Array 1 2705726-2706173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062122.1 Pseudomonas sp. ADPe chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2705726 28 100.0 32 ............................ AGGAACGCCAGGGATCCGTCGGTGAGCAGCAC 2705786 28 100.0 32 ............................ CACTTCTCCCACAGATCCAGGCGGTGCGGCCA 2705846 28 100.0 32 ............................ TTGCGAACCGGAATATGGGCGACGCAAAAGCA 2705906 28 100.0 32 ............................ AAGCGGCGTAGTTCGCCAGCCAGGGGCTTCCC 2705966 28 96.4 32 ............A............... ACATCGTGGCGCACCACGGCGATCAGGAACTC 2706026 28 96.4 32 ............A............... AGCTCCCTCAGCTTGTTGGTGTCGGTCATGGC 2706086 28 100.0 32 ............................ ATGAACGCCAAACTCCAACGCGCTCAAACGAC 2706146 28 67.9 0 .........T..A.......T.CTTCCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCGTCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAACGCACCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGGCCGATGAAGTGCTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAGCTGCGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGGTCGAAGAGGATGTTCTGGTAGTGCATGGGCGAGGCTGCGGCAGGAAGAATCGAACCGGAAGCATACAACTGGCCTCCGTACCTACCAAACGCCCATGCAATGACTTCCTGCCCTTTTTCTGAAGCCTCTTGCGAGTCCCATGAAAATCAATGAGTTGGAGAGGCCCCTGGAAAAAGGGTTATGCGTGTGGATAGGGTGCTTTCTCGTGGGAAGTCAGGGGGTTGAGGAGTAACATCTCTA # Right flank : CATGCCAGGCAGTCAAGCAAACCTCCCTCATTCCCTTCCCCCGCATGCAGCAGTAGCATCGCGCAATAATCCCGCTTCGGCACCCGCGACCATGGACGAATTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTACCACCTCCAGCACTGCCGAGTATTGGTCAAGGGCCTTCGTCTCGGCCATGCGTGGCGATACGGAGCAGGACTTCCGCCAGAGCTGCCTCGAAAGCCTCACGCGCACCGAGTCCCTCGACTTCATGATCGAAACGCTCAAGGCCGTGGCCGATACGCCGGGGGAAGGCAGTCGGTGAACGTACTGCTGATCGCGCAATGCGATAAACGCGCGCTGGCCGAGAGCCGGCGCATCCTCGATCAGTTCGCCGAGCGGCGCGGCGACCGCACCTGGCAGACGGCGATTACCCAAGCCGGCCTGGACACCCTGCGCCGCCTGCTGAAGAAGAGCGCACGGCGCAACACTGCCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2715138-2715645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062122.1 Pseudomonas sp. ADPe chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2715138 28 96.4 32 .....A...................... CTGATGCCGTACTGGTTCGCCGCCAGCGGCCG 2715198 28 96.4 32 .....A...................... TGGGAGGGAAGGTCCTAGTCAGCGCCGCATCG 2715258 28 96.4 32 ............A............... TACTACTGGTCGAGCACGCAGCGCTCCGCCAA 2715318 28 96.4 32 ............A............... TTGCGCGCCTGGATATCGGCGTAGGCCTCGAT 2715378 28 100.0 32 ............................ AAACAGATGGGGCATAAGGATTTCACGATGCT 2715438 28 100.0 33 ............................ CAGTAGTCGAACGGTAGGTCAGCCCCGTCCTGG 2715499 28 100.0 32 ............................ AACCTGCGCGGCGCCTACCTGGGCGGCGCCAA 2715559 28 89.3 32 ............A.....C........G TTCGCGCTCAAAAAGTACCGCGGCGGGATCGA 2715619 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGTTGATGGCGCAACCCTGGTTATCCGGCATGCGCGACCACCTGCGCCTGGGCGAACTGCTGCCGGTTCCCGCGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGCCTGCGGCGGCGGCAGATGCGCCGACATGGCTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCAGTTGCGCAGTCAGAGCAGTGGGCAGCACTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGGTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGGGCATTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGAGCTTAATGGCTGGTTTTCCTTTTAGCCACAACGAGTTGGGAGCTTGAGCCTCTA # Right flank : AGCACCGGACACTCGGAAGAGCATTCCTGCGCGCCTCATTGCCGTACAAACAGACCGGCGCCCAGTCGTCTCCGCGCTGCCTGTTGCCTTACTCGGCATAGCCCTCGGCGATGTGCTGGTCCTTCAGCTTCACGTAGTTGCCGGCGGTATAGGCGAAGAAGGACCTTTCCTTGTCGCTCAGCGGCCGGGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGCACCTTGCCCGGCGGCACCAGGCTGCCGGCGCCGAGGATGACTTCGTCTTCTATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCGACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCGGTTGCCGATGCGGATGCGGTGCATGTCGCCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //