Array 1 5416-6908 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETJ01000003.1 Salmonella enterica isolate STY120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5416 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5477 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5538 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5599 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5660 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5721 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5782 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5843 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5904 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5965 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6026 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6087 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6148 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6209 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6270 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6331 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6393 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6454 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6515 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6576 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6637 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6698 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6759 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6820 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6881 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23040-25004 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETJ01000003.1 Salmonella enterica isolate STY120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23040 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23101 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23162 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23223 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23284 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23345 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23406 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23468 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23529 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23590 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23651 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23712 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23773 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23834 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23895 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23956 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24017 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24078 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24139 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24200 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24261 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24323 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24426 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24487 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24609 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24670 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24731 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24975 29 96.6 0 A............................ | A [25001] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //