Array 1 8301-10726 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLV01000003.1 Bacteroides pyogenes strain KG-32 NODE_3_length_122038_cov_28.416894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8301 47 100.0 30 ............................................... CGAACTCATAGGCTCCGCTTGCTGCTTTTG 8378 47 100.0 30 ............................................... AGCACAGCGTAGGTGCTACCAGTTTTCTGT 8455 47 100.0 30 ............................................... GGTCTTGCCCATTTCGCGGCGTATGGCTAA 8532 47 100.0 30 ............................................... TCTTTGTATTGCTGGGTATACTTCCAAACA 8609 47 100.0 30 ............................................... ACTCCTATTCAGAATAATCCTCTACAATTT 8686 47 100.0 28 ............................................... CCAATGACCAAATGTCTTCATCTACGAC 8761 47 100.0 30 ............................................... TATTCTTTGACTCGGAAGAAATCACCAAGG 8838 47 100.0 30 ............................................... AATGCTGAGGTTTCTAACCTGCAAGGTCAA 8915 47 100.0 30 ............................................... TGATAACTACTGATTGATACCTATTGATTG 8992 47 100.0 29 ............................................... TATATCAAATATATGGTTTATATTTGCAT 9068 47 100.0 30 ............................................... GCCAGAACTTCATCGAGGTAGCCAGTTTTG 9145 47 100.0 30 ............................................... GACAAACGGAGAACGACTGTGGAGAAATTG 9222 47 100.0 30 ............................................... ACGGATTGCTCGGGTTGACCGGCATAAATG 9299 47 100.0 29 ............................................... TAGCCAAAAGATAGCAGCTGTCGTATCAG 9375 47 100.0 29 ............................................... ATAAAAATGCTTACATTATATTTATTTGT 9451 47 100.0 30 ............................................... CAAATCGAAGATTCGCCCTTTAAGCATCTT 9528 47 100.0 30 ............................................... GATCTCGCCATACTCACTTACTCATTTCGT 9605 47 100.0 30 ............................................... AACGGATATACTGTGAGTTTATGTGGGATT 9682 47 100.0 30 ............................................... TGTAATTGCTTCATTCATTGATTAATTGTT 9759 47 100.0 30 ............................................... TCATGCTTGATTATTCGCTTTTTTCGTGAT 9836 47 100.0 29 ............................................... AAATTGGTTATTAGTTTCTTTCTTATGAT 9912 47 100.0 29 ............................................... AAATGCTTATAAAATAATAATTCGGAAGA 9988 47 100.0 30 ............................................... CGGACTTGGATATGTCGTATTTATCTATCT 10065 47 100.0 30 ............................................... TAGGGGCATTATAGGATCTTTCCATATCAA 10142 47 100.0 29 ............................................... GGCGGTAGCATATAAGGGAATTTTAAAAA 10218 47 100.0 30 ............................................... ATGATTTGCATTTGACATCGTAAAGAATGC 10295 47 100.0 30 ............................................... GCATATATCAGAATATGGAGCAAGTGCTCA 10372 47 100.0 29 ............................................... AGACGCTATAGCCTTGACCTTACTCATCA 10448 47 100.0 30 ............................................... TGTAAAAAGTATCGGGTATAATGAGAACAA 10525 47 100.0 29 ............................................... GGCGGTAGCATATAAGGGAATTTTAAAAA 10601 47 100.0 30 ............................................... CCAGGCGGCTGACACGTTGCATCAGGCTCA 10678 47 83.0 0 ..............C...............C.GCC.G....T....A | AT [10716] ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.5 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTGCCGACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGAAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGGCATTGTGCCAGTAGCGAGAACGCATCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAACAAAAAATCCCGTACTTACACGGGATTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCCTATTAATCCGTTGATTATTAGTTGTCTACTCTGATTCT # Right flank : AAAAGGAGTAAATAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCGGGCGTCATTTCTGTGCATTGCCCGATGTCCGCCCGGAAAATATTGTTTAATTGGCCTGTGACTTGTTTGTCGAAGATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCTGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCTCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACATTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1139-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLV01000070.1 Bacteroides pyogenes strain KG-32 NODE_70_length_11286_cov_23.465723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 1138 36 100.0 30 .................................... TAAGTTTTTTAGTTAACTTTTTCATGTTAG 1072 36 100.0 30 .................................... ATCCAGCTGATAGGCTATGGCACCGGTTTC 1006 36 100.0 30 .................................... AATCTTCATAAGTTGGTTCAAAATATTCCA 940 36 100.0 30 .................................... GATAAGGCAAATAGGGCTGTTTTGGATTTA 874 36 100.0 30 .................................... AGTAACAAACCTTAACCCGGGGCTTTACCC 808 36 100.0 30 .................................... TGAACTCATCGAATCCCTCGTTAGGATCTT 742 36 100.0 30 .................................... TAATCCTGCGAAGTCTAATAGGCGGATAAC 676 36 100.0 30 .................................... AGATAAAATAAAATGCCGCAAAAGCTATCG 610 36 100.0 30 .................................... CCATCCTGCACGCATCAGTATACGCGTCTC 544 36 100.0 30 .................................... TATCCTTACTTTGTATACTTATGTACCTCT 478 36 100.0 30 .................................... TAAAGTATTCGCCTCTTATTTCTTCACATT 412 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 321 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 13 36 97.7 32 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTG # Right flank : TGTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTGTAAGCCTCCGGTAAACCACGTATTTTCTGCAATCTCTTCGACCAGTATCTTTGTGCCCAAAAATAAAACTTATGATGACACGAGAAGAAGTTGCAGAAATTATTATGTACTGCAAGGAACACAAA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 14-1976 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLV01000105.1 Bacteroides pyogenes strain KG-32 NODE_105_length_2143_cov_7.979663, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14 29 100.0 35 ............................. GTTTCATTCTCTATATGAGATACAAAGTTTATTGT 78 29 100.0 35 ............................. TTTTTTTAGCTTGCGGATAAATCCACTTAACAAAT 142 29 100.0 36 ............................. ATATATCTTTGTTGCTTGGAATGTAACACTGGGATA 207 29 100.0 34 ............................. TCGCAAGGTCGAGGATAGCCTGTCGTTTTTGCTG 270 29 100.0 38 ............................. TCCCCTGATGTTGGCTTGCTCTACAAAATAGTAGTAGA 337 29 100.0 36 ............................. AAAAATAAACAATGGAATTATTGAGGCTAAGAAAGG 402 29 100.0 35 ............................. ATGTTTCATTACGATAGAACTTTTTCATCGTTATT 466 29 100.0 34 ............................. AACTCACCCGGAAACTTCTGCGGGCGCTCGGGCC 529 29 100.0 36 ............................. GGAGATAGACACAGCGAGTGGAATTGCATCATTTTC 594 29 100.0 35 ............................. TTGTTAACATTGTCGATTAAGAGTCTATCGCTATT 658 29 100.0 35 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAAG 722 29 100.0 36 ............................. TGAGTTGGTTTCTGATACTCCGTATAAATAGGCAAT 787 29 100.0 37 ............................. TTAGCTTGTTAATTGCATTGCGGAGCGACTCTACCTG 853 29 100.0 36 ............................. CCCTGAACTTCTCCGCTTCCGCGTTAGCTTCGTCCT 918 29 100.0 36 ............................. AACGCAAGGAAAATCAAAGGCTTTTTTATACTCTTT 983 29 100.0 34 ............................. AGAAATCGGCATAGGCGAGAAGTTCTATATATTC 1046 29 100.0 35 ............................. GAACATCCTGTAAGGCCTTATAGTATACACCATTA 1110 29 100.0 34 ............................. AACAACCAACTGGGTTAAAAACAACCCAAACAAC 1173 29 100.0 38 ............................. AGATGAGAGAAAGCAGAGTTCCAAAACAACTCCTCATA 1240 29 100.0 33 ............................. CAGCATTGGATGCGAATTCGATTATTCTACCTT 1302 29 100.0 36 ............................. GAGAGAAGTTATATGAGTTACTTGATGATAGCGAAG 1367 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 1430 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 1495 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 1559 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 1625 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 1690 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 1754 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 1818 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 1883 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 1948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : ACGGTGAGATTGTC # Right flank : AAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTTGTAAGCCTCCGGTAAACCACGTATTTTCTGCAATCTCTTCGACCAGTATCTTTGTGCCCAAAAATAAAACTTATGATGACACGAGAAGAAGTTGCAGAAATTATTATGTACTGCAAGGAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 51667-51823 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLV01000002.1 Bacteroides pyogenes strain KG-32 NODE_2_length_126949_cov_29.232042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 51667 27 96.3 39 .......................A... ACAGCCGGCTTGTGCCTCTATCATTTAGTCGCTGACGAG 51733 27 100.0 37 ........................... ACAGCAATATATGATGTTTTAGATGCTAAGGCTGTAG 51797 27 96.3 0 ..........A................ | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 38 GAAGCAGAGAGCTATACAGTCAGGCAG # Left flank : TCACTTCACCCGCCAGTACCACCTGTCCGGTCGTCACCAGTGTTTCGCAAGCTACTTTCGAGCTGGGGTCGTAAGCCAACAGCTTGTCAAGCACGGCATCCGATATCTGATCGGCTACCTTATCGGGGTGTCCTTCCGACACCGATTCGGATGTAAATAAGTATCCCATATCTTCTTTTTTTAGTTTATAAACTCCACGTTAAAAAAAATCAATAACAAGAAATGCAAGGGGAGGGGAAAGAGCATACTGCAATAAATCGCTGAAAACGGGAGTAATAGTCGTGTTTTAGCATTTTTTTCGGTGGTTGCAAGCTGCTCAAATCTATCCACACTTTCATTTCGGGGGACAAAGATAAGGAGAATCGCACAAAACACACACATATTCGCCCCAAATATACACACTTCTTATCTATATTTCCGATATTTTTGCAGTAGCCGTTGGGAAGAATATTCTTGTTCGATGATACACCGGCTATGCCGTGCGGGACTGCAACATGCAA # Right flank : GGCGTTTGTCGGGTATAGGCGGATACACTTTTTGCCGTCGTGGGGGGGGGGGTATGTGTGCGAAGTATACATGGGGGCATGTGATGGCACGGTGAGTATATATGGTCAGCATAGATGAGCATATATGGCCAGCACGGTGAGTATATACGGCCAGCGCGGTGAGTATATATGGATAGCGCGGTGAGTATATATGGTCAGCATAGATGAGTATATATGGCCAGCACGGTGAGTATATATAGTCAGCACGGTGAGTATATATATAGGCGGCACGGATGAAGAATATATAGCCGGCACGGTGAGTATATATGGCCAGCGCGGTGAGTATATATAGCCGGCACGAATGAAGAATATATAGCCGGCACCGATGAGTATGTATGAACAGCGCGCAGCAGGTGTTTTTTCTAACAGCGTTCTTTATCCAACAGCCCGGCATGAAGCTGTTCGACCGTTTTTCCCAGAACGGGATGAAGCAGCTGCGGGGCGATTTCCGCCAAGGGCTG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAGAGAGCTATACAGTCAGGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //