACCGTTGTCAA 23889 37 100.0 39 ..................................... GATAAATGCTCAATTTCTGCAAGTGTAAATATGAGATGT 23813 37 100.0 34 ..................................... TACTAAAGCCATAAATGGTTTTCCTCAATTGATA 23742 37 100.0 35 ..................................... TTTTCTTATCCCACTGCAAGCGATCAAAAATCGAG 23670 37 100.0 34 ..................................... TAAATTTTCAGCGATTTGCTTTGTTGTTTTCCAG 23599 37 97.3 37 ............T........................ GTCACCGTTGTCGCCCTTGCTGGGACTGGGTTCCGGG 23525 37 100.0 36 ..................................... AAACCATTTCCCCCCAAGAATCTTAAAAAATTGAGA 23452 37 100.0 51 ..................................... TTTAGGCAAAATTCTAAATTCTAAATTCTCTTAAGGAAGATTTAAGCTTTT 23364 37 100.0 33 ..................................... ACAATACTAAGAGTATTGATAGGACAGGATTTA 23294 37 100.0 34 ..................................... TGAACTGGATCACTTCACTGCCAAAACTTATCAC 23223 37 100.0 34 ..................................... TCATCTCAGGGGAAAACAGCGATGATGATCAAGA 23152 37 100.0 33 ..................................... TTGATTACTTGAGCTTGGGCGCTGCCAGCGATT 23082 37 100.0 34 ..................................... CCGCCACCTTGATCTGTAAGTCGCCGATCGCAAT 23011 37 100.0 35 ..................................... TTCTTTTCTTGTGCACTGCCCTGAGAGATAGAGGA 22939 37 100.0 34 ..................................... AACAATGAGTAAACCACCGATCAGCTTCCGTCTT 22868 37 100.0 34 ..................................... TGATGCGGAATGGCAATGTATCGCATCGAGCGAC 22797 37 100.0 38 ..................................... AAAGTATAAAGTTGACTTGTCATTACTTCCTTTTTAAG 22722 37 100.0 35 ..................................... AAGGTATCTGAATCAGTCTGGCCGCCCCCGCCGGT 22650 37 100.0 34 ..................................... CTCCGCAACAAGACACTATGAAATGCTGGTTGTT 22579 37 100.0 35 ..................................... AGAAGAATAGGGATTAGCCAACACCTCAAAAACAC 22507 37 100.0 35 ..................................... GCCACCTGTCTCACCATGCCATTAACCCTAGTCGT 22435 37 100.0 36 ..................................... ATTAATGGCTTCACTGTTTATACTTTCTCTAATGGA 22362 37 100.0 37 ..................................... CCCGCAGTCCTCTCGGTAAAAGTCCGCCCTACCAAAG 22288 37 100.0 35 ..................................... TTTCCCTCAGAATTTACCAAATGCCCTTTTTTATT 22216 37 100.0 35 ..................................... GATATTTTATGCCCCCTAATGGGGGCTTTAGGAGG 22144 37 100.0 35 ..................................... AAATCGAGAAAAAAACTATCGAGAAGGCTCATAAA 22072 37 100.0 34 ..................................... CCTTGTGCGATTACTTTAAGTAAATCACCTAATT 22001 37 100.0 34 ..................................... ATCAAAATCATCGGCTCAAAATTAAAAGCTCCGT 21930 37 97.3 34 ....................................T ACAACGTGATCGGGGAGGCGATCGATCATTATAC 21859 37 100.0 35 ..................................... CCTGGAGAACACAAATCCCCCCGCGACAAAACACC 21787 37 100.0 37 ..................................... GCGTTAAGACGACTGAGGAACGGGTCCGGGAGGCGGA 21713 37 100.0 35 ..................................... GGCTTCGATTTTTGGCTTGATTAAGCGGCTTTTGT 21641 37 100.0 34 ..................................... CTAAGGCTCCTGATTCACGGAGATCGGACATCAT 21570 37 100.0 34 ..................................... ATCAAAATCATCGGCTCAAAATTAAAAGCTCCGT 21499 37 97.3 35 .......................A............. AATGTCATGACCGAGGCTCGCTTAAGAGAATTTTT 21427 37 97.3 36 .......................A............. AACGTGCTATAATAAAAGAGCGAAAACCAATAGGAG 21354 37 97.3 34 .......................A............. GGTAAATATGCTTATTGTTCCTCACTCTATTGTT 21283 37 89.2 0 A...........G....T.....T............. | ========== ====== ====== ====== ===================================== =================================================== ================== 43 37 98.3 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : AATGGCAGAGTTGGAAAAACAGATTAATCGACTTCCCCATTTGCCAAAGTGGTTTGTGGAAATCCCTTATCAAACCACTTGACTATTGGATCATCT # Right flank : ACCCTAAAGATTCAACGGCATTAGAAGCGATTATCGCGCCAATTCAGACTTGAATTGGCGTTTTTGTTCAGAATTTAAGTGATTAGGGGCTGACCTAGATAGGGCTGGCTGAATAATGGTAAAACCCTTTTAAAATAAGGCTTTTGACCTGTTAAAATCCCATGTTCATGCTGCGAATATAGGATTGGGACATTCAAAAACCTGGCATTATTCTTTTTATAGTACGCAAACTGGTACAAAAAAGCAGGGCAACAAAGCCTGAAACGACCGACGACCGGCTACTGACGACCGGCTACTGACTCCTAACCCCACCAACAAACTTTTTGCCGCAAACCCTATCTAAAAATCAAACTCGTCTAACCCCGGTTGTGGGGGAGGAAAACGACTGCGAGGAGATTTTTTCGACTTTCTCAAAAAAGCGGGGATAAATGCGGCCATAAAAAATCCAATTCCCAAAGAAAAAGCCAATAAAACACCGATAGGTACTTTAATTGACTCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 25610-25340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSW010000151.1 Microcystis flos-aquae FACHB-1344 contig151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 25609 36 97.2 42 C................................... TCTCGGTGGACAAGCTTCGATTAAGAAGTATCAGTTAACTCA 25531 36 100.0 38 .................................... GAATTTGACTGGTCTGAGCGCACCGCTCAAAACTTTAT 25457 36 100.0 42 .................................... AATAAGAGTAAGGCTAATTAATGAATTAGCCTTACTTTTTTA 25379 36 83.3 0 .................A....AT....T.C.T... | TT,T,G [25347,25357,25360] ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 95.1 41 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : TCGTTTTGTCAGTGGCTATCTCTACGATGCTGCCCTCGACGGTGGTGAAGTGGGGATGACTGGCTCTGGCGCTACCCATGCTTGGTTACAGGTTTATCTACCGGGGGCCGGTTGGCGTAATTATGATCCGACTAATCAAATTACCGCCGGCTTTGATTTAATTCGAGTGGCGATCGCTCGTCATCCCGGTCAAATCATACCTCTTTCTGGTTCTTGGTTTGGTGATGCTGATGACTATTTATCTATGGATGTTAAAGTGACCATTCGCAAGCTGGGGACGCTGCCGGATTTTGATCCCAGGGAATAGGTTGAATTTCGGGTTTTTCCTTGACTGGCGATCAACTCCTGACTCCCCCAAAGGAAAACTTACTACTTCACTAAGCTGTTCGTAATTTAAAGCGAATATTCCCGTTAGGTTGTAGCATTTTTATCGATTTTTGTCAAGATATATTTGACACAATTTATTAGAAAAAGGGTTTCTAAAAGAAACCCTTTTTCTG # Right flank : TACTTAACTATAAACGGGATTATTTCGGTCAAAGTTTTTGAAATTTTCCCTCTTGACCATTATTCTCGTCTAGAAAACCTAGAAAATAAGCACAATCATCAGAGTCATCAGGAAAAATTGTTAAAATTCTAGGTATTGATGATTATTTTTGGGATACATTCGATGCCAAAGACGACCAATTTGATTGATATTTTTTGTTACTATTCCTGTCACCGAGGTTTTATAGATACTTAAAATATCCAATTTTTGATAGGCTTTGTGAAGCCATGTTATGGCTAGGGAATCATCTTTATCTTCGGCAATTCTTCCCCAAACCTCGACATTTCTGTGATGCCAACTTTCTCGCCACTTAGCACTATTATCGGGAGTTATGGGGATATTTTGTCAGGTCATCCATTCTTTAGCAATAGTGCGAACATCTTTGATAAAGGGATGAACATGAGTTAAATCTCTGACTTTATTATCGTTGATTAAAGAACTTTTATCCCACCATTGCCAAT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 58687-65695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSW010000104.1 Microcystis flos-aquae FACHB-1344 contig104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 58687 37 100.0 35 ..................................... CCCCCAGGGAACACTCGGCTAACCTGAGCATCCAC 58759 37 100.0 35 ..................................... GAAACCGCAGGACCGAATCCCGTCCCCGCAGTCCT 58831 37 100.0 34 ..................................... CAGCATCGACACACTGCCAAGCTGAGATAAAGAA 58902 37 100.0 33 ..................................... GAATCCTAAAACGATTCTGCCGGGGGGGATTAA 58972 37 100.0 35 ..................................... CAATTTTGGGAGCAGGCTTTACGAGTAGCAAAACC 59044 37 100.0 35 ..................................... CGAATACTTCATCTGACCTCCTGTAGAATCGGCTA 59116 37 100.0 35 ..................................... CAGTCCATTTTCAGCGAGATCAGTATCTCTTTGAC 59188 37 100.0 37 ..................................... GAATCGCCGAATTGACATCGGCTAACCCATAACCCGA 59262 37 100.0 35 ..................................... ATTTCTTCCCAGGGAAGATCTGCAAGATTCCAATC 59334 37 100.0 36 ..................................... ACCTTCAGTGTAGGGGCTGTAGGGGGATTTAGGCTA 59407 37 100.0 35 ..................................... ACGCTGAGTGATCCGATGGAAGCCTTGCAATTGCT 59479 37 100.0 35 ..................................... TTTTGATGTTGCTGAAGCTAATAGATTTTTTAATC 59551 37 100.0 36 ..................................... GGAGCTACGCTCAATAAAAAATCATAATCATCTACG 59624 37 100.0 35 ..................................... CTGCAATTGCTTGAAAAAACGATCCGCGCTCAGGA 59696 37 100.0 36 ..................................... TATTGATGGTAAACTCTAACTATTTTACCATCAATT 59769 37 100.0 36 ..................................... ACTGGCAAGGATTGAGGCCTTAGAAGCTAAACCAGT 59842 37 100.0 36 ..................................... AATACACCTGCCAGATAACAAGTAACAGTTGCCAGC 59915 37 100.0 35 ..................................... TCGATATCCGCCGTATCTCTAGAAGCCAGCGGAAA 59987 37 100.0 42 ..................................... AAGGCATAAGTAGTATTAATGGTGTGAGGGTAAGGGGTAGAG 60066 37 100.0 36 ..................................... AAGAGTGTGGACTCGATTGCAAGCGCACGGATGAAC 60139 37 100.0 34 ..................................... TCCCAAGAATAATAGCTGATACCTGATAACTAAT 60210 37 100.0 35 ..................................... TAATTTTTGGCAATGGTAAGGCTGCCCATGCTCTT 60282 37 100.0 36 ..................................... AAAAGCATCTCTTTTTTCACCCTCGATCCGAACCGT 60355 37 100.0 34 ..................................... TCCCAAGAATAATAGCTGATACCTGATAACTAAT 60426 37 100.0 35 ..................................... TAATTTTTGGCAATGGTAAGGCTGCCCATGCTCTT 60498 37 100.0 36 ..................................... AAAAGCATCTCTTTTTTCACCCTCGATCCGAACCGT 60571 37 100.0 36 ..................................... TCACGAGGAATATTTCAGCCCGGTGTGCATTATCGG 60644 37 100.0 34 ..................................... CGTTATTTGGAGTCAGCGGGCTCTGGGGGGATTT 60715 37 100.0 34 ..................................... TTGTCCATGAGTCTCTCCAGTGTATTTTAGGGTT 60786 37 100.0 35 ..................................... ATGGGGCAAGGGGTTTCTTCCATCTATCATTCACC 60858 37 100.0 38 ..................................... TTTAGAGGCCCAAAAGGAGATCCTGGGCAAAATGGAAG 60933 37 100.0 37 ..................................... CCTTCAGTTGCCTCGCTATCCCACTTGTAGAAATCGG 61007 37 100.0 35 ..................................... TTTGAGAATTATTTGCCGGGGTGGACTCCGATGTC 61079 37 100.0 32 ..................................... ATTTTTGTTCATCGTTCTTGTTATCGGCTTTT 61148 37 100.0 35 ..................................... GAATTTGAATGGCGGTTTGAGTGACGGTCGTTGAT 61220 37 100.0 36 ..................................... CTAAGATTTCGGCTCTTTGGCACATTTGAGCCCATG 61293 37 100.0 35 ..................................... AAGGGCATCAACCATGACTTGTTCAATCCGTTCTC 61365 37 100.0 37 ..................................... AGAGTATGAACAGATCAATATTTGGCGTGATTACTTG 61439 37 100.0 37 ..................................... TCTGAGGGGCCAGTAGAAGTAAGCGATCGAGTGACGG 61513 37 100.0 34 ..................................... GAGGCTTATCTAATGAAGAACAGGGGCGGATGTG 61584 37 100.0 34 ..................................... ATGATCCTCTTGGTTTGATTTCAGAAAGGCGATC 61655 37 100.0 35 ..................................... ATTGTTACATTCATAGATAAATTGCCCAGTAAAGA 61727 37 100.0 35 ..................................... CTTACTATTGCCTAGTGTTTGCCCTCTCGTGAAAA 61799 37 100.0 40 ..................................... GTCGAAATTTCCCCCGGCTAATTATCGAAAAGTAAAGCGA 61876 37 100.0 35 ..................................... AAGAGAAAAAACTTTCCTGCTCTAGGGTGGATCAA 61948 37 100.0 35 ..................................... TGCGTTTGATTTTGAGGGTAGTTGTACAGGCACTT 62020 37 100.0 33 ..................................... TATTTAGAGAGTATTCGGGCTTTTCAGGTTAGT 62090 37 100.0 37 ..................................... TCAACATCTTGCTGCCTCAAAAACTTAAGCAAGACAA 62164 37 100.0 36 ..................................... CTTTGGCGGCTTTTTTAGCTTCTTTTTCGGCAGCGT 62237 37 100.0 33 ..................................... GTTGCTCGAAATTCAAGAAAACCAAACAATCGA 62307 37 100.0 34 ..................................... AACTACCAAAATATAGAAAAAACATTGACTTTAA 62378 37 100.0 38 ..................................... AGTATCCCCAAGGTAGTATCGCCAATTTTCCAGGGACT 62453 37 100.0 33 ..................................... GCCGGAATGCTGGAAATCTAAGAAGTTTCCCCG 62523 37 100.0 34 ..................................... CGGAGATTAAGGGAGCCTTAGCGCAAAAAAGCTT 62594 37 100.0 34 ..................................... TTGCCATTTTAGCCCATCCAAACAAATTTGTGTT 62665 37 100.0 34 ..................................... TCTTTAGCCTTGCCTGCAACTAAGTTACCAAGTG 62736 37 100.0 44 ..................................... GATATTCAGGAGGTAAAATAGGGACGATTCGTGAATCATCGTTC 62817 37 100.0 36 ..................................... TCTTTGGTCGCTTACGCGATGCGGGAGCGGAGGGGA 62890 37 100.0 40 ..................................... GATGCCATTTCTGGTGTTTCATTACCTAGTAATTCTATTA 62967 37 100.0 34 ..................................... CGGAGATTAAGGGAGCCTTAGCGCAAAAAAGCTT 63038 37 100.0 34 ..................................... TTGCCATTTTAGCCCATCCAAACAAATTTGTGTT 63109 37 100.0 34 ..................................... TCTTTAGCCTTGCCTGCAACTAAGTTACCAAGTG 63180 37 100.0 44 ..................................... GATATTCAGGAGGTAAAATAGGGACGATTCGTGAATCATCGTTC 63261 37 100.0 36 ..................................... TCTTTGGTCGCTTACGCGATGCGGGAGCGGAGGGGA 63334 37 100.0 40 ..................................... GATGCCATTTCTGGTGTTTCATTACCTAGTAATTCTATTA 63411 37 100.0 34 ..................................... TGATCGCATCATGCTGAATTCTTTATCTCAGCTT 63482 37 100.0 34 ..................................... TTCCAGTCGCTTGCCACTGCCTCACCCGATTGAG 63553 37 100.0 34 ..................................... ACCATCACTTGCTGACCCGCAGTCCAAGTGACAG 63624 37 100.0 44 ..................................... TTCCAAGAGGTGTGACACCTGAGAAAGTGTCACAGTTGCTCCCC 63705 37 100.0 43 ..................................... AGCGGAAGTAATCATCACCAAACACCGTAACGGTCCCACCGGC 63785 37 100.0 34 ..................................... TTTTCTGACAGATTTCGGAACTGATATTTTTGTG 63856 37 100.0 34 ..................................... CGTCAAGGGAGAGCCTTGGCTGATCCGCTTTTTT 63927 37 100.0 36 ..................................... AACACTATGTATCGATCGATTATGGTTGATAATATC 64000 37 100.0 35 ..................................... CAGATATTGTGATCGAGAAGGTTGAAAAAGTCACC 64072 37 100.0 36 ..................................... TTATATCCCCACCGAAAACCTCAAGGAAGTTAAACA 64145 37 100.0 35 ..................................... GAATCTCTTTACTCAAGGTTAGATGAACTACAAAA 64217 37 100.0 35 ..................................... AATCTCGACCGACTCTATTTGATGATTCTGCTATC 64289 37 100.0 35 ..................................... TTCCAGAGCCACAATGTAATTGGGGAGGCAATTGA 64361 37 100.0 36 ..................................... CGCCGGAATGCTGGAAGTCTAAGAAGTTTCCCCGGG 64434 37 100.0 35 ..................................... GAAACAAGTGAGATTTTTGAGGCGATAAATCGATT 64506 37 100.0 34 ..................................... CCCAGTAAATCGGCTAACTCCTCTTCTAGGGTAT 64577 37 100.0 35 ..................................... AGGGTAAGCTAGAACCGATTTCTGAATCCGCTATT 64649 37 100.0 35 ..................................... TATCAGATTCATCGATTTTTACAGCATATCGGATG 64721 37 97.3 35 ....................................G CTCAATCAAACGAATCGTACCAGCCACATCCAGCC 64793 37 94.6 35 .......................T............G GCTTGATAGAAGATTCAATATCAGCAGTATCAACC 64865 37 100.0 35 ..................................... AACCTACTCTAGAGGCTAACATGACTGATCTAATT 64937 37 97.3 35 ....................................G CAATCCCTAGTAATCGCCTCCCGTTGAGGATTAGT 65009 37 94.6 38 .......................T............G ACTTCCTCTGGAGTAAAAGTAAACTGCTTAACCTGAGA 65084 37 94.6 34 .......................T............G TTGTGATCAACCTTTGCCTGCTTGCCAAGCTCTC 65155 37 94.6 35 .......................T............G TTTTTCACCGCGTTTTTGCTTAACCTTGGCTTGTA 65227 37 94.6 34 .......................T............G CCCGGTTTGTTTTTTTGTTCATCATTTTTTAAAA 65298 37 94.6 37 .......................T............G ATGAGTTTTAGTGAAGAAAGATTAGATTTAGGATACG 65372 37 94.6 37 .......................T............G GAAAAACTGCCTAATTTCGATACATTCACACTTAGAG 65446 37 94.6 33 .......................T............G GGATTCTAATAAAAAGGGAGATTCTAGGCAAAG 65516 37 94.6 34 .......................T............G CTTATCAACTGATTATTCGGGGTAAATCAAAGCT 65587 37 94.6 34 .......................T............G ATTTAAAAAGGCACGCTGGCAGGCGAGGAAATGT 65658 37 70.3 0 ..................GAA.TAC..A..A...TTG | G [65675] ========== ====== ====== ====== ===================================== ============================================ ================== 97 37 99.1 36 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : TTTTGTTATCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGCATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGCAGTGGGTCACTTGCTGTATAATTGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAATCCCATAGCGTATAGCTTTTACCACTGGGC # Right flank : ATCCTATAATAATGGGAAAATCCTCAGAGTGAGGAACTCGCATGAAACCAGCATCCCTGATTCAACTAACCGATAGTCTGAAAGCCCTTTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //