Array 1 61446-60258 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMXF01000003.1 Klebsiella sp. CVUAS 11332 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61445 29 100.0 32 ............................. AACGACTGTCCCATGAGCTTTGCAAATTGCAG 61384 29 100.0 32 ............................. GGCGAGCGCGTAGTTACCGCCAGCACCTCGGC 61323 29 100.0 32 ............................. TCGTTATTCGTGAGCCGTCGGCCGAGGGTTGG 61262 29 100.0 32 ............................. CCGCTGCCGATGTAACCGCGCTTCTGTGCCAG 61201 29 100.0 32 ............................. CGCTTTGGCTTCATTGCGTTCTTTGTAGGGAA 61140 29 100.0 32 ............................. CGCGACGAGTGGGACGAAACGCCGCCGATCCA 61079 29 100.0 32 ............................. CGCGGGAGCCGACGTTATAGGCGAACGATACC 61018 29 100.0 32 ............................. GTTTTCAGGGATGTGCATTGAGTGAATGCATA 60957 29 100.0 32 ............................. ACCGAGGGTAATCATCGTTTAGCAGAACGTTA 60896 29 100.0 32 ............................. CTAGCAATACGAAAGGTGGAAACCTTTTGCGC 60835 29 100.0 32 ............................. GCGGATATAATAATGGCGATCATCCTGCAGGC 60774 29 100.0 32 ............................. GGAGAGGCAGTCGAAATTTATTAACGCAATGC 60713 29 100.0 32 ............................. GCAGTGACGCCCAGTCCAGCGTCACGGTATAG 60652 29 100.0 32 ............................. TTCTTTTGAGCAATACTACCTGAACCGTAAGG 60591 29 100.0 32 ............................. GGAGCATTTAAAAATCTGCTGCTGCACGCACC 60530 29 100.0 32 ............................. TGCGCGCGCTTCTTCTTCATCCGCTCCTTTGG 60469 29 100.0 32 ............................. GACTTATAGCCATCGCCCATGTCGAATACCCA 60408 29 100.0 32 ............................. GGGCGGCCGGTAGTCGTCCTTTCCAATAATGA 60347 29 96.6 32 .............T............... AACAGCCCACAAAACTTTTTGCATGGGGCCGC 60286 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : CAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 199892-198192 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMXF01000004.1 Klebsiella sp. CVUAS 11332 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 199891 29 100.0 33 ............................. TCACGCCATGCCGACAGCCAGAGTGCATCAGAC 199829 29 100.0 33 ............................. ATTTACCGGTCAGAGGGCTTGCCAAAGCGCAGC 199767 29 100.0 32 ............................. ATGAGGGGGCGAATTATCAGGTGGTGTTAACT 199706 29 100.0 32 ............................. ACTCCGCCCGCCCAGGGAGAATTTTTTTCAGT 199645 29 100.0 32 ............................. CAATAAATAGTCAGTGATCCGCCTCCCTATCC 199584 29 100.0 32 ............................. GCGTTTTCTACTTTTTGAGTAGAGCCTGAGAT 199523 29 100.0 32 ............................. ATTTCGAGTATCTGCATCAATACGTTGGTCCG 199462 29 100.0 32 ............................. AAAGCTAACTCATCTAAGGCGAATGAATATCT 199401 29 100.0 32 ............................. CGAGCCATCTTTATTTTTAATCTTTGTGACCC 199340 29 100.0 32 ............................. CGAGCGAGGCCTCCATAGTTTGCGACACCTGC 199279 29 100.0 32 ............................. GCGGTCATTTCCGCGAGGCCATCAGCCAGTTT 199218 29 100.0 32 ............................. GTCTGCCAGCTGAGCCGGTACATCAGCATCAA 199157 29 100.0 32 ............................. CCAGAAAGACCGGCAATGCTGTAGTTAAAGCT 199096 29 100.0 32 ............................. AGCACCAGCCATAGCCTCACGCCCTCCTGGAT 199035 29 100.0 32 ............................. GATGCAGAAATCAAACTTTTTGACGGCCAGCA 198974 29 100.0 32 ............................. TGCGCCGTCTCGAAACGCTGCGCGTACAGGCA 198913 29 100.0 32 ............................. TACCCGGCACCTGATTGTTATCGTCATCGACC 198852 29 100.0 32 ............................. AAAATGATATCGTAGAAAAACGGCAAGTAACT 198791 29 100.0 32 ............................. CCAATTTGATCAACATACGAATTATTAAGTGA 198730 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 198669 29 100.0 32 ............................. TATCATGCGCATTCCTGATTCAGCTGTTCAGC 198608 29 96.6 32 ...........................A. GATGATAAGACGGAAGAACTCATTGCGCTCAT 198547 29 100.0 32 ............................. TAGTTTACGTTCGAATCCACGCGGCCTGAATT 198486 29 100.0 32 ............................. CAGAGTCGCGTATCACAAAGCAGGACGAAACG 198425 29 100.0 32 ............................. CGTCTGGGGAATATCATCAGCATTAATTTGGT 198364 29 100.0 53 ............................. CCTGCCGTTGACGTCAGACATCAGACATCAGACATCAGACATCAGACACTAGC 198282 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTTTGCGAAT 198220 29 86.2 0 ............TC.......G.T..... | ========== ====== ====== ====== ============================= ===================================================== ================== 28 29 99.3 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTCAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGGGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //