Array 1 482993-484520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKD010000004.1 Cronobacter sakazakii strain Crono13-YL Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 482993 28 100.0 32 ............................ CATTTTCCCCATAAATGCCGCAAACCCCATCT 483053 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 483113 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 483173 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 483233 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 483293 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 483353 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 483413 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 483473 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 483533 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 483593 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 483653 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 483713 28 100.0 32 ............................ TGGCTGAATGCGTAGCTGAACGTTGTTCTCTC 483773 28 100.0 32 ............................ ACGTCAGCAACGGTAATTTCGCTATTTTTAAT 483833 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 483893 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 483953 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 484013 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 484073 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 484133 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 484193 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 484253 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 484313 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 484373 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 484433 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 484493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTGCGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 493230-494698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKD010000004.1 Cronobacter sakazakii strain Crono13-YL Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 493230 28 100.0 32 ............................ GCTCAGGACCAATCAGACCGATTATTAATCCT 493290 28 100.0 32 ............................ GAGCGAAGTCCTGGGCTATATGCCGCGCTCCC 493350 28 100.0 32 ............................ GAGCACGCCCTGGTAGCCCGCGTTCTGCCCGA 493410 28 100.0 33 ............................ TTGTAACAGGGATGGGTGAATATCTCGCGATTA 493471 28 100.0 32 ............................ CATGCCGAGCGGACCGCATTGCGGATCCGCTC 493531 28 100.0 32 ............................ TAACGGGTATTCCATTTTCGCGTCCAGCCACG 493591 28 100.0 32 ............................ ACATCGAAAACGTCAATAATCTCGTCGAGGGT 493651 28 100.0 32 ............................ TCCTGTAGAACCGCACCCGCTGCGGTGTCCTG 493711 28 100.0 32 ............................ CGGTTCGCTCAATAATATTCACTACGAACTCT 493771 28 100.0 32 ............................ AAAAATGACAGACGATCAGCATGCAAAATTTT 493831 28 100.0 32 ............................ AACGCGTCCGAAAAATCTTTCAGCTCGCTTTC 493891 28 100.0 32 ............................ GATCGTTTCCGCCTAGGTAATTTTTTTTAGCT 493951 28 100.0 32 ............................ GCGCGAAGTCCTGGGCTATATGCCACGCTCCC 494011 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 494071 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 494131 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 494191 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 494251 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 494311 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 494371 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 494431 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 494491 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 494551 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 494611 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 494670 27 92.9 0 ........................-..T | T,G [494690,494693] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139010-138554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKD010000007.1 Cronobacter sakazakii strain Crono13-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 139009 29 100.0 32 ............................. TATCAATGCTTACTGATACTTGATGAATTTCC 138948 29 100.0 32 ............................. CTGTCTCTTAGCTTGCGTAATATTACCTGATA 138887 29 100.0 32 ............................. ATACAGCCCCTTTCTTAAGGGGCTTTTTTTTA 138826 29 100.0 32 ............................. CGAGGAACGAACAGCGCGGCTGAGGAGCGGAT 138765 29 100.0 32 ............................. GTCGTGTTTAAACGCGGCGTGGTGCGGCGAGC 138704 29 100.0 32 ............................. CGATTGATGAAGTGGTGATTATCCCAGCAAGC 138643 29 100.0 32 ............................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 138582 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCTTTTTTATCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTATGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166283-165400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKD010000007.1 Cronobacter sakazakii strain Crono13-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166282 29 100.0 32 ............................. ATCGCGCGGCTTGCAACAACTCGATAATTTCA 166221 29 100.0 32 ............................. CGCGGCATAAACGTGACGCAACGGGCAATAAA 166160 29 100.0 32 ............................. GTACGGCAGGAAGGCAGCCTCTTCTGTACTTC 166099 29 96.6 32 ............................A ATTTACAGCTGACGGAGCTGGTGCAGACGCAC 166038 29 100.0 32 ............................. CTCAGTGACGTATTCGCGGATACGCTGGCGAT 165977 29 100.0 32 ............................. AGCTGCTTAACGGTGCCTTTCCGGTTCGTTTC 165916 29 100.0 32 ............................. ATGCAGCGAGTCACGAAGCCTATCACGGACTG 165855 29 100.0 32 ............................. ATGCTGGCTGGCAACCCTGGCAAACGCGCAAT 165794 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 165733 29 93.1 32 .T.........A................. AGCGTACCTGTCCGTAGATATCCGGTTTGGCT 165672 29 93.1 32 .T.........A................. TCTCCTGTACTGTTGTTGGCGTAACACAGTTG 165611 29 93.1 32 .T.........A................. AATAGCCTAATCAACACTTTTGTCCAGATGGG 165550 29 93.1 32 .T.........A................. ATTTTCGAGCAAAGAGGCAACGGGTCTTCATC 165489 29 93.1 32 .T.........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 165428 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.2 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGAGTTGTTGTAAAAATGTTGGTAGGATGTAGACGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCACGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //