Array 1 531896-532249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025560.1 Listeria monocytogenes strain PIR00545 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 531896 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 531962 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 532025 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 532089 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 532155 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [532178] 532221 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 548544-551811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025560.1 Listeria monocytogenes strain PIR00545 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 548544 29 100.0 34 ............................. CCATCCACGTGGACGGGACTTCTTTTACATCAAT 548607 29 100.0 36 ............................. TCAGCAAACCAATCCATTCAAGACGCCTTTGTGTTT 548672 29 100.0 35 ............................. TAGTATCTCACTTCAAAACTATCTGTGTCACTATT 548736 29 100.0 36 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGACAAC 548801 29 100.0 38 ............................. CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA 548868 29 100.0 37 ............................. GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 548934 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT 548999 29 100.0 34 ............................. CCTGAAATGGGGGCTTTTTTGTGATGAAAAACAC 549062 29 100.0 35 ............................. TGGTATAAATCTAAAAATACACAAGTTGTAAATGT 549126 29 100.0 35 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAA 549190 29 100.0 36 ............................. CTAAAAAAGATTGGCAGAATGGAAATGTGTATGTGT 549255 29 100.0 34 ............................. CCATTACGTTTGCCTTGTTGTTAAAGCTTGCAAC 549318 29 100.0 35 ............................. AGCTGTAGCACCTTTCTGCAATCTTTCAGCCTCAT 549382 29 100.0 35 ............................. AAAGTAAATGCCGTAGAAACGTCCTCACAACCACA 549446 29 100.0 35 ............................. ACAAGTGGCTTAATATAAAACGTTGGTGCTGTGGG 549510 29 100.0 35 ............................. TGATAACCGTCAAATAAGTCAGTGTCAACTTCGTC 549574 29 100.0 35 ............................. GTTGTTTTTTATGTTTAGCATCCATAGTCGTAAGG 549638 29 100.0 36 ............................. TTCGAAAAGTCTGTTTTGCCCTATGTCTAATCCTTT 549703 29 100.0 34 ............................. ACATTCGAAGTGGAGTGGCAACAAAAGCCTTATA 549766 29 100.0 37 ............................. AAGTTAATTATTGAATGCTATCCAGAAAGAATAGAAG 549832 29 100.0 36 ............................. GTGCTTAAAACGATGACAAAAGTAGGAATAACATCA 549897 29 100.0 36 ............................. TTGCTTATAGAAGCTTATTTGTCTATTATTACCAGC 549962 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 550027 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 550093 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 550157 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCTGTTTTCAATTATT 550222 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 550286 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 550350 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 550415 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 550480 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 550546 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 550611 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 550676 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 550740 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 550804 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 550870 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 550935 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 551001 29 100.0 36 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAAC 551066 28 96.6 34 .....-....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 551128 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 551193 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 551260 29 100.0 37 ............................. ATTACTTAATTCTAGTTACGTTGCTGCGTTTACTTCT 551326 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAATAA 551390 29 100.0 37 ............................. CAGTGATTATGCTAAGACCTACACAATCGTTATCACT 551456 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 551521 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 551586 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 551652 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 551716 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 551782 29 93.1 0 .......................A....C | C [551805] ========== ====== ====== ====== ============================= ====================================== ================== 51 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGTGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGCTTCTGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //