Array 1 1460-1089 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000116.1 Paenibacillus durus ATCC 35681 S1_contig00343, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1459 32 100.0 36 ................................ TTTTGGAGTGGTATTCGTACAAAATATTTGCCGTAC 1391 32 100.0 35 ................................ ATGTAAAGATCCGACATTATTTAGCCTCCTTTGCT 1324 32 100.0 37 ................................ TTGGATCAGTATAGCCGGACCGCCGGAGCGATTGGTA 1255 32 100.0 36 ................................ AACGATGTAATCATCTAAGTGTTCGGGGGCATCAAT 1187 32 93.8 35 ......................A........A TTCGCTTGGCAGCTTACGGGTGGATACCGAATGTG 1120 31 75.0 0 .......G..-..GT....TA..A.......A | C [1115] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 94.8 36 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : ATGAACGGGCAATTGCTGCCCCGGTCCAAAGTTCAAGACAAAAACTGTATGCTTGTCTTCTTTAAAGACAATGCGCTTGGTGAATCGGTCCGTTTGATATTCTTGAAATTGAACTAGCTCTTTCTTTTCCATTTGAAAATCACTCTCCTTGTTTTGAATTAATCAGGCCCTACAGCCGGATTTCGTATTCGCAGAACTAATTAGATTGTATAAGAATCAGACAGATGGCTAGTGATTTCAATCACATTATTTTCAATCGAATCGTGAAAGGCTTGTCTTGTTGCTGCTTTTTCCTGCTTATGATCACCCGTTCCAAGTGGCTGAGCCTTCTCAGGTGCGAACCCCAAGCGCACATAAAAACCCTGGGAGGTTCGCACCTCTTGCGGGGCAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCCCCCTTTAAACGGTCATTTTAAGGGGTTCGCACTAAAGCGTTTGCATTCCCTTGCGCAGCAAGGGGTTACACTGATGCT # Right flank : TGGCATTTGAACTATCACTAAGCGAAATGAAGGGGATCTTAATCAGAAAGAGGGACAAATGACTTTGAAAGCCAATAACACTATCTATCGGTTAGAAACCTGTTAAGGCTGATGCCGTCTTTTAGACCTTGCTTATACATCAATGTTTCTGCAATTCCTTGAAGTAGGGCAGTGCTCGTATCATAATTTTGCAGCATTTCTTTGTATTCTTGGGGAAGATCGGTCATTAGAGTTAAGAACAACTGATTGCATTCTTCAATCAATTGCCTGTATTCATTACAGTTAGACAAAATCGAGTTAGCTATATACTCCATACGAGCGGAAAGAAACTGGTTAAAAGCTTGCTCCATGTATGCCATGAATGTCCTCCGACAAAATAATATCAAGGGTTGTATAAAATAAATTATATAGTGACATCACTTAGATGTCAACATGAATGTATGAGCGGAAATTTCATAATGATACAATAATGACATCACTTTTGGGGAGTATTAAACATA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1246-1479 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000259.1 Paenibacillus durus ATCC 35681 S1_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1246 32 96.9 36 ..........A..................... TCACTCTTCGGGATGTAGCCAGAGAGGAAGGATTGA 1314 32 96.9 35 .............T.................. CTTTAGGTGTTCCGGTGTTCCTGTGGCTACTTTGG 1381 32 96.9 35 ...................T............ CGCAAAGGTCACGATTTTCGCTGGCGAAGCCATCG 1448 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 97.7 36 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : TTGTCTTAAGAGCAAGCCCGCTGACGATCAGTTGGACAGCCTGGCCGTATGTCATTTTGGACTTGGGAGCAAAAAGCTGACTCGTCACTCCGTTAATCACCCCAGCTTCATGCAGTGCGTTGATCTTGGCCTCAGCCGGATCTCCCTTCAGGTCGGAAAAAGCGAAAGCCGACGCTCCGAATAATACCGCCCCCGCCAAAATCCCGCATGCTATGGTCATTTTTTTGGCATTGTGCCTAAATGTCTGTCTCTTCATCATTATTCACCTCTTATCTTCATAGATGCCCAATACGGCGAAAAGGTTGCAAGGAGGTGAAAGATTGTCCGGTTAAGTGCGAACCCTAAGCGCACATGAAAATCCCGAGAGGTTCGCACCCCTTGCGGGACAAGGGATTTCGCGGTATTTTGTATATATTGGGCCGCTTTATTTTCCCCCTTTACAGAGGTTCGCACTTTTTGGGGCTGAAACCCTTGTGGAGTAAAGGATTTTTAGGGTGCCT # Right flank : TTCGACAGGTATGGCTGCAATGTGTAAAAAATCATGGTACGTATTCAACGTATCCAGATTAATTAGCGGAAAGGTTTCACTCTCCGTACAGGAGACAAAGTTTCCTCTCAGTTATAAAATATATCCTACCTTGGGGCTTAAGTCTTTCACAGAGACAAGAGAGATCTGAAAACTTAATATGTAAAGCACCGAGAGCTTCGCTTTTACAGCAGAGTTTTGTGCTTTTTTAGCCTACTAAAGGAGACCTTACTCTTTTAGTCTGGTGCGAACCCCAAGCTCCCATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATATTAGGATCCCCATTTTAAACGGTCATTTTTAAGAGGTTCGCACTAAAGCGTTTGCAATCTCTTGTGTAGCAAGTGATCGTAGCGAGTGCGGTCGCTCCCTATACGGGAGCGTGGATTGAAATCATCTATCTCACCGCCTGTATTCTGAATGATGGAGTCG # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1909-2953 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000259.1 Paenibacillus durus ATCC 35681 S1_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1909 32 100.0 34 ................................ CATCTATCTCACCGCCTGTATTCTGAATGATGGA 1975 32 100.0 35 ................................ CGCGAGATACCGCTCGCTCCCACCGTTTTCCAGAA 2042 32 100.0 36 ................................ GAAGCATCCATGTGGATTACTTGGGCGACGTAGACA 2110 32 100.0 34 ................................ TGTCTGTAGCGCGTTGTCCACGGCGATAGATCCG 2176 32 100.0 35 ................................ TGAGCATATAAATGGACTCTGCCGGGAGTAGACAT 2243 32 100.0 34 ................................ AATTAAGGAGCAAATACATATGAAAACTAAAACA 2309 32 100.0 36 ................................ CGCGATCCATGTTACTTGCACGCCACCATACACACC 2377 32 100.0 35 ................................ CGGAACAACCCCATCTGGCGGTATGATTCCGCAGG 2444 32 100.0 36 ................................ CCCTCGGCACAGTAATTTTTTATTGTTCCAGGTGTC 2512 32 100.0 35 ................................ TGGAAAACCATGACATAATTATTGTCCTCCTTTGT 2579 32 93.8 37 .........C..G................... GATAAGGAAACAAGTGACACGTTCACGAAAGCCATGC 2648 32 93.8 36 .........C..G................... CGCCGCCTCACTGTTACGTGCGGCGAGTGCTTCCTG 2716 32 93.8 37 .........C..G................... TCCGGAGCCACATCGCCGATAATCCGCAGCTCCGGCG 2785 32 90.6 38 .........C.AG................... CACTGCTCCCCCATGAGGCGCACCTGGTTGGCCCAACT 2855 32 93.8 35 .........C..G................... GGTTTCGTGGTAGTAAGTTTAGATGGTTATAAAAA 2922 32 68.8 0 ......TT.CG.G..A..A.TC.........C | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 95.9 36 GTCGCTCCCTATACGGGAGCGTGGATTGAAAT # Left flank : AAATCGCAAAGGTCACGATTTTCGCTGGCGAAGCCATCGGTCGCTCCCCGTGCGGGAGCGTGGATTGAAATTCGACAGGTATGGCTGCAATGTGTAAAAAATCATGGTACGTATTCAACGTATCCAGATTAATTAGCGGAAAGGTTTCACTCTCCGTACAGGAGACAAAGTTTCCTCTCAGTTATAAAATATATCCTACCTTGGGGCTTAAGTCTTTCACAGAGACAAGAGAGATCTGAAAACTTAATATGTAAAGCACCGAGAGCTTCGCTTTTACAGCAGAGTTTTGTGCTTTTTTAGCCTACTAAAGGAGACCTTACTCTTTTAGTCTGGTGCGAACCCCAAGCTCCCATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATATTAGGATCCCCATTTTAAACGGTCATTTTTAAGAGGTTCGCACTAAAGCGTTTGCAATCTCTTGTGTAGCAAGTGATCGTAGCGAGTGCG # Right flank : CAATACCGCCTGGGCTTTATGGCTTTTTTGTTATTCATTGCTTGCTTTGCCGGAGTAGGGATTCAAATCGGACTTACCAGAAGCAGTGGAATGGTCATACTGCTCCCTTTGGTCAGTACGATCCTCCAATAAGATTTTCTACTAAATGCTTTACTCCAGTGCCTACTGGAGTATTTTTTTTGTTGAATTTTTACATAAAAAGAGGAATTAGGCCTAGTTCTGGAGAAGTATATCTGTGAATTTTAGGGTGATATTGGATATTTTGTTGAAACAAGGAGGATAGCATGGTAAGGGCTAAAGTTCTTGAATCAAGTAAGATTTGAGCAGTGGGTTCAGGCATCTGGAACAGAATTAATAACATATACAGGGAACATTGAGTGATATTGAAGATTTTTATAAAGGAATCGGCTCTTATTCACTTGAATTTCATGTACATTTCCAAAAGTGGTAAGGAGGAACTATGGAATATATTGCCCATATCCGCCAAAAGGATAAAAAAA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 12170-14068 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000259.1 Paenibacillus durus ATCC 35681 S1_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 12170 31 100.0 35 ............................... ATCCTCGACTTGTTGGTTTTTTACATTTTTTTGAG 12236 31 100.0 37 ............................... AAGGAAGAGTTGGAACTCCGGGCAAGGGCGCTGGCTG 12304 31 100.0 35 ............................... CATTTCTGCTTTTGCCGCTTCGCGTACCAGCCTGG 12370 31 100.0 35 ............................... ACTAGATAAAGCGGATAGGAACGGATCAGCTCAAG 12436 31 100.0 33 ............................... CTGCTGGTACTTCTTGACGCCTTCCGGGTATTG 12500 31 100.0 34 ............................... TATTACAATGACATCCTTGTAAATGTTATTTTCG 12565 31 100.0 35 ............................... TGTAGTAGTCGGCAGGTTGCAGAGGAATTCGAAAG 12631 31 100.0 34 ............................... ATGCCTGACCGCTTCCCGATAGCGTAGATTATAG 12696 31 100.0 35 ............................... ATATCCTCCTTTTGCTTGTGATAAGGTTTTCTTTG 12762 31 100.0 36 ............................... CCGATAGCGTAGATTATATAAATCAAGAGCGCGTCG 12829 31 100.0 35 ............................... CAGCATCGATGTTCGCCCGTGCTCTCTGGAGTGCG 12895 31 100.0 34 ............................... TCATTATTACTGTACGCTGGTCATCACTAAGCAG 12960 31 100.0 36 ............................... TGCGTCTGTGAGGATGGATAAGGATTCGGCGTTGTG 13027 31 100.0 34 ............................... GCGGAAAGTATCCTCCACCGGACTTTACGATTAG 13092 31 100.0 38 ............................... CCGTATGAGACGATATGATCTGGCGTGATCGTTCCTCG 13161 31 100.0 38 ............................... CTCGATGTTATAGGACTTTCCGGGAAATTCCGGGAATG 13230 31 100.0 36 ............................... TAGACGATCAGGAGTGGGAGCTGATATTCCGGGCGG 13297 31 100.0 34 ............................... TTTAATCTCGCTCTACCTTATGTAGACAAGCGAG 13362 31 100.0 38 ............................... CACACTCGGCAGTCCCGAGTATCTAAGGAAATGTCTAG 13431 31 100.0 36 ............................... CAAAATGTCTTGCACAGAAACGCCCAAGTACCCACG 13498 31 100.0 37 ............................... ATTCAAAACACTCAGCGGATCGCCGTCTGAGGTGTAG 13566 31 100.0 38 ............................... GTTGAAGATGTACGCCAGCAGAGCCGCTTCGCCATTGG 13635 31 100.0 35 ............................... GCCCGGCGTCAAGCCTCTGCGCGCTGGACAACTTG 13701 31 100.0 35 ............................... TCCCTGAACCGATGAAGGGTTATATACCGGCTGAG 13767 31 96.8 35 ............T.................. AGTACCGGGATGAAATATAAACTGTCCCGGCTGAG 13833 31 96.8 38 ............T.................. CCCGTAATGATCGACAATGTAGGACAGCAATTGTACGG 13902 31 96.8 38 ............T.................. CAGAGCCGCCGACAAAGGAGGAAATAAAAGATGATACG 13971 31 96.8 36 ....T.......................... TTATACTGTACCAGATCAACCAAACACTCAAACACG 14038 31 96.8 0 ............T.................. | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.4 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Left flank : ATTTTTGTGGAAGTAGGTGTTTTCAGGTGCTGGTCTTGATTACGTATGATGTAAGTACAAAAAGCGCGGAGGGCAGAAGACGTCTGTCACAAGTCGCCAAGAAGTGTCTGGATTACGGTCAGAGGGTCCAAAACTCCGTATTCGAATGTATTGTGGATACGACGCAGTTCCGCCGGCTAAAGTTTGAACTGGAAGAACTGATCGACGAAGAGACAGATAGTCTGCGTTTCTATAACTTGGGAGACAAGTATAAAACCAAAGTCGAACACATCGGTGTAAAAAGCTCATATGACATGGAAAGCCCGCTGATCATTTAAGGTGCGAATGCCAAGCTCCCATGATTTCCCCGGGTCCTTCGCACCTCAAATTTTGTCGAAAAGTAGAAGAATAACGGTTTATTGAAAAAAGTCAATTCTGGATTTATACTTCTTTTGCAACGTTTTTGGCGGAAATTGAAGGAATTGATGTCTTTCTCAGATCAATCTTAATCATTTTCGCCG # Right flank : TTCGTAAAACCTAGCCGTATTATGCTCTTACTGAGTACCACCCCCGCACGGGTGCACAAATCGTAACTAATAACCAAACCTTATAACAAGATGACGCCCCCTTTTTTTATAAACGCAAACTGAAATTCATTTTCTATACGTTAATGTATAAAAACAAACCGACTCACTACCACGGCATGGAAGCAAAAAGTAAGCGTTCACAACTTTGTAACGAGGCTTGAAGATTTTTGATGGAATTTGGATAATAATGATTGTTTTTTGCTCGATTTATGTTACTATATGGTCAGTTGGAGGAATGAAGATGCTGACTGAAGAACGCCACGGAATGATAATACAGCGCTTACAAGAAAAGGGCGTCGTCAAAATGCAGGAGCTGACGGAAATGCTCGGGGCTTCGGAATCGACGGTACGACGGGATTTAATTGATCTTGAGAGCCGTAATTTGCTGAAAAGGGTACATGGCGGAGCTTCGCTGCTGCCTCATAAAAGCCAGGAGCTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 151-1520 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000189.1 Paenibacillus durus ATCC 35681 S1_contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 151 32 100.0 33 ................................ CTCCCACAGAACCGGAGCCGGAGCGTAAAGGGA 216 32 100.0 36 ................................ CTTGGGCGTCGTCGATGCTTCGCCACTCTCGTACCG 284 32 100.0 36 ................................ TTCACGGTTGAAGGCGATACTTCAAACTGTCTTGCC 352 32 100.0 34 ................................ GGGTTAGCGGTTGGCGGATCGGAGTTTACGGATG 418 32 100.0 35 ................................ ATCTTTGCCAAGTTATTTATCAGATCGCGAACAGC 485 32 100.0 35 ................................ TTGGAGCCAGTACACACCAGCCTCTGCTGCTCCTT 552 32 100.0 35 ................................ AACTGCACCGTTCCCGGCGATCCCGCCACAGCCAC 619 32 100.0 34 ................................ CGTTAATACTCCGCCCGTATCACGCAAGTTGTAC 685 32 100.0 33 ................................ ACTGGTGAAGCCCTACGGTCTTGGTCTTTATAA 750 32 100.0 37 ................................ CATGTTACTTCTGTGCTTTGCTCTGACTCATCCCACG 819 32 100.0 36 ................................ TGTCCAAGTGGATGCTTGTCGATCCTCGGCCTTGTC 887 32 100.0 34 ................................ GAGACAACGAGAACGCTGATAAGCCATACTCAGA 953 32 100.0 34 ................................ CATCTAAACCAAGAAGAAACATTATCGTGGCAAC 1019 32 100.0 33 ................................ AACCGAATGAACCAGCCAACGAGAAGTCCTATG 1084 32 100.0 37 ................................ TACACGAATTGGTTTCCCGTTTACATATTCCGTCGTC 1153 32 100.0 33 ................................ CTGAGCATGCAGCTATGGTAATTGGGAGCCCCG 1218 32 100.0 36 ................................ CCGTTGACTGATCTCATGGTCATTTTGGGGCTTGTC 1286 32 96.9 37 .......................T........ AGATCAACCTGGACAAGCTGGACATCCCCTCCTACAA 1355 32 100.0 35 ................................ AATTGAATCTCTCGAAATATTTTTGATAAAAAAAC 1422 32 100.0 36 ................................ CGCTATGAAATGGTTTATTGTGGGCGGGGCGTTATT 1490 31 93.8 0 ...................T.....-...... | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.6 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : CATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCCCGTTTTAAACAACCATTTTCAAGGGGTTCGCACTAAAGCGTTTGCAATTCCTTGCGTAGCAAGTGGTCGCAGCGGCTGCTG # Right flank : TTGCGGCACCCAGTTTCACTGGCAATCTGACGGCCTAGTTTCGGCGCTTTATTAGCCTGAGGGAAGCTTACTCTTTGGGGCGCACCTCAAACAATTCGTTGGGACTGATATCGAAGTATAAACATAACTTCACGATCAGCGCTGCCGAGATTTTTTTCTTTTCCATATTGGTGTTATGCATCAATTCCATAATGGTTGTTCTACGGTGGCCTATCTCTTTAGACAATTTCAAAACGGACATATTATCGTGCTCTTTTAAAATCTCGTCCAATTTGCAATGGAGTGTATATCTGTTATATTCCATTTCGTCCTCCGAATTTAAGGTATTGCACTTCAAAAGTGCATATGGTATATTGTGGATACAAGGGTTGAACTTTAAAAGTGCAATCGTATTAAGAAAATCCATTTGCGGTTAGGTTGCCTTTTATAGATACCTATCTTTTAAAAAATTCAGTGGAGGATGCATATGCCCAAGCGTCGCCCCCGCAAGCTTAACTATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 2691-4407 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000189.1 Paenibacillus durus ATCC 35681 S1_contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================================= ================== 2691 31 100.0 38 ............................... TATCGAAAGTATCAAATGTGCCGGTCTCTTCGCCCTCG 2760 31 100.0 38 ............................... ACTTGTTCGTCCTCCTTTTTTTGAAGCGCAGAATACAG 2829 31 100.0 36 ............................... GTTTGATTCGTCATCACTTATCCCTCCCGCGTATGG 2896 31 100.0 36 ............................... CAGCAACAGCGCTGATGTTTCCTGGTGTGAGATACG 2963 31 100.0 37 ............................... TTACGCTTAAACGGCCACATCCGTAATCACCTCCGCG 3031 31 100.0 34 ............................... AGGCGGCCATTAAGATGACGAATGACCAGCTTGG 3096 31 100.0 36 ............................... CATACCGCCTTGCCGCTTGCGTAGAACGTGTGTACG 3163 31 100.0 36 ............................... CATTCTGCAAATCTATCCCACCTTAATAGGCACGGG 3230 31 100.0 39 ............................... AGACCATTGCTAACGTGGACAGCCAGAGACGTATTCGAG 3300 31 100.0 35 ............................... AATGCTTTGAAGACACTGTCCAAAATCTTTTGTTG 3366 31 100.0 36 ............................... CTCAGACCAGTCTGCAAATTTTACGATGTTTTTCCG 3433 31 100.0 35 ............................... CGAACTCAAAGACGTTGCTGGAAAGGTTGTTAATG 3499 31 100.0 37 ............................... TTCGGTGCGGCGGATGTTACGGGCCAACATGAGGCCG 3567 31 100.0 37 ............................... CGAATCAACAAAGGCAATCGATACAAATGGGGATTGG 3635 31 96.8 34 ............C.................. TTCTATATAAATTAACATGTCCGTATCATATTAG 3700 31 96.8 34 ............C.................. CATAAATTCACATTAAAGTAAGTGATTTTTGTCG 3765 31 96.8 36 ............C.................. CATTCATGGTACAGGGCTTCTTGCAGCGTTTCGTAG 3832 31 87.1 37 ....A....G..C...T.............. AGCAATCCGACACTGGGCTAATCACTAAAACTTAGGG 3900 31 90.3 177 ....A....G..C.................. GTTAATGACACACCTTTGATTGCCCTCAATTCCGTCAAGTCGCTCTTGCTGCCCTGGGGGTAATTGCTAGTGCGAACCCCAAGCTCCCATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTTGCAATCCCTTGCGTAGCAAGGGGTGGCAGCCGGTCTG 4108 31 90.3 38 ......T.....C.A................ TGAACTGCAATCCCAATAACACAACCATCCAAGAGTCG 4177 31 90.3 36 ......T.....C.A................ ATCGGCTGTGACGGCATTCGCTTGGATATGATTACG 4244 31 90.3 36 ......T.....C.A................ TTCGAGACCAATAACGTCATATTCTTGTCCTTGATG 4311 31 90.3 35 ......T.....C.A................ TTTTTGGCTGGCCAGAAGGCAACCTCTGACGCGTG 4377 31 90.3 0 ......T.....C.A................ | ========== ====== ====== ====== =============================== ================================================================================================================================================================================= ================== 24 31 96.6 42 TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Left flank : ATAAAATTGTTAATGTGAATCATTTCAGTGTCTTTAAGCTTTTGTATGAATTGAAAAATGAATACCTTGTACATGAACCGATGTCTCAGTAATCTTTTAAATCAATGTACAGTGTAAATCCAATTGAGGCACTTTCTCATTTTTTTCTTGAAAATGTGGATACTCTAGACTATTGGGAATGGAAACAGGCTGGCGGACCGCCGAACTGGCGATCTTTTATAGGAAAACAAATCCGGATCTCAGCCTGATTGAAGTCATAGAAAAAGCGGAAAGGTCCCGGGCAAAACAGTAGCTAAACATGTTGCTGCCCTGGTCTGTAAGCTTATGTTTGGTGCGAACCTCAAGCTCACATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCTCTTTTTAAACGGTCATTTTTAAGAGATTCGCACTAAAGCGTTTGCAATCCCTTGCGTAGCAAGCGGTCGCAGCGGGTGCTG # Right flank : TGATAAGAAAGAGTATGAACGATTGAAAGTGGAAGTTGCTCCCCATGTAGGAGCATTTTGCTCGGCTGATCTATAAAAACGACGACTCCTTTTTTTACAAAGAACATTATTCATAGGTTGACGAGTATGAAAATAACTGGAAATCGAAGTTCCGAAGCGATAAGATAGAAGTGCTGGAATTGTACATCAAATTGGAAAATCAATGAATTGGGGGCGTCTAACGATGAAAATTGCGGTTGCGGGCGATCATGCGGGTTTTTCCTTGAAAGAAGAAGTAAAAGCTTTACTAACCAGCCAAGGGCATGAGGTAGTGGATTTCGGAACGCATAGTGAGGAAGCTTCCGATTTGCCTGATTATATTTATCCTGCGGCTTTGGCAGTGGCTGAAGGGAAGGCGGACCGCGGGATTTTTATTGATGGTGTAGGCTATGGAAGCGCTATGATTGCTAATAAAATCTATGGGGTGTACGCGGCGGTCTGTCAGGACCCGTTCTGTGCGG # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 5923-6153 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQQ01000189.1 Paenibacillus durus ATCC 35681 S1_contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5923 32 100.0 34 ................................ GCCGCATTATTAGAGGCGGGACGCTCATGCCGCA 5989 32 100.0 35 ................................ TAGTCAAACATCGTGGAAAGTCCCCATAGAACTGG 6056 32 100.0 34 ................................ ACCGAACCGCGTCTTGCCCGTCAGCAACCATCTC 6122 32 90.6 0 ..........A.A............C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CGATTCATGACTCGTCCTCCTGCAATAATGTCTGCAAAATCTCCCATCTTTCCTCATTAAGCATGGCATATTCTTTAAGCGACCGCATAAAAAGCTGTTGCCGTTTTAGCGGCTCGGCGTCACGCAGCAGTATCCCGATTCCGATAATTTGAGCGCGAAAGACAGGACTGTTGATAATATTTATTTTGAAAAAGATGGCAGTAACAATCCGCCTCAAGTATTCCGCTTTCTGAGGATAAGCTGGATAGGCTAGAAGCCAAGGGGGAGAGTATTAAGACAATAAACAGGTTTTTCTTGTCAGATCTTCTCGATTGTCTCTCGCTAATCAAAAAGTGCGAACCTGAAGCGAACATGAAAACCCCGGGAGGTTCACACCCCTTGCGGGACAAGGATTTTTGCGATATTTTGTAGTTGAAGAGTTATGAAGTGGACTGTTTTTACAGAGGTTCGCACTTTTTGGGCTTCAAACCCTTGCGGCGCAAGTGTTCTGTGGGCTACCT # Right flank : TACAAGCAAGCGGTACGCTACCAAACGGCGTAGTAGTCACTCCCTACCGGGAATGTGAAAGGAGGTTCACTGAATGGATAAACTAACTCTAACTGAAGCGCAACTACGAGAGATTGTCGACAGCTACGATATGCAGCATGAGGGGATCGATTCTTTTTTCAATCTGGAGAGCAAGGAGGTTGTCTTCGTCAATAATGAATTTTCTGATCCGGAGGACGAGGAATTGGAAGAGGAGATTGAAGAGGGGTTTGGCGAAATCTGGTTCCGCTTGCCAGAACGGTATTCCAGCGACGGGTACCGGGATATGGAGGATTTTGTAGATATTGTATCGGACGAACGACTGAGAGAGCTGTTGATAACGTCCCTTAGAGGGGGACGCGGGTTTTTTCGCCGTTTTAAAGATACGCTGGGCGACAACCCTGAAGAACTTGAACGTTACTATCAGTTTGTGTATGAACGCAACCGCGAACGGGTACTAAAGTGGATGGAAGCAGAGTTTG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //