Array 1 227250-227793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLW010000002.1 Listeria seeligeri strain FSL W9-0235 NODE_2_length_457543_cov_56.029117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 227250 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 227316 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 227379 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 227443 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 227507 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 227573 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 227636 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 227700 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 227765 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 234015-235523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLW010000002.1 Listeria seeligeri strain FSL W9-0235 NODE_2_length_457543_cov_56.029117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 234015 29 100.0 35 ............................. ACGATAGCATAAGCAAGAGCCTTATTTTTGTCGGT 234079 29 100.0 36 ............................. ACATCATTTAGAAATCATGTTGCGCGAGAAACCAGC 234144 29 100.0 34 ............................. TTCTGTCCTTTGCCTTTTTGACAATAGAGTCCCA 234207 29 100.0 39 ............................. AGTAGTATACTTATCGTAAACGGCTTTGGGTTTTAGTCC 234275 29 100.0 36 ............................. AAAAAAATATTGTCCTCGGAAATGTGATATAGTTCT 234340 29 100.0 36 ............................. ACTTAACAAGTCCTACCTTAACGGAGACTATTCACC 234405 29 100.0 37 ............................. TTGGTTGTCACTCCTATATACCGATTTGTTAGTTTTT 234471 29 100.0 35 ............................. GCGTTTAGTTTGTCAAATGTAGATCAAACAACAGC 234535 29 100.0 34 ............................. ACAGTCAAATAATTTATGAAGTCGCATTTCATGA 234598 29 100.0 38 ............................. AAAGCAGTTGAAAATGCTAGCTCTGAATATAAATCAGA 234665 29 100.0 34 ............................. GCTGATATGCTATGACATCGCCTAAAATGAGTTC 234728 29 100.0 34 ............................. CCAGATTCAGAAATGACCTGTACTGAATCGTTGA 234791 29 100.0 35 ............................. GTTTTTTGTAATGCCATTTAACTTTCTCTCCTTTC 234855 29 100.0 36 ............................. AATCAAAGTTGATATTGACCCCCAGACCAGACCAGT 234920 29 100.0 36 ............................. ATGCCACTCACATCTTGATTTATATCGCTCGATACT 234985 29 100.0 35 ............................. TACCATGCGTAAGTATTTCCTTCTGTATAGCCGCC 235049 29 100.0 34 ............................. ATAAAAAATGGAAAAGAGGAAAAACAATGACAAC 235112 29 100.0 34 ............................. CAATACCAGAAAAAGCACTAGACATTTTCCTAGT 235175 29 100.0 34 ............................. CTCGCTATCGTATTTGCTACTCTATTGTTCTGTA 235238 29 100.0 35 ............................. ACTTTTCTGGAGTCAGTACAACAGACTCTTCTTTC 235302 29 100.0 34 ............................. TCGCTTTCAACAACATGACCATGCCCACGCTTTT 235365 29 96.6 37 .................C........... ACTGTATTATACAGGAGCTCGTATAGGCGAAATAACG 235431 29 96.6 34 ........................C.... TATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 235494 29 86.2 0 ........C....C..A...........G | T [235520] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.1 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 244152-245222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLW010000002.1 Listeria seeligeri strain FSL W9-0235 NODE_2_length_457543_cov_56.029117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 244152 29 100.0 36 ............................. ACTGTAGTTGTGAATGACCAGTTGCTAAAATCCCGA 244217 29 100.0 38 ............................. ACAAAGAAGTTCCGGGCGACACAAGTATGGGACTGGCT 244284 29 100.0 36 ............................. AAAATTATTGACGCAGGTGTGAAGCTTATATTTGCG 244349 29 100.0 37 ............................. CTAAGTCCTTGCGATTATCCGGTAGCGGAAGTATAAA 244415 29 100.0 36 ............................. ACATATGTTTTTTCATGTTAGAATCCATGAAGCATT 244480 29 100.0 35 ............................. ATCTTCAAAGGTCAAGAAGTTGCCGACATCTCCAA 244544 29 100.0 37 ............................. CATATGATTATCATGAATCAGGATTTAAGAGATGTAA 244610 29 100.0 34 ............................. AAAAATAACCATCTGATCCACTTTAGCGAGCTGA 244673 29 100.0 34 ............................. ACGGGTCTAACACGCCATGACTATTTTTATCATC 244736 29 100.0 35 ............................. CATGGATTTACTATGTGGGATTCTATCTTGTTAAT 244800 29 100.0 36 ............................. TGGAGCGAAAAAGAAGATGAGTTTATCAAAAAATAT 244865 29 100.0 36 ............................. TTGGCTAAACTAATCAATCCGTGGTTCGTATCTCTC 244930 29 100.0 38 ............................. TTGATAGCTCCTACCAAACCCGCTATTTTAGAATAAAC 244997 29 100.0 36 ............................. ATGATAAATCTCCCTCACTGAATCGAGGAAGATTAT 245062 29 100.0 36 ............................. ATATTATCAATTAACGCCATCACAATAGCAATTATC 245127 29 100.0 38 ............................. TAAGAACCGTTGACACCTGTGCTTGAGTAACCTAAACC 245194 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGCATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //