Array 1 13085-10844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIK01000028.1 Desulfonatronum thiodismutans strain MLF-1 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13084 37 89.2 36 .AG..................A.............T. ATGCGCTCGTCCATCTGGCGCTGCATCATGTTGTTG G [13079] 13010 37 91.9 37 .........................A...T......A CAGCCAGCCGCACTTCCTTAACCCCGTTAGAGATGTT 12936 37 100.0 35 ..................................... GACGCCGGACAGCTCAAGGCCCTGCCCGTGCTGCG 12864 37 100.0 38 ..................................... GCCGATCATTTCAGCGAGTGTCCGCGTGTACGCCTCGA 12789 37 100.0 36 ..................................... CGTGCGCCTCCCGGCCCAGGAGCCCCAGCCCGTTGA 12716 37 100.0 38 ..................................... GTCGCGGGGAGCCAGGCCAGCGCCCGTGGCATTGACTC 12641 37 100.0 37 ..................................... GAGAGTACACCTACGGCGAACTCAAGGACAACCAGGA 12567 37 100.0 35 ..................................... ATTTTACGTCCGTTAGGACCAACCCCTTCAACATT 12495 37 100.0 36 ..................................... GACGTGGTGATGGTGAATATGGTTCAGCCCGGACCA 12422 37 100.0 35 ..................................... AAGATATATTCCGCATCTGACGATGCGGTTAGCTC 12350 37 100.0 36 ..................................... TCTAGGCTTGATATTTCCCATGACGTATTAATCCAA 12277 37 100.0 37 ..................................... CGAACGCGCCCCGGTCCATGCCGATGCGCAGGCCCTC 12203 37 100.0 37 ..................................... AACGCCTCGGCAAGCGCAGGACCTACGACCTGACCGT 12129 37 100.0 36 ..................................... CCGAATTCAGAAAAATAACCGCACTTCGATTGACTA 12056 37 100.0 36 ..................................... CTACAACGACCTGCCCATCATGGTTGTTGACTCTGA 11983 37 100.0 37 ..................................... ACGAGCAGGACTTGGCGTCGCGGCTGGCGTTCTTCAG 11909 37 100.0 36 ..................................... ACGGCGTTGGATTTCGGCTCCTCCTTCGACGCCGGG 11836 37 100.0 38 ..................................... CCCTTATGGAAGGAGAGGGGTTCCTGGCAATCACATCG 11761 37 100.0 35 ..................................... GCCAAGCGCCCGGAGACGGCCAGTCCGGATTACGT 11689 37 100.0 37 ..................................... ATCGGCTGGCTGTCATCCAGCGCGGCCCGCCTTGGCG 11615 37 100.0 36 ..................................... AAGAATGGAGCCAAAACACTGATAACTGGGTAGCAA 11542 37 100.0 36 ..................................... CGGAAAGGACCGGTTCCATGTCTGGCCGGATCAGGG 11469 37 100.0 36 ..................................... GTTGAACGACTACGAAAACAATTTGCCCGTGGACAA 11396 37 100.0 37 ..................................... GCGAACCTTCTGGGACGCGGACTTGCTCCAGGCCGCA 11322 37 100.0 37 ..................................... GTTGTCGAAATGGCTCCAGACCTATATCGCCAGCCAC 11248 37 100.0 37 ..................................... GAGCCGGATCTTACGCTGACGGAAAATGGAATGCTGG 11174 37 100.0 35 ..................................... TTCACCACCACATAATTTAGTTCAGCTTAAAATTC 11102 37 100.0 37 ..................................... ACCGGGCCGCGCCCGGGGCCACGCCGACGCACACCCA 11028 37 100.0 36 ..................................... TTTCATCAGCCGGTCCAGTTCCTCCCAGTCCTTGAG 10955 37 100.0 38 ..................................... TTCGGGCTTCTCTCAAATGACCAAACCCTATTTGCCCG 10880 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 99.4 36 GCTTCAATGAGGCCGGGGCAGGAATGCCCCGGAAAAC # Left flank : GGAAGCGGTCCTCCGCGACCCGTTCCAAGGCATCGGCAAACCCGAACCCCTCAAACATCTCGCCTCCGGTCTCTGGTCCAGGCGTATCACCCAGGAACACCGCCTCGTTTATCTGGTCCGGGATGAACGGATCGATTTTCTCCAGGCCAAGTATCATTACTGATTTCTTGTCTCGCAAACAACTCAAACAGGAGGCTGACCTGCTCGCCAAATTGACCTCGAAAAACCGGATCACGATCCCCAAGACCATCATGAACAACCTCCCCCCGGTCGACTATTTCAATGTCGTCCTTCGAGACGGAACCGTCGTTCTGGAACCGATTCAGACAGCCAATACGGAAACCGAATCCATCCGCCTCAAGATGCGCGAACTCGGCCTCACCGAGGACTCCGTCGCCGATGCCGTGCGTTGGGCGCGGGACAAGACATGAAGGTCGTCATCGACACCAACGTGCTGGTCTCGGCGTTGCTTTTCGGCGGCCAAGCCGAGGGTACGGGGC # Right flank : GGTTCGTGTTTCGTGCCAGATTTTACGCGGCTCGTCGAGGTGATTTGCGAGGGGTGGGGGGCTTGAGGTTCGAGTTGACGAATGGCGCATGTCTTTTCGTCTTCATCATCAGTATATCCTCCTCAATTTTCAAAGATTCGCGCCTTGCGAGCGCTCACGGGGTTTTGTACATCACCGAAGCGCTCGCCGTGATGGGGCGGGTTTTCAGACGACCACGGCGTCGTTTCTCACTGGCTCGAAGCTCCCGCCGATGCTTTTGACCTTCACCTGGACGCTTTCCGCCGGGCCAAGGTCCATGATCAACACATGATCCTCGTCCTGCTTGACGATTCGGCTGACCGCGTCCTCCAGGCGCAGCTTGCGCACGGCGTCCAGCCGACACTGGAACACGGAAAGCTGCAGCCACTCCCCGTAACCATGCATGGCCTTGTACAGCTTGCGCCAGCGGCGCTGATCCCGGACGTCGTAGCAGACGATGTACAGCCTTTCCATGTCCGGCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCAGGAATGCCCCGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.30,-17.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 89016-89346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIK01000006.1 Desulfonatronum thiodismutans strain MLF-1 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 89016 37 100.0 37 ..................................... ATCCAGGTGGTTGGATGCGGGACATACCTTCCGCCTT 89090 37 100.0 37 ..................................... TGCTTCCCGGCGAACGGCGAGCTGACCTCCTAGATGT 89164 37 100.0 36 ..................................... CGTCTGCTCGGTCTCGGACTTCACCACCACGTCCAC 89237 37 100.0 36 ..................................... GGGTGCGGCATTTGCGGGTGTTGGGGGAGTGGCAGG 89310 37 91.9 0 ......................A..........A..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.4 37 GTCTCGGCAAGCTTGGTCAGTGTTGGGTGATTGGCAC # Left flank : ATTTTTCGCACCTGACAGGTGGCTGCCCTCCGAGATCTATTGGTCGCGGATACGACGACGGATATGGCAAGTCACGCTCGAAAGAAACTCCAGCGGAAGACAAGAAAGGGCGGAAATGGACGAGATGCCGTACTGAACGGCGCATGCGCCCATGCCGGACAATTTTCCGCCTTGCCCCACGCATAAGAATAGTCTACCGACGAATCATTGGTCTACAGGACCAAGGAAATCCGGCGGCAGTGCCCCGACTGCCACAAACAGTCACCCGCCGGTGATCATTCATAACTGATCTTTGACGAAACGGCTTTCCGCCTGCCCCTGGCGTTCGAGCGCTCTGGTGCTTGCAAAATGCCCGTTACCGCTCGCACTACTCAACGCTCCGGGATATTTTTACTTTCAAGTTTTCTTCATGGCCTGGAGGGGAATGTTCCGCGCCGAACCACGGACCTCTCGAAAACATGGTTGGAAATTTGCGAGGAGCAAGGCATTCCCGGCTCGAG # Right flank : TCAGTGATGGGTGATTGACACTAGAAGCGCACGGCCTAGGTTACGTTCTTGGGGAAAGCTAGGCAAGTTTTGGATGATAAGAAATAATCATGTCACAAGGAGGGAGTTTTTGTGGCGAGAATCACCATGTATCGAATTCAAATCAATACAGAAGCTATAAGAAAGGGTGAGCCTATTGCCTGGGTGCATGACGGCCGTCAATGGATATCGACAGCTAACCAACCACAAGCTGGTTTGTTGTTGAGTGAAGAAATTGAATCAATTAGAAAGCTTGGATTTCAAGTAGATCTATTGGAAGAGTTCATTTTTGACGATTTGAAATAGCTCTTTTCAGCAATGAAGGCATTGAAGGGGATATGGCCCTTCCGTCCAGGCTCGCCAAGCACCACTCACTTCGAGATATAGTCGTTGTAGGACTGATAAAAAGCGTCCACCAACCTCACCCGCTCTTCAAGCTCAACAAACCGCCTCAAAATCCGGGACAGCGGTACCCTGTAGCC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGGCAAGCTTGGTCAGTGTTGGGTGATTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 72797-73705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIK01000020.1 Desulfonatronum thiodismutans strain MLF-1 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 72797 33 100.0 34 ................................. TCGTCAAGACTTACGACGGGCTGAACAAGCTGAT 72864 33 100.0 34 ................................. AGTGAATACGCCGCGAAGTTGAAGGCGATACAAC 72931 33 100.0 36 ................................. GGCGTAACCGCTGATATTTCCAATCCAGTCGGCGCG 73000 33 100.0 35 ................................. CCGCACCTTTTGCGCCGCCCGCTTGTACGGGTAGG 73068 33 100.0 34 ................................. TGCATAACGGCGAAGGTGGTCAGGACGGGGACGC 73135 33 100.0 34 ................................. TTGTAACCTTCTCCACGAAGAGCACCTGTCTGTA 73202 33 100.0 34 ................................. TTGCCAGATACGCGGTTTCAATCCAGACATAAAT 73269 33 100.0 35 ................................. CAGGAGTTCTTTGACGCAATGATCAAGCATGCGTC 73337 33 100.0 35 ................................. CTCGTCCTTCAGCCAGTCGATTTCAGCGGCGCGTT 73405 33 97.0 34 .............T................... TGGATCGTGTTGCTACTGCTATCGGGGTGCGCGA 73472 33 97.0 33 .............T................... ACGCTGGGCAAGTCCGGCTCCATGCAGACCCTG C [73476] 73539 33 97.0 34 .............T................... GCTCCGCCATCGATCCTGATCCCGGCCACGGCCT 73606 33 97.0 34 .............T................... ACCTACCTACGAGCGAGGCCCACAATGGCAGACC 73673 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.1 34 GTCGCCCCCCGCGCGGGGGGCGTGGATTGAAAC # Left flank : GCCGCTTATCTGGAGGTGATGCAATCCCATGTTCGTCCTTGTCAGCTACGACGTCTCCACGTCCGACCCCGGCGGTCCGGGACGCTTGCGACGAGTGGCCAAGATTTGCAAGAATTTCGGGCAGCGTGTTCAATTCTCGGTGTTCGAGTGCATTGTCGATCCGGCCCAATGGACCAAGCTGAAACAACAACTGCTCGACGAAATCGACCCGGAAAAGGATAGCCTGAGATTTTATTTTTTGGGTTCAAACTGGCGGAGGCGGGTGGAACATGCCGGAGCAAAAGAACCCATTGATCAGGAGGGCCCGTTGGTCATTTGACCGAGTCGCGAACCAGGAGCGTCCGTAGAAAATACGGTAGGTTCGCGCTAACCTTAACAGCTTGTTTTTATTGTTGTTTTTGCGAAAAGCGTTTCTTGGTGTCCTTGGGACTCCTCCCAAATCAAGAGTTCGCGAAAAATCGGCTCCGCGAGCTTCGTGTATCAAGCCTCGTAAGCCGACA # Right flank : CACGTAAAATTGAGGAGCGAGTAGGAGGATAACGTACCTGATGAAGCAACTAGGAGGGGCTTGCTGTATTGCGAAGGGTTGCAACGTCGCTTCATGCCCCGGCGGTATTGGAAGTATTTGGTGGAGCGGCCGATCTGAACATTCGGATTGAGCGGCTGAATAAAGCGGTTGAACCGACCGATTCAGCACGTGAAGCTTTTGATTTCTCTCACCCGGTCGGCTAATGATGCCGAAGACGCTGCGTTGCTTCGCCGACGGACGTCGATTCTTCGCTCCCCATTATTTTCGCTATTTTAAGACGGAGGACATCGTGTCAAAGTGCATCCCATCCTGCGGTCTCGCTTCCAGCCGACCAATTTGCGAAGAGCGCGACGCCTGCGCGATTATCGCCTTCGTGGACAAGCGCGGCCGCGTGACCCATGCCAATATCGTCCGGACCATCGAGGCCCTGAAGAAAATGGCCCATCGTTCCGGGGACATCAACGACGAGGGCGACGGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGGCGTGGATTGAAAC # Alternate repeat : GTCGCCCCCCGCGTGGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //