Array 1 6799-6438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWCV010000362.1 Methylobacterium ajmalii strain IIF4SW-B5 scaffold443_cov42508_read145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 6798 31 100.0 35 ............................... CCACATCAGCACGGCTGGCCGGGGTGAGGGGGCTG 6732 31 96.8 35 ..........T.................... GTCAGCTCTCGACATGGGATGTCTCCTTGGGTGGG 6666 31 100.0 34 ............................... TTGGGGCGGTGCTTGGCGCTCTCCATGCCGAGGA 6601 31 100.0 34 ............................... ATCACCCAGGAGGTCGAGCATGGCCGGTGATCGT 6536 31 96.8 35 ............A.................. GTCGTATTCCTCCATCACCGGCGCGTCGTGGGTAG 6470 31 80.6 0 ................C.....T.C...TGA | G,C [6441,6444] ========== ====== ====== ====== =============================== =================================== ================== 6 31 95.7 35 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : TCGTCTGGAAGTGAGGCGGCGCCATGCTGATGCTCGTGGCCTACGATGTGAGCACCGAATCCGCCGCGGGACGCCGGCGCCTGCGCCGCGTCGCCCGTGCCTGCCTCGATGACGGCCAGCGGGTGCAGAACTCGGTCTTCGAGTGCGAGGTCGAGCCGGCCCAGTGGACCGCTCTGCGCGCCCGCCTCGTCGCCGAGATCGATCCGGCGCAGGATTCGCTCCGGTTCTACCGGCTGGGCGCCCAGGCCCGCGGCCGGATCGAGCATGTCGGCGCCAAGCCGATCCTCGACCTCGAGGGACCGCTGCTCTTCTGAGCGGCCTGCGCGAACCCCGAGCGGACAGCCCCCGCCCGGAGGATTCGCGCAGCGGTGATCCCGTTGCGGCCACACGCCTTTTCCACCCGCTTCGCCCCTGCCGCAACTCGGGCCGCCCCCCGCCGGGGGAGGTTCGCGCGCAGGCGCGATATTTCGTTTTCAGCGCAAATGGTTACTGTGGTGGCC # Right flank : TGTTGTCCTCCGGGGCGCGGTAGGCGTCGTCCTCCAGGCGCAGGCCGGTCCGGGGATCGTAGAACGCCATGTCGTCGAGGCGCAGCAGGGCGCCTTCGAGCAGGGGGTGGACGGGCCGCAGGCGCCCGAGCGCCAGCCAGCGGGCGCGCAGGGCCGGGGGAACCGGCACGACGTAGGCCTGGAGGCGGCGCAGGTCGTCGCCGAGGGGGCGGTCCATGGCGGCGATCCGCGCGAGCAGCGTCTCCGCCCGGTCGTCGTCGGGGGCGGCGCGCCAGGGCACGATGACCGGCTCCATCGCCTCGTCGATGAGGCGGAACGCCCGGGCAATGCGGGCGAAGGGGAAGGCCTGCGTCGTCGCCCGCTCGGCGAGGGCGGGCAGGATCGGCCAGGTCTCCCCGTCGAGCCGCGGCGCGTCGAGGGCGTGCTCGCCCCGGCGCCAGTAGACCTCCTGGAAATACGCCCGGATGGCGTCCGGGGCGAGCGGGTCGTCCCGCGTCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1437-1102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWCV010000556.1 Methylobacterium ajmalii strain IIF4SW-B5 scaffold660_cov47034_read145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1436 28 100.0 33 ............................ GTCTTCCTCTCGTCTTTCTGCGCCCGAAGGAGG 1375 28 100.0 33 ............................ CTCGTGCTACGCGGCATCACCGCTGTAATCTCC 1314 28 100.0 33 ............................ CGACAACCGCATGAGCGTCGGCCAGAAGCTGCG 1253 28 96.4 33 .........................C.. TCCGCCCGATCCGGAGGAGATCAGGCCATGCCC 1192 27 96.4 33 ............-............... CGCGACCTTCACCAGAATCGACACGCAGCTCGT 1132 28 89.3 0 A............C...........T.. | TA,T [1106,1121] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 33 GGCTCCCCCGCCTACGCGGGGATCGACC # Left flank : CCGCGTCGAGCCCCTGCCACCAGACCGGCCGGCGGCGGGGAAACCCCTTCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCCGCGTAGAGGTCGTCGCGGTGCCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCCCTCGGCGAAGCTGCGGTAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTAAGATCGGTCAGGGCCTTCACGGGCATGCTCCAGTCTGGAATGGATCCAATCTATAGATTGGATCCATTCCAAACAAGCGCTCGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCACGGACTATGACCCTCGACGGCCGGGCCGGTCTCGGGCATCCTGACACACCGCCGGTCGCTTATCTTCCCCAACGGCATCTTTGACGTCGTGAACGGTATCAGTGAGTTAGTTGGCAGA # Right flank : ACCTTGGAATGCGTGCGTTGCCGCACGCCGCTGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCTTCCTTGTCGTCCCGCGGGTGCGGGGCGGCGCGGGGTCTTCTTGCCGCGCACCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAAAGCCTCGGGTTCCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGAGCCTACGACTGGCTCACGCCGCTGCGGCCCTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGCTCGGTCGACGGCGGGGTGAACACCGCGGTCCTGGAGCGGATGGGCGTGCGGGTGATCCGCGGCTCGGGCG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCTACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //