Array 1 88432-85770 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVC01000005.1 Ligilactobacillus salivarius strain FJSWX_34J_L5 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 88431 36 100.0 30 .................................... TAATGAAACCGAACAACAGGACGTCTTTGA 88365 36 100.0 30 .................................... TGCAGATGACATTATCTCTTATGTAAATGA 88299 36 100.0 30 .................................... TGACCGTGTGATCCGGATATTCCCGAATGA 88233 36 100.0 30 .................................... CTTCGGCAAGGTCAACTAGTTTTTATTATT 88167 36 100.0 30 .................................... TAATAATTATGTAGTAGTTGCACCTAGTGA 88101 36 100.0 30 .................................... GTAAAAGGTTGCTTAGTAGCTAAAGGTTGC 88035 36 100.0 30 .................................... CTTGTGAAAGTTTGTTGTTTCATCTTCTGC 87969 36 100.0 30 .................................... TTACTTTAATAAAACCATTCAAAACATCAA 87903 36 100.0 30 .................................... TGTATCCATTAGGAATGCTTACCTCTTTAA 87837 36 100.0 30 .................................... ATATAATCGTTCTATCTGTCTATCTGAATA 87771 36 100.0 30 .................................... CATATTTGGGGTTAGTAAGCAAACACCGCC 87705 36 100.0 30 .................................... GATACTGAGTAAATTTCTAGGCTTGTTAGT 87639 36 100.0 30 .................................... GGTAGGAATGGGAATGAATAGAGATCATGT 87573 36 100.0 30 .................................... GGTATGACGGTGTTGATTATTGGGAACTTA 87507 36 100.0 30 .................................... CGGCTGAACGACGGGAATTGATTAAAGAAA 87441 36 100.0 30 .................................... TTTTAATATCTTCAATAAGTTCATCTCTTC 87375 36 100.0 30 .................................... TTCTAGCTTGTAAACGTCATTTGAAAGATT 87309 36 100.0 30 .................................... ACTTGAACTTGAGTTGTTCTCTGAAACTGA 87243 36 100.0 30 .................................... ATAATCCAGTTGCAGAAAAATTCCAAGATT 87177 36 100.0 30 .................................... ACCTGATGGAGTTTTACCACCCCAAACATA 87111 36 100.0 30 .................................... TGCTTTAGCTGGACACCATAATATTTTTAA 87045 36 100.0 30 .................................... ACCCAATGGAGTATTTAGACCCACAAGCAA 86979 36 100.0 30 .................................... TGGTGACAAACTGAGATACATAATCAACGC 86913 36 100.0 30 .................................... TTTATCAGCAATCAGACAAGCACAAGATCT 86847 36 100.0 30 .................................... CGACGGCTATCAACTGTTACAACTTCACCG 86781 36 100.0 30 .................................... CGGCACTGTCGGCATCATCATCCGTTTGCA 86715 36 100.0 30 .................................... CGACGGCTATCAACTGTTACAACTTCACCG 86649 36 97.2 30 .................C.................. CGGCACTGTCGGCATCAGCATCCGTTTGCA 86583 36 91.7 30 ..G.........G......G................ AGATAAGTCTGGACGTGCATGGTCCCTTGA 86517 36 100.0 30 .................................... TGAAAGATTAAAAGCAGAAGGTAGAGAGTT 86451 36 100.0 30 .................................... CCAGTGGTTGGCGGACGAAACCGTCCAACC 86385 36 100.0 30 .................................... GTAACACTGCGGATTTGGTCTTCGTGATCG 86319 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 86253 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 86187 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 86121 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 86055 36 86.1 29 ..........T.........T...A......G.C.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC T [86021] 85989 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 85871 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 85805 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 40 36 98.3 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //