Array 1 232490-227573 **** Predicted by CRISPRDetect 2.4 *** >NC_015422.1 Alicycliphilus denitrificans K601, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 232489 36 86.1 30 T...AAAT............................ GGTGCAGGGCGCGCCCTGCTGGGGGTCCCG 232423 36 100.0 30 .................................... CTTGCCGGCATGCACCAGCAGCTCGCCCCG 232357 36 100.0 30 .................................... CAGGCCAGCCTACGCAGAGCGGCCCGCAGT 232291 36 100.0 30 .................................... TCCGTCAGCCGTTGCCAACCTCATGCCCAG 232225 36 100.0 30 .................................... AAAACCCGGTCGCGTGCCATGAGCACAGTG 232159 36 100.0 30 .................................... GGACAAGTTCAGCAAGGAACGTCGCGAAAA 232093 36 100.0 30 .................................... CTGAATTACGCATATTTGCATAATGCACTC 232027 36 100.0 31 .................................... TGTAGGCTTTCGCCTCCAGCATCGATTCCGG 231960 36 100.0 30 .................................... CCGTGGAGCCGGTGCTTGTTTTTATGGCCG 231894 36 100.0 29 .................................... CAGATCGACGTGCAGACCGGAGACACCGT 231829 36 100.0 30 .................................... AGGGCGCCGAAAAAATCCTCAGCGCCCAAG 231763 36 100.0 30 .................................... ACCATGCCGACCAACGAAACTGTACCCATT 231697 36 100.0 30 .................................... CTCGCCCCCGTTCTTCCGCCATCCAGCAGA 231631 36 100.0 30 .................................... CTTACCGGGCAGGCGGATGCTGACGCCCAC 231565 36 100.0 30 .................................... GCCCCACGCGAATGCCATGGCGTTGAAATT 231499 36 97.2 30 ..........................T......... ACGGCGGCGGCGCGGGTGGCAACATGTCCA 231433 36 100.0 30 .................................... GCTGCCGGTGCGGGCATTGCTGCCGGTGCG 231367 36 100.0 30 .................................... TTGCGCCAGCATGCGATCCTCCCTTGGAGT 231301 36 100.0 30 .................................... CCATTGAGCCCGCAGAGGATGCGCGACATA 231235 36 100.0 30 .................................... GAGTGGTGTGCAGTTCCTGCGCGACGGCGA 231169 36 100.0 31 .................................... TCAAGACGGCAGTCATTGAGGGCGTAATCGA 231102 36 100.0 30 .................................... CAGGTCACCGACGACGATGCCGTCTACGCG 231036 36 100.0 30 .................................... GCGGATGGCCTGTCCATGCTCTGGCTTGTG 230970 36 100.0 30 .................................... CAGCGAGCCTGGCGAAGGCGAGGTGCTGTA 230904 36 100.0 30 .................................... GTCCACGCAGAAACGCCTTGCCACGCTGTG 230838 36 100.0 30 .................................... AGCAGGCCGCCGCGATCCCTGATTACCCTG 230772 36 100.0 30 .................................... TCCTTGGCCGACGTGCATGCTTATCTGTCG 230706 36 100.0 30 .................................... AAAACGGTTGAGGCGCAAGCGACCATCATG 230640 36 100.0 30 .................................... AGCCGTCGGCAGCGTGCACCTCCTGGCCCG 230574 36 100.0 30 .................................... CATCGCCCCGATCCATTGCCGCGCCCGACA 230508 36 100.0 30 .................................... TGGCCGAGACACTGGGCTGCAGCCCGGTGT 230442 36 100.0 30 .................................... TGGCAGCGCTGCAGGGTTTCGTTGGAAACG 230376 36 100.0 30 .................................... TTGAATGTCCAGAGCCAACACGCTGCTGGA 230310 36 100.0 30 .................................... CGCGCGCTTGCTTGGCGGCCGAGCGCTCCT 230244 36 100.0 29 .................................... CGGCGCGCGGAGCTGATGACGAGAATTGC 230179 36 100.0 30 .................................... AGGTCAATGCACTATTCCTGGCTTTGCGTG 230113 36 100.0 30 .................................... GAGTTGGCCGAGGATTGCAAGGGGCGCTTG 230047 36 100.0 29 .................................... CCTCCTGCAATTTTCCAGCGCCGCGCGGA 229982 36 100.0 29 .................................... GGTGCGCCGCGTGGTGTTCTTCCTGCAGC 229917 36 100.0 30 .................................... CAGGCTGATCGTGAACAACCTGTGGTCTAG 229851 36 100.0 30 .................................... GATCGGATTCATCCACATTCACACCTCCCT 229785 36 100.0 30 .................................... TACGGCTTCGGGCTTGTATCCACGCTGGCG 229719 36 100.0 30 .................................... TTATCCCGGGGCCTTTTTAACGATCTTTAG 229653 36 100.0 30 .................................... CGCCTCATAAAAAACAAACAGCCCGACTGT 229587 36 100.0 30 .................................... CAGCAGTTCGGCGTTCAACCGGGCTCTGCA 229521 36 100.0 30 .................................... CAGCCAGTCGGGCGTTTGATAGTCCGGCGC 229455 36 100.0 30 .................................... GCACGGGTGTGATGATGCGCGCCACCTGGT 229389 36 100.0 30 .................................... ACACCGTTGCGCCACGCACCGCGCGCATGC 229323 36 100.0 30 .................................... CCGCCAGCTCGGCGAACTTGATAGGCGGTA 229257 36 100.0 30 .................................... CACGCGCCCGGTGATGATGTCCTCACGGTA 229191 36 100.0 30 .................................... GCTGATCGACGTCACGGGGCCGTGGCGTTA 229125 36 100.0 30 .................................... CGGCTGGAAGTTCTGGGGCAAGTTCCTGGA 229059 36 100.0 30 .................................... CGGCTGGAAGTTCTGGGGCAAGTTCCTGGA 228993 36 100.0 30 .................................... TGATCGTGCCGTTCTCCGCTGCCTTCACTG 228927 36 100.0 30 .................................... CCGATGCGCCGGCGCACGCGGCGCCGATGA 228861 36 100.0 30 .................................... CGGACGCCTACGCATGAGCTGGCCGGCAAC 228795 36 100.0 30 .................................... TTTGTGCCGGGTCTGGCGCATCGGCAGATG 228729 36 100.0 30 .................................... CCGCGCAACCGATAACGCGTTCCTCGTGCT 228663 36 100.0 30 .................................... CCAGGGCTTCAGCACCGATGCTCAAGGCAA 228597 36 100.0 30 .................................... GCTCACCGATCTGGTGAACGAGAACTACGA 228531 36 100.0 30 .................................... TCCCGACTGGCACGCCGCAGATGCGGCATA 228465 36 100.0 29 .................................... CATCGGCTCGGGCACCTATGCCGGCTTTT 228400 36 100.0 30 .................................... GCCGACCATGAAAACTGGGCGGTCGCCGAT 228334 36 100.0 30 .................................... CCCCGCACACGCCGCACGCCGTGCAGACCG 228268 36 100.0 30 .................................... GCGGCGCGAGCTCCGAAGCCGACAAGCTCG 228202 36 100.0 30 .................................... TTTCTGCGGCCACGACACTCCGGAGTTCGA 228136 36 100.0 30 .................................... GCTGGTGGCTGTACGCCTCTGCCTGGCTCT 228070 36 100.0 30 .................................... GTTCCTCTAATTTTCACGTCCGCGAAATAT 228004 36 100.0 30 .................................... GCTGGGAGCGGCCCTAACACCCCCTGTAGC 227938 36 100.0 30 .................................... ACTCGTCCGATCCCTGCAAAAAGTTCGCCA 227872 36 100.0 30 .................................... TGCCCAGCCTTGCTCGAACGTCTCCGGTGT 227806 36 100.0 30 .................................... TGCCCAGCCTTGCTCGAACGTCTCCGGTGT 227740 36 100.0 30 .................................... CGCATGGCGGGAGAGGCAGCGGCCATAGCG 227674 36 100.0 30 .................................... AAGATCGTCATCAAGCATCGCTACACGGAT 227608 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 75 36 99.8 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Left flank : GCCGACCCCCTGGCCCGCCTGCGCGAGCTCTACCGCGACCGCGACCCGCTGTACCGCGAGACCGCGCGCTACGTCATCGAGACCGGCCGGCCCACGGTGAACACGCTGGTCAACATGGCCATGATGCAGCTGGAGATGGCACCCGGCAAGCCAGACCTCAACACGTGAGGTACTTTCCGGCATATATCTGCCGCGCTGTGCCCAATGTGCGCCAGCGCCAGTTCCACAGGCACGATCAAGATACGGCAAATATGCATCTCACAGGCGTGCTGCAGTGCCTGCCGGTGGCGACCACACTGGCGCGCGTGGGAAAGTCGTGTATGTGAATGGGTCCGACAATGCAAGGTTCATTGCACAGCCTTTGGAAATTTCAGTAAATACATTTACAACCTATAATTTTAACAATCATACCCTCAATACCAACGCCATCCCCAGGCGAATAAACTGCAAATATTTGAATCATTCAACTCCCTATTCACAGCTCGACATAGATCCAAACC # Right flank : GAGATCGCGCTAACCCCTTGATTTTTCAAGGGGTTTTGTGCTTCTAGGCACCAGAAAATAGGTTGCATGGTCAGAAAAGATCGAACTGATCGGGTGCTTTTTGGCCTGGTTGGCGACGCTGGCCATGGAAGGTGATGGCACGTTCGTACTGCTTGTCTGTGAATTGGAAGATATGGACTTTTCCGCCTGGCGGCAAGGCCGTTTCCACGTTGCGACACAGGGTGTTGATTCATCAGCACAACTGAGCCAGTGATCACGTCGAATACTGAGCCACTGGGTTGATGGATGTTCTGGCTACTCGGTTGTGGATAAGTCTATCGGGTCTGCTGCTTTTCGATCTCCTTTCTGAGCTTTGTTGCGTTGCTTTGGCGGTGCCGCACCAGCGGCACTGGAATGCTTGAATCGCCAGCTCTCATTGCCTGTCTCCACGATGTGGCAGTGGTGCGTGAGTCGGTCGAGCAAGGCGGTGGTCATTTTGGCGTCGCCAAAGACGCTGCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //