Array 1 284331-283039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083931.1 Alysiella filiformis DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 284330 32 100.0 35 ................................ TGGCAAAGGGTTTGTACAATCCGTATAAGAGTACA 284263 32 100.0 34 ................................ GAAAGACGCTTTTGCCAAAGTGCATAAAATTGAA 284197 32 100.0 36 ................................ AAATCCAGTTTTGAGTGTGTGATGTCTGCCATTGTT 284129 32 100.0 34 ................................ ATAGGTTGGAGTGGGTATTGTTTTGATAGTAAGA 284063 32 100.0 35 ................................ GCACTATCAACATCAACGATGGATAACATTAATGT 283996 32 100.0 33 ................................ TTGGTTTATCGTGGCAAATTGCCCTTGCAAATA 283931 32 100.0 35 ................................ TTTGTCATAATCAATTTGACAGCTCTCAATAAACT 283864 32 100.0 35 ................................ GCACTATCAACATCAACGATGGATAACATTAATGT 283797 32 100.0 34 ................................ ACTTGGTAGCCCATTTTTTGCCTTTCGGTTTAAC 283731 32 100.0 33 ................................ CCTGTGCTGCTGTTAAACCTTCCCCATACAAGT 283666 32 100.0 33 ................................ TTGGTTTATCGTGGCAAATTGCCCTTGCAAATT 283601 32 100.0 34 ................................ GAAAGACGCTTTTGCCAAAGTGCATAAAATTGAT 283535 32 100.0 35 ................................ CTTCAATCTAAATATCGTTTAAAACACGGTCTCTT 283468 32 100.0 34 ................................ CAAAATAGGCTTGAATGGGTGTGTATTCGCCATT 283402 32 100.0 34 ................................ TGTCGTCAAACTGCTTTTGTAGCTCATTGCGTAT 283336 32 100.0 34 ................................ ACTGGGCGATAAAACAAGCGATTGGGTGCGCTTT 283270 32 100.0 35 ................................ TTTTCACAAAAAACACAATCACCGCTAAAATCAAA 283203 32 100.0 34 ................................ AACAGCACAAACACAAACGGTTGTATCAGCAAGT 283137 32 100.0 35 ................................ TTGGTTTATATTCAGATACACCAGTAAAAATATTA 283070 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 100.0 34 GTTTAAACACACGGGTACCCGTGGGTACCCGA # Left flank : ACGATGAACGGTTTGTGTGCAAAACCACTTTCATCAATATAAACCATTTGATAGCCCATTTTTTTGTAAAAACGCAATTTTAAATGGTACTGATTTCGCTGCTCTGGTTCTTGTTTTGGGTGTTGGCTCGTCTTTTTTTAACTGAAATTTTGAGCTGTTTGAGTGCGTAACAAATTGCACTTGCGGTAACACCCAAACGCTTGGCACGTTCGTATTGGAAGGCATCAGGGTAGTTTTCAACATCTTTTAATAATGCTTCATGATTAACTTTTAATGGTTTGAATTGACGTTTTTTTCTTTCAATCCCATTTCGTTTCCATTGGTTAATGGTATGTGTACTGATGCCATAAAATGCGGAGGCTTGACGTATCGTCATACCGCTTGCAACGCTTTTTAGGATTTGTTTACGTAAGTCTTGGGAGTAAGCCATGATAAATTTAATATTGTAGTGATTTTAATTTTGGTTAGCTATAATTCATCTTTAAAAAAATCTTGAAACT # Right flank : AGCCCCTTTGGGAAGCCTTGCTGCATCTGGCTTTGAGAACCTGTTTTCGCTAGCCACCCTAAAAGGCGAAACCAAAGTATAGCATAAATGCACCTATATGCTGTGTGCTAAATTGTGATTTCTTGATTTTTAAGGAACTTTTTTGATTCGCTAAACCCTTGGGTTTTGGCTGTGTACTGCACGTTAGCGATTTATAAAATGAGGGTATCTTGGTAAATGTCTATGGCTTTTTTGGCACCGTGATGTTCTACTTTGCCGCGCCATTTGCTGCCTAAATGGTAAAAACGCAAACTGTCGGTATGGGGATTGTAGGTATTTAACAGTTTGTTTTTTAATACAACCCATTGGTCGGGGACTATATCGCATTCAAACACGGAATATTGTACGCGAACGCCATAGTCTAAACAATGTTCGGCTATATGACGCAGTCGTGTGGCTCCGCCTTCGTCTGCTAGGGATATGTCGTAGGTGATGAGCATGAGCATTTTGTTTCCTTTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACACACGGGTACCCGTGGGTACCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 1076909-1080482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083931.1 Alysiella filiformis DSM 16848 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1076909 28 100.0 31 ............................ CTCGCCCCACCCAAACGCAAAGACTGAATGA 1076968 28 100.0 32 ............................ TGCGTTGTATGCGCCTGCAACCCAATCAAAAT 1077028 28 100.0 32 ............................ TTAGCATAGCGATGCTCACCAAAACCATCAAA 1077088 28 100.0 32 ............................ GTCGCCTGACAATAATTTACCATTACCGAAAG 1077148 28 100.0 32 ............................ TCTTGTTTTTCAAAGGCACTTGCCCAAATTCG 1077208 28 100.0 31 ............................ TGATGATTTGACTTTCTCATTCAATTCATTT 1077267 28 100.0 32 ............................ GATTGAAGAAGGCAGTTACATCGTTATTGACA 1077327 28 100.0 32 ............................ AAACCGTCCAAATACGTTGCGCCCAAACGGGT 1077387 28 100.0 32 ............................ TTTTTGGTCAAAACGTGGGGCTTGGGGGGTAT 1077447 28 100.0 33 ............................ TGCTTGCATGATTTTTTTCCTTTCAGGCAGCCT 1077508 28 100.0 32 ............................ TCCGCCAGCGCATATTTGTCCAATTCAGGATA 1077568 28 100.0 32 ............................ AATTTTTGTGTTTGGGCGATAAGGCGTGCACG 1077628 28 100.0 32 ............................ AAGCCCCGAAGTTCAGGGATTTCTGCGATTAC 1077688 28 100.0 32 ............................ GTGCCGTCCTGTTCGGTAACTGTGTCGGCTAT 1077748 28 100.0 32 ............................ TTTGGCGCAATGCAAAAAGAAGCAGGCGCAGC 1077808 28 100.0 32 ............................ ACCAAATGCGCCAGCCACTTCCAGCAAAGACG 1077868 28 100.0 32 ............................ TGTGGACAAATCCGCAAATTTAACGCGATGAT 1077928 28 100.0 32 ............................ TTTGATTACGGCATCAATGCTCACATCCAGTA 1077988 28 100.0 32 ............................ AGTAACTCATCTGGAATATTTGGCTTAACATA 1078048 28 100.0 32 ............................ TTGAACCAGTTTACGGTTTTCGTAACCATGCT 1078108 28 100.0 32 ............................ ACAGGGAAACACAGTAAATGCCACAAGGCAAT 1078168 28 100.0 32 ............................ ACAGGGAAACACAGTAAATGCCACAAGGCAAT 1078228 28 100.0 32 ............................ AGCTCTCTAAAACTTACTTTCTCATACTCAAT 1078288 28 100.0 32 ............................ TATAAAAATTGAAATAGCAAAATTCAACAATG 1078348 28 100.0 32 ............................ AACGCCTGTTTTTTGATGCTTTCGTGAACTGC 1078408 28 100.0 32 ............................ TGAACGCGAATTATTGGCGCAAGTCCAAGCTG 1078468 28 100.0 32 ............................ GCAGTCTGTGCTGTTGCTTGCACCCATGCTGA 1078528 28 100.0 32 ............................ CATAGTGGTCGGCTGGCACGATTAAAATGGAG 1078588 28 100.0 32 ............................ GTACCACTTGGCATAATGAAACCGCAGTACAT 1078648 28 100.0 32 ............................ GTTTATGTTTTTCAGCAGTACACGCTCGGAAC 1078708 28 100.0 32 ............................ ATTTCATCATAGCGAATGGCATAGTTGTTTGC 1078768 28 96.4 33 .C.......................... AAAGCTATCACGCATTTGACCGCCCTGCTGGAT 1078829 28 100.0 32 ............................ ATAACATCACACCATTTTCTTCTGTTAGAACA 1078889 28 100.0 32 ............................ TTGTACAGGTAAGTCATCTCTTCATATTTGAT 1078949 28 100.0 33 ............................ CGATAGCCATGCTTTGCGTGATGATTTGTTGTT 1079010 28 100.0 32 ............................ ATGGTTTCATAATCTGTATTGCTACTAATCAG 1079070 28 100.0 32 ............................ ACAAATGTTACAAGCTGTGCGTGATGAAATCA 1079130 28 100.0 32 ............................ AAAAATGTCATAATAAACAAGCCAACTACCCA 1079190 28 100.0 32 ............................ TTACCACTCAATCCGCCCAGTTGCCCATTATC 1079250 28 100.0 32 ............................ AACTTGGGTCTTGTGATGTTCAGGACGCAATC 1079310 28 100.0 32 ............................ CTATATCGCCATTTTAAACTTACTTTTAAGGC 1079370 28 100.0 32 ............................ AATTAAAGCAACAGAGCGAGCCAATTCGGTTT 1079430 28 100.0 32 ............................ TTACCAAGTTGGGGATTGCGAGCCAACCATAC 1079490 28 100.0 34 ............................ GCCCGACCACCATTGTTAATGATGGGGATATAAT 1079552 28 100.0 32 ............................ AATCCTGTTTTTTTAAGGCGTTGTGCATGGTC 1079612 28 100.0 32 ............................ TTCCGATTGGTGCTTTTTCGTGAAAGCAATCA 1079672 28 100.0 32 ............................ ACCATGATGTTGATTAACGTGCCGTGATTGAT 1079732 28 100.0 32 ............................ AATTTGACCGAATCGGGCGAATGCGCTGCACC 1079792 28 100.0 32 ............................ GTCTGGATTATAATCCAACAAACGACCGCTAA 1079852 28 100.0 32 ............................ GATGTAATCGTGTAGCGCGGCTCCCATTTTGC 1079912 28 100.0 32 ............................ TATTCAGCCCAATATGTTACAATCTTTGCAAC 1079972 28 100.0 32 ............................ GTATTGGATTCACGATAAAGCTGAACTGTTGC 1080032 28 100.0 32 ............................ TATTTCATTTTCATGTTTCCGTTGCATTTGTT 1080092 28 100.0 33 ............................ TATGCGATTGCAAATGAGTTGCTTATCCTATCC 1080153 28 100.0 33 ............................ AATACTGGCTCAGTCTGGATAGGGATGCTTGCA 1080214 28 100.0 32 ............................ AGTTCATCTTTGAAAAATGCCTGAAATTGCAC 1080274 28 96.4 32 ...........................T TCAAATTTGTGTTTCAGGTAGCCTTGCAATTT 1080334 28 100.0 32 ............................ TTCGGTTGGTTGCTTTGCTTGATAGCCCACCC 1080394 28 100.0 32 ............................ TCACAATCATCAAATGTAATGTTTTCTGCTGG 1080454 28 96.4 0 ........................A... | C [1080480] ========== ====== ====== ====== ============================ ================================== ================== 60 28 99.8 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : ACAGCCAAGCGATTACCTTGAAATTGAAACAAAATTTGCCCATTAGCGAGATTGAGCAAATCATCGCCAGCGCCAATGCGTGGACAAAAGTCGTGCCGAACACCAAAGAAGCCAGCATTCACGAATTGACCCCTGCTGCGGTTACGGGCACTTTGACCACACCAGTGGGTCGCATTCGCAAATTGGCGATGGGCGATGAGTTCATCAGCGCGTTTACGGTGGGCGACCAGTTGCTGTGGGGCGCGGCAGAGCCGTTGCGCCGTGTGTTGCGGATTATTTTGGGCAATTTGGATTGATTTTATTGATTTGAAATTGAGCCAAAAATGGGTTCAGGCAGCCTGAAACGTGATTTTGGGATATGGCGAGACCCAATGTTTGAGTGCAATTTTAAAAATCCAATAAAATCAAAATATTAAAAACAATGGCAAAAACATGGGTTTTGCCAGCCCAAAGTAAAGCCAAGGCTTGATAACTGGGGCATTGCTGCTTATAATGCCCTA # Right flank : AATGAAAAAGGGGCGGATGGGAAATCCGCCGCCTCTACATCGGTTTATCAAGTGGGTTTTACAAAGGTTTCAGGCTGCCTGAAATCATTTCTCTTCTTGCTGTTGCGCCAAATATTCGCCGCCCCAACGCACATAATTGGACGATGAATACAGCAAATGTTCACGTTCCGCATCGGTTAAGGGGCGCACTTTTTGCACAGGCGCACCCATATACATGTAGCCGCTTTCCAAACGTTTGCGTGGCGGCACAAGGCTGCCTGCACCAATAATCACATCGTCTTCCACCACCACATCGTCCAAAATGGTCGCGCCCATGCCCACCAACACGCGATTGCCAATCGTGCAACCGTGCAACATCACATGATGCCCCACCGTAACGTCATCGCCAATGATGGTGGGCGAACCTTCTGGCTTTTTCGCACTTTTGTGGGTAACGTGAATCATGCTCATGTCTTGAATGCTGGTGCGTTTGCCAATTTGAATGCGATTCACATCGCCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 1284635-1287974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083931.1 Alysiella filiformis DSM 16848 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1284635 28 100.0 32 ............................ GCCATTGCTGAAAAAGATGGCAAAGTATTAAC 1284695 28 100.0 32 ............................ TATTTTGTGGATTATGAAACCGCCATTGCTGA 1284755 28 100.0 32 ............................ GACAAGAAGCCATTGCTTTACACATCAAACAA 1284815 28 100.0 32 ............................ AAAAGACGCGAATATTCAAAGGTTTAACCAAT 1284875 28 100.0 32 ............................ ACATCAAGAAAATCAAAACCAACAAAGCCACT 1284935 28 100.0 32 ............................ AACTCCCCCAAAGAATTTGGCGTAGGCACGAT 1284995 28 100.0 32 ............................ GTTGCAAAAATTTGAACCAATTTCAGGCTGCC 1285055 28 100.0 32 ............................ GCATCAAAGTCACTTGCGGCTTTTGCGTTGCC 1285115 28 100.0 32 ............................ TGAAACCATTGCGCCTGAAAATGTTAAAGGGC 1285175 28 100.0 32 ............................ ATATTGAAAAACCTTTTAAATGTATTGTTTAG 1285235 28 100.0 32 ............................ TTTCTTTATCATATTCGGAACAAATAAAGCCA 1285295 28 100.0 32 ............................ CACAGGCGGACGGCTATTTAGACGGTTTGGAA 1285355 28 100.0 32 ............................ TAATTCGCCAAGTTCACAACTCGTTGCATATC 1285415 28 100.0 32 ............................ TTGAAACGCTGCCTGAAGGCATCACAGATAAA 1285475 28 100.0 32 ............................ TGAATTGTAAATTCGCCATAAAACATTGAGAT 1285535 28 100.0 33 ............................ ATTTAATCGCACCAAAAACGTGCCAGCGCGGAC 1285596 28 100.0 32 ............................ TAAATCAACAACAGGAGACCAAATGGAAACTG 1285656 28 100.0 32 ............................ GTCTGTAAACAAGTAGCTTGGGACGTGTGCCA 1285716 28 100.0 32 ............................ GTATGGGATTAACTCTTCGGGTGTCGGGAATA 1285776 28 100.0 33 ............................ TAATTCACAAGCTCGCCAAATGGTTTTTTTGTC 1285837 28 100.0 32 ............................ ATCTTGTTGCTCCGCCTTAATGCTGATGCGGA 1285897 28 100.0 32 ............................ CCTTGTTCAGATGACACCGCCAACTCAAAATC 1285957 28 100.0 32 ............................ ATTGCCGATAATGATTATGCGGGGGCGCAAAT 1286017 28 100.0 32 ............................ TAATCTGCACTTCGCCAAATCCCAACCGCCGT 1286077 28 100.0 32 ............................ GTCAATCAGCATTCCGCCATACGACATAAACG 1286137 28 100.0 32 ............................ GAATTGAGCCGTCCGCGCGTGGCGTATGACAA 1286197 28 100.0 32 ............................ TGAAAAACTGGGAGAACGGCACGACTGGTGCA 1286257 28 100.0 33 ............................ TGAAATCGGCGATATTGGCTTATGTGCCTTTGC 1286318 28 100.0 32 ............................ AATCGGAAGCTGAATTGATTGAATTAAATAAA 1286378 28 100.0 32 ............................ GTTGCCACAAAATCCGCCAAGCTGCTGCCCAT 1286438 28 100.0 33 ............................ GAATTTACCAACACGGCGGTGGCGGTCATAGAT 1286499 28 100.0 32 ............................ AACGATGTGGGCAACACGGGCGTGGGCAAAAA 1286559 28 100.0 32 ............................ AAATTGGGGCGATGTGAAGGGTGCGAAAGTCC 1286619 28 100.0 32 ............................ TGAAAAGCTGCCCGATGTTTATTTCATTTTTT 1286679 28 100.0 33 ............................ TGTAATTCAATCTTTGCCAATGGCGTACTCAAT 1286740 28 100.0 33 ............................ ATTTCGGGGCGCAGTTTGACCGCCAAACTGGGC 1286801 28 100.0 32 ............................ TTTCAGGCAGCCTAGCCGCCTTTGCGTTGTTA 1286861 28 100.0 32 ............................ TTAACGAAACTGTTATCAGCAAATACAATATC 1286921 28 100.0 33 ............................ ATGACAGCACCGTTGTTTGCTTTACGTAATTCC 1286982 28 100.0 33 ............................ TTGACGAGTGATGCGCAAAACGAAGCCTTGACC 1287043 28 100.0 32 ............................ AGCGCAAGAACAAATTGCGCCAAATGTGGTAT 1287103 28 100.0 32 ............................ TTCGCCGTATACTGCGGCGTAAACAAAAGCAA 1287163 28 100.0 32 ............................ GTCAGAAATTTGCTCGCCCACAACCATGTACC 1287223 28 100.0 32 ............................ TGAAAACCAGCGTCTTTGAAATCTTCCAAAGA 1287283 28 100.0 33 ............................ CCAAAAAAAAACGCCCAAACAGCCGCCAACATC 1287344 28 100.0 33 ............................ ACTTCGGGCGCAAGCACCGAAACCGTATCACAT 1287405 28 100.0 32 ............................ AATATCAGCAAAGCGGCGGTCAATCCGTACTA 1287465 28 100.0 32 ............................ GAAAGCGTCAGCACGTTTTGAAATTCGCGCCC 1287525 28 100.0 33 ............................ CGAACAACTTTATCAATTCCGCTTTGATAAATT 1287586 28 100.0 32 ............................ ATAACCGTACCTGCCGATTTTGCCCCAGTTGT 1287646 28 100.0 32 ............................ GCGATTTGGTTGATAAAATTTTCAACGGTATC 1287706 28 100.0 32 ............................ TTTTTCGCCCCATTTGTACCGCCTGTACGCCT 1287766 28 100.0 33 ............................ CAATGAAGTGGTTTTAACATATTCAGACCGCAA 1287827 28 100.0 32 ............................ ATTGAGAACGCACAATCAAGATTGGGTTATGT 1287887 28 100.0 32 ............................ GTTAAAGTAATCTCGCTATTACTCATTTACTG 1287947 28 89.3 0 ....................T.C.A... | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.8 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : AAAAAGGGGCGTGCCACCGCCCCCACAAAATCCCACCATCACGCCTGCACTTGCCAGAAGTCGCATTGCCGCTTGGGTAATGGAAGTACCTGTACCAAGCAAAATACAAGTGGTATTGGCAATGGGAATATTGTAATAAAGATTTTCGTTTTTGCCTTCGGTTAAATACAAAACCCGACCGTCTTTTTGCATCACTCGGCAATGCTCCAAATAAAACAGATTGGCTCGTTTGGAATGCAAAATGGCTTTGAGTTCGGTGGGTTTGAGGGTATTCATCGTGAAAACCAAAAAATGTTAAAGATTGTTAAATTTAATCATGGGTAATGATGGCTGTCAAGGCAGTAAATGGAAAAATGAGTGATGTTGAACCCTTTATTTTGAGATAAAATTAAATTTATTTAAAATCAATTAGTTAAGAATAGGCGGAAAAACATTGGTTCACAACACCAAAATGCCGTGAAACACTTGATATGGCTGTATTGAGCCATTATAATTGCCTA # Right flank : AATTCAGTCTGAAATTTTTGCAAAACTCGGCTTGTGGGGTCAGATTTCATCTCTGCCTTGTTTGGGGTTGCTGGCATTTTCATTTTTATCAATCAATGAAAGAAGGGGCGGATATGAAATCTGCCCCTATGTCAGTTATGAAAGTGGGTTTTGCAAAGGTTTCAGGCTGCCTTAAACGTGTTTGATGCGTTTTTAGGCAGCCTGAATGTGTTTTATCTCATTGGTTTATTGCTTTTTTGCGCGTTCCGCCATCATTTGGTGCAAGGTTTTTTCGGCTGGTTTCATGGGTGTGCGGAATTTTGTCCAATCCAACTGCCAAGCTGGTGTCAAACCCCTAAATGTGGTCGCCGCCCAACCAAAGGCACGATACGCTTTTTTCCCCGAAAAAATCCCATCAAACACACGCCACGCCAATTCTTCGCCAAATGAATGAGACGCGCCTTGCCCTTTAATGGGGTGCGACACGGTTTCATCGGGGCTGCGTTGGGCTTCCACACGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 1335957-1335657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083931.1 Alysiella filiformis DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =========================================== ================== 1335956 27 100.0 36 ........................... GAAACCAATGCCATCAGCAGTCAAGTTGAAGTAAGT 1335893 27 100.0 43 ........................... GCCATAGCAGGGGTGAATGTGCGGAACGTAGAACGTCGGAATA 1335823 27 100.0 43 ........................... TGTGTGAATTTGGTACGTAATTCTTTTGTGGATTGTCGGAATA 1335753 27 100.0 43 ........................... CGTCATCTTTTGTAATCATACTTAACATTTTTGTGTCGGAATA 1335683 27 88.9 0 .....................A..AT. | ========== ====== ====== ====== =========================== =========================================== ================== 5 27 97.8 42 ATTGCCCCATTCATCGGGGATTAAGAC # Left flank : GATGATTGCGATTTTAACGGGTGTGGATTGGGGTTGGTGGCTGCACCTTGTGGTTTGGCTGGCGTGGTTTTTCACATTGGGCAAAAAACACATGGATTTTGTGGACAATGCCATAGGCAATGATTACAACCGCCAATCGTGGCAAAAAACCCTGATTTGGGTGGCGGTGGCTTTGGTGGCGTATGTGTTGTTGATTATGTTGTTGATGTATTTGGCGATTCAATTAGATTGGGCGCACCCAAGTTGGTTTGCATAAAGGCGATTCAGGCAGCCAGATTGGGCAAATGAGCGCAAGGCTGCCTGCAAAAACTTGCCAAATGATGTAAAGAAGTGTAATATCCGCACTTCAATTATTCCGACTGAAAAGTTGGATTCCGATTGCATTTGGTGTTAAGAATTTGTTAAAAAGTATATTCGTTTGTGAAGATTTTTGGCTTAAAAATTTTGGCTTGCAATGTATTGATTTTACGAAAGAAAAACACAAGGGTGCGGTCGGAATA # Right flank : AAAAAAAGCAGCCTGAAAACATCAACAATGCGTTTTCAGGCTGCTTTTGCCATGTTTACAATGGCAGCAAAAAACCAAATACCAACCCAGTAACCGCGCCACACAATCCATTTGCTGAATATTCAATGCGTTTTGGTGTGTGGCTGTCTGAAACCTTTGCAAAACGCGGTTTGTAGGGGCAGATTTCATATCTGTCCCGTTTAGGTTCGCAGAAATTTTCATTCTTATCAATAAATTGAAAAAAGGGCGGATATGAAATCCGCCCCTACGTCAGTTTAAAAGTAGGTTTTGCAAAGGTTTCTGTCTATGTTGTGGGGTGCTGCAAAGCCACTTGAAATGCGCTTTACCGTGAAATCAAGCAAAAGCGTGTAAATCCCCCTGCCAGCACCCTTGAAAAATGGCTATGATGTGCGCCGTTTTGCCATTTTTGTGTGGCGAGCAATCTTTTTTCAATCTATTTTTGAAAGTTTGAAACATCATGAAAAAGTATTTTGCCGAAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCATTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1974648-1974822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083931.1 Alysiella filiformis DSM 16848 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1974648 35 100.0 37 ................................... CATTACTTTTCTGAGGATGTTTAATGCACCATTTAAA 1974720 35 97.1 33 ......G............................ CTCAGAGTTATACTCTTTTACGACATTATCTTC 1974788 35 94.3 0 ..............................A..A. | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 97.1 36 GTCAGAATGATTGCCCCATTCATCGGGGATTAAGA # Left flank : CATGCGGCGCGTGTCCACCATTGCCCAGCTTTATTTTAACGCGCCCTTGCAAGCCGACTATGCCGCATTGAGCGCACAAGCCGCCACCCTGCGCGGCGAACACACATGGCATTGGCACGATTGGCAACGCTATTCCAACCGCCAACAGCAAATGATGAAATTGGGCGGCATTATGGGCGAAAGCGTGTGGCGCGATGTACCCCGCGAATGGGCGGCATTGTTGCACATAGGGCAATGGCTGCACATTGGCAAAGAAACCGTGTTTGGATTGGGTGGCTACCGCGTTCAGGCTGCTTGAAAAAATAGGGCTTGTCAATTTGAGTAAATTTGCGTAAAATGCGCGACACAATCATTCTGACAAAGGCTGATGTGATTTGTCTCGTTCTGGTTGTTTTCTCTGTTCAATTTTGTTAAAAAGTATATTCGTTTGTGAAGATTTTTGGCATAAAAAATTCAGCTTATAAGTATATGATTTTACAAGGTGAAAATAAGAGAGTGCA # Right flank : AAACCAAGTCAGGCAGTCTGAAAACAAAACACCGTTTTCAGGCTGCCTGATTTTTTGCCCCCATTTTGATGCACACAAATTTGTTTTGCTCACGCAATGGTCGCGTTTTGGCGTATGATTTCATTTTCAAATTTCAAACAAGGGAATGGCAAATATGGCAACTTTATTTGTGTCGCGCCACGCTGGGGCGATTGAATGGATAGCGCAGCAAGCCCATTGGCACATTGACGAAATCGTGCCACATTTGGATTTGGCACAAGTGAATGCGGGCGATGTGGTGGTCGGTACGCTGCCTGTGCATTTGGCGGCGGCGGTGTGTGAAAAAGGGGCGCAGTTTTACTTTTTGCAAATGCCCCAACAGTTTGCCACGCGCGGCTCGGAATACAGCGCAGCAGAAATGACGGCTGCTGGCGCAAGTTTGGTGCGTTTTGATGTGAAAAGGATTGCAGAATGAAACAGAAAATTTTGGTTGCTGTAACAGGCATGACACCGCAAATTGT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTGCCCCATTCATCGGGGATTAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //