Array 1 793-622 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDOM01000022.1 Bifidobacterium bifidum strain BIOML-A10 scaffold22_size1207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =========================== ================== 792 39 94.9 27 CA..................................... TTCCACTGTTGTTGTGTTGTGTGTTGT 726 39 100.0 27 ....................................... AAGCCAAATCGGACTACCGCCGTCAAC 660 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= =========================== ================== 3 39 98.3 28 GTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACT # Left flank : TAATTGAGTGCTATTTATAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTCAGGGATATCCTCATCTGATCGTAGCCTGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGCAAATATCGTCCAGTTGTTCGGTACACGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACAGAACGTCGTTGCGGCGAAACCCTTCATCTGTTTCAGATGCCTGTCAGATCAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGCGATGCGGACACATGGCATAAAATGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTACAGCAGCAGAAAAAGAAGAGCACGTATGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTCGATTCACCACAATAAACCAGATATGTAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACAAGTCGGTGATCGCCGCCGCTGGGGTGAGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACAAACTCACGCCGCTTAACTTGGCCTGCTGGGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTCATGTCTAACTATATTCGTGGTTAGATATGTTTCAGATGCCTGTCAGATCAATGACTTTGACCAAGTGATGCGCAATAGTGTTAGGGGCACCTCTGTTGCTGTCTTCTGGATAGCTTCCGGGGTGTGCTTTTGATTCTGGTG # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.20, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 1189-964 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDOM01000022.1 Bifidobacterium bifidum strain BIOML-A10 scaffold22_size1207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 1188 26 100.0 41 .......................... CTTTGACCACTCAGGGATATCCTCATCTGATCGTAGCCTGT 1121 26 100.0 40 .......................... CTTTGACCACGCAAATATCGTCCAGTTGTTCGGTACACGT 1055 26 100.0 40 .......................... CTTTGACCACAGAACGTCGTTGCGGCGAAACCCTTCATCT 989 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================= ================== 4 26 100.0 41 GTTTCAGATGCCTGTCAGATCAATGA # Left flank : TAATTGAGTGCTATTTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGCGATGCGGACACATGGCATAAAATGCGCAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTTTCCACTGTTGTTGTGTTGTGTGTTGTGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTAAGCCAAATCGGACTACCGCCGTCAACGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTACAGCAGCAGAAAAAGAAGAGCACGTATGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8036-8204 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDOM01000014.1 Bifidobacterium bifidum strain BIOML-A10 scaffold14_size8246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8036 36 100.0 30 .................................... CCCGCCAGATCTCACGGGCGGCGTCACATT 8102 36 100.0 31 .................................... TCCGGCATTCGCGTTGTAATGCTCTTGCGTA 8169 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 31 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : TACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCGGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCGGTGTCGTCCTCGTCGAGTTGTTCTTTTTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCCTATGTACGTAGGCCTGATCGTTCCATCGGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTGAACTGAGCTGTGTACTGGCCGCGCGTTTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTGAACAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCTATTT # Right flank : GAGCTAATCGGAGAGGATTCTCAGGAGATGGTTTCAGATGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //