Array 1 125-821 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMB01000061.1 Sporolactobacillus sp. THM7-7 NODE_69_length_2783_cov_109.851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 125 30 90.0 38 AGG........................... TATTGCTGAGCAGCATATTTACCGGTTCCCCGATACTG 193 30 100.0 36 .............................. TGGATATACCAAGCGCGGCAATGTGATTCTCTTGGA 259 30 100.0 38 .............................. AGTATCTTGGCGATGCTTTCAGGTCTTAGAGGAGAGTC 327 30 100.0 37 .............................. TCGTCTACGCCGTCTATCGGAGCCGGAACAGGAGACG 394 30 100.0 36 .............................. CCGACAGCATCACGCTTAAAGCAGATAAGACAACGG 460 30 100.0 36 .............................. TCAAGTCGATCAGGGAGAGCAGAAACAGAACAAGAA 526 30 100.0 35 .............................. CCAGTACCAGGTACTCCGGCAAGCCAGAGATTCAT 591 30 100.0 36 .............................. CCTGGAATGCCAGGGAGAATTTTGCGTGGATTGCCC 657 30 100.0 38 .............................. TAATCCGGAACCACGGCCTGAATTTTGACGCCTTCATC 725 30 100.0 37 .............................. TTGGTGCTGTAGTGACAATAATATTTGGTTGACCAAC 792 30 93.3 0 .................G...........C | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.5 37 GTTTTGATCTTACCTATTAGGAATTGAAAT # Left flank : CATACAAGGAATGAGCTCCTTTTTCATTTTCTTTTTTCACTTTTCAGGTGAAAAGTGAAAGTCCCTGTAAACCTTGGCGGCTCAACGACAAGCAAAGATTCATACCGCGAGCTATGCATATTCTA # Right flank : CTTCCATTCAAAAAGCTGATAAGCGAGTGAGGTCAAAGTTTTGACCTATGAGGAATTGAACCCCCTTTATTTTTCTTTATCTGGCGGCGAGTCTCAATAAGTTTTAATCAATATATAAGGGGGGACAGAGTCAGCATCATAACCAGAGATTGATTTTACCTATTTAAACTTTTTTATTACAAAAGATTGGCCTGAAAGTTAATAAAGTGGTTCAATCACTTGTCACACGTACGTTTTACGTAGATAAATTAGCTCAGACTGCTGCTTTTGCCAGTTGTTTACGGCATCCAGTGGGCAACTTGCCTAGAAATTTTTCGATGATCTGATCCATTACTTTTTCAGATAGGACATACTCGTCTTTGAATGCTTCTTGAAACAGATCAAGCAGTTGCCGGATCGCTTCGGCGAGACTGATATCCGCAAGTTCATCGACCATGAGATAGAACAGTTCGCCCAATGTTCGATCATCTTCCTGTTCACGGTGCTGCACCGCAAGCAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATTAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 37281-33920 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMB01000026.1 Sporolactobacillus sp. THM7-7 NODE_26_length_46708_cov_89.2535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 37280 30 100.0 39 .............................. ATCATCTCTCATCCGAACAATCCCCTTTCGCGTGGCTCT 37211 30 100.0 39 .............................. CTGGCCGGATTGGCTTCTGATTCCACTTTCTGAATGACT 37142 30 100.0 37 .............................. TCGTATTCAGCTACCCGGTGCATTTGATTCGTCCGCT 37075 30 100.0 37 .............................. CGGGCAAGTGTATCTGAATACGATGCGACAATCACAC 37008 30 100.0 37 .............................. TACGCAAACTACAACGATATGAAGCAAAATGTAGGTA 36941 30 100.0 36 .............................. CCGTTACAAAATGACCTTTATCATCCTTCTCTTTGA 36875 30 100.0 36 .............................. AGTCTTCTAAGTATTCGATAAAATCGCCGTCCTGCT 36809 30 100.0 37 .............................. CTTTTTCGTACTGGATCATGTCGTCCGTTTTCTCGAC 36742 30 100.0 36 .............................. AGTTTGGCAAGCTCTTCTAGCGTCCAGTTATATTTC 36676 30 100.0 38 .............................. CATTCATCCATAAAATTTCGAAATATATATTGCCCTTC 36608 30 100.0 37 .............................. TTTTTTCACCTGATCCGCTGCTTGTAAGTTTTTTTCC 36541 30 100.0 36 .............................. CCGGTTGTTTCTGCCTTGCTGCTTGTTGTCAGCTTG 36475 30 100.0 35 .............................. AGCCCAGTGGTGTATGCGCGGCATTTATTGACTGG 36410 30 100.0 36 .............................. AGCGGATACCTGTACTGCGGAAATTGTGGCGCGCGT 36344 30 100.0 35 .............................. CCAAAATAAACCGGAGAAGATCAAAGAGGCTCTGA 36279 30 100.0 36 .............................. CCGTATAAACATCTGGAACTGACTGTTTCGGCTTTG 36213 30 100.0 37 .............................. CCGGGATGACAACTTATGAGCAGCGTCAAAGGTCTGG 36146 30 100.0 36 .............................. TATTTAACTGTTGGACCTCGGAAAGCCGGCAACCGG 36080 30 100.0 36 .............................. TTGTGCAGGTATTCGCTTGTTTCCTCTTCCGTCTCA 36014 30 100.0 37 .............................. CCGGAAGAAGAGTTTGAAATACGTGAAGCTGGGCTGG 35947 30 100.0 37 .............................. AATTTTATCGAAATGAAATCCACGGGTACGCGAAATT 35880 30 100.0 36 .............................. TCTTCTCGCGTGATATGCACATGGAAGGCGCGAATG 35814 30 100.0 37 .............................. TACAGCTGCGAATTGCTGATGCCCGATTCGTGTAGTT 35747 30 100.0 37 .............................. TACGGATCGCGAGAATAAAGATCGAAAAAAGAACTGT 35680 30 100.0 36 .............................. GCGTTAGAAAGAGTAATTGTATCTAACCTTTGTCCA 35614 30 100.0 37 .............................. TCCCACTTCCTGTCTGCTTCGCTATAACGATCTCGAA 35547 30 100.0 37 .............................. GAATTAATGAATTAACCACTGATAACGGAAAGCTTGA 35480 30 100.0 37 .............................. TCCGGTCTCTGGAATGGAATAAAGTCGCTTGCGTCAT 35413 30 100.0 37 .............................. TTGGTCCGCTGAAAGATGGAGTACAGCTTCAGTCCGG 35346 30 100.0 37 .............................. TAAAAAGTTCCTATAAACCCCTTGACGTACTACCGTA 35279 30 100.0 36 .............................. CTAAACTTGTAGAAATCCTCAAAGGGGGAAAAAAAT 35213 30 100.0 36 .............................. TTTTCATTGAGCAGTACAGCAACCTTTTCAGGCGTC 35147 30 100.0 35 .............................. ATGAAAGCCGTTGTGAAGCTATAGCGTGCTTCAAA 35082 30 100.0 37 .............................. GCTTGAACCATAAAATTGAATAATTGCGTTCCGAGAT 35015 30 100.0 38 .............................. TTGGGCCATTAATGGCCGATCCTTTTTTACAGGTCATT 34947 30 100.0 36 .............................. CTTTACAAAGTCAAAGCAAGTTAAGCAGCAGGCGGC 34881 30 100.0 39 .............................. TTCTCTTTCGCGGCCATTACCGCGTCATCAACGGATGCC 34812 30 100.0 36 .............................. TTGACTATGAGAATTTATGGATGGCGTATCAAAATG 34746 30 100.0 35 .............................. AAATAAGGGGGTAATAATACAAGCAAAGCTGTTTC 34681 30 100.0 37 .............................. TTTGTTCAGAAAAAAGTTTGAACCGGGCCATCTTGAA 34614 30 100.0 36 .............................. TTCTCACAGGCATCGCACCAGGCGAGTGCCTCATCC 34548 30 100.0 39 .............................. AAGTATTTGGCGATTGCTCCGGTTGATTCCGGATACCAA 34479 30 100.0 35 .............................. GCGAACATGTCAAGGAAAATTGTTAAAATAACGCA 34414 30 100.0 37 .............................. TAAACAGATTGTGATGCAGCCTTGGCAGCACTTTGTA 34347 30 100.0 37 .............................. ATGAACGCCGATGAAATCTTGACGATGGATAGAGATG 34280 30 100.0 37 .............................. TTCGGTCATGCACGAAGAAATGCCAGTTTTGATCAAT 34213 30 100.0 37 .............................. AACTTATCCCCGAAAAAAGTTGCTACTCGTACATAAG 34146 30 100.0 36 .............................. ACGGTGTATGTTCTGCCGGATGCTTTCGGCTTTCTG 34080 30 100.0 36 .............................. TGGAGAAGCCCGATGGCGATACCAGTCAGGAGCATC 34014 30 100.0 35 .............................. AATCCTTGATTAAGAGTGCATGTCGAACGGATAAG 33949 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================= ================== 51 30 99.9 37 GTTTTGATCTTACCTATGAGGAATTGAAAC # Left flank : ACGGTTCACAGCGGCTGCTCATGGCTTTGAGGGGCGGACGGAAAGTCATGTACCTTATCAGAGTAGAAGTTGCTGTAGGAGTTGGAGGCATGACACGTATTATACTTTTGATGATCGACCCCCTTTCTTTCTTGCTTGAGAAGACTTAAAAATGATAAAGAACATCTACTAATATTTATAACATAAATGTAAGGTTATGGGAATTTGTTTTTTTGAAAATTATAAATTATAATATAATCAGGTTGTATAAGAGCGAAAGAACACTAACTTTGGAAAGCGATCGATGAATGACCGATTCAAAAACGAACGAAAGCAAGGACAGCACAAATGGCTATTGTCGTCGACCCCGAGTAGCGTATCAATCCCAGGGGATCGACGACATTTTGCCATTTGCATAATCCTTGGTATAATAGGGTCAAGAGCCAGGATGTCCGTTATCTTTGTAAAAACTATGGGTTTTATGGCAGAAGAAAAAACCGGTATTAGAGCCGTATTTTGCG # Right flank : TTCCAAATCAATTGACGATCAATTAAAATCGTATTGTTAGTGTTGATTCACGGAATTAAGTTGTATGATTACTAGTGCCGGATTAAACACCATCCTCCCATGAGAATCCCCCTCTAACAAAACCGGAACGTTTTCCAATGGCCTGAGCGATGTATGCGGATAATACCGGTACCATAAGGCCCATAGCGATACCGCCGATTGAATTCATTTGATGGGCAAACGGATTATACTGGGAGCTTCCGGGTTCAGCAGAATGAATGCCGAACATAAAAGAGAGCGCCAGCAGGACACCTCCGGCCACAACCACCGGGATCATATGGGAAACGCCGTTCATCAAATCAACATAGATTTTATGCAGGACAGAGTCTTCACTGTTTGTATGCTGTCTGCTAAATTCAGTCGTTTTTCTCTGACGGCCTTCTTTGAATGGAGGAAGATCTTCACTCAGGACTTTATCGATCAGTTCATCGGGATCCTTAATTCCTTTTGACACAGAAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2333-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMB01000036.1 Sporolactobacillus sp. THM7-7 NODE_36_length_28234_cov_65.152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2332 30 100.0 36 .............................. GTTTATAGTGCTCCGCAACTTTTTACAATTTAACTC 2266 30 100.0 39 .............................. AAATCAAAACTAAAAGGCGTTAGGCTTCAATGTCAGCGG 2197 30 100.0 37 .............................. TAAAGTTTGACTGTTTCATAAACCCAATAATTGTTTC 2130 30 100.0 35 .............................. TCTGTATCTTGTTTTATTTTTTCCAACGGCTCCGC 2065 30 100.0 39 .............................. ATAGTAAAAAAATGTAAACTATCCCCCACGCCTGATTGC 1996 30 100.0 36 .............................. TTACCTTCATTCAAATAATAGCAATCAACTAATGAG 1930 30 100.0 36 .............................. CCGCAATCGCACTATGGTGCAAGAAAAATGGCACGA 1864 30 100.0 35 .............................. CTGTTTGCGAGCGGGCGCTTGACTATGGGCTCGAT 1799 30 100.0 37 .............................. TTGAGAAAAAACCCGAACCGTCCAGCGCCTTGAACGC 1732 30 100.0 36 .............................. TCAAATTTCACATAGTTGTACATTCTCGATATCCGC 1666 30 100.0 36 .............................. AGAGTTATGATTCAAATGTCCATAATCCGCAAAGCT 1600 30 100.0 37 .............................. CTGGGCAATACGGTATCGAAGCATCTCTTCCACACGG 1533 30 100.0 37 .............................. TGCTGCTTCGACAATAGATGGATCTAAATCGATCTCG 1466 30 100.0 37 .............................. CCTTTTCCGGAAGAGCAGAAGGGCCCACCGTATCAGT 1399 30 100.0 36 .............................. TACAGAGCGCTTCTAATAATACTAATATCTCACCTA 1333 30 100.0 36 .............................. TTGCCCCGGTCGTGCATGCTGATTTTGAAGAAGTGG 1267 30 100.0 36 .............................. ATAAATTTTCTTCTTGGCCTTTTCATTAGCCATGAG 1201 30 100.0 35 .............................. CTTCATATTATTGATGACGGGGATGAGTAGTGTCC 1136 30 100.0 35 .............................. ATGCTGTGCTAACGGGGAAACTCTAAGTCCAAAAA 1071 30 100.0 36 .............................. TCGTAAACAGCGCCTTCTGCAATTCCCCAATCGCCT 1005 30 100.0 37 .............................. CTTTCTGCGTAGCCTTCAGCAATGCTTTTGTTAGTTG 938 30 100.0 36 .............................. ACCTATCTAATTGGTGAAACTGAGATCAACAATGAA 872 30 100.0 36 .............................. TACTATCCGTATCTGGCTGCGCATTTACATGACCCT 806 30 100.0 36 .............................. TGCAATTGAACTACACCCCTATTATAGGGGATCAAG 740 30 100.0 37 .............................. GTACATATTCCAACGAATAAATCAAGTCTTTTTCTGT 673 30 100.0 40 .............................. ATATCGGAATCTACAAAGAATCGGGAACGGAAATTCCACC 603 30 96.7 37 .............................T ATCGGCAAACCTAGCACTTATACTTTCAACATTGTGG 536 30 96.7 37 .............................T CCTTTTTGCTGCTATCCGCGTGAGAAGTTACCGTAAT 469 30 96.7 37 .............................T GCCGGAAGTGGTTTCTAGAATAACGGGTGCGGTTGTG 402 30 96.7 36 .............................T GACTGATAGCTTTGCTTTGGAAACTTCTTAGACTTA 336 30 96.7 40 .............................T ATTCTTCCAAAATCGGAATACAGTTGGCGATCCATGACCA 266 30 96.7 35 .............................T TATTTCGACGCCGATACTGCACGGTACATCGTTCC 201 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 99.3 37 GTTTTGATCTTACCTATTAGGAATTGAAAC # Left flank : ACCGTAAGTCTTCGACAATATCCCCAAGCTTTTCCAAAGCCCCTGCGCCGTAACAGATGGTTTTCGGTGAACGGAAAGTCGAAAAAGAAGCCATAAAAACACCTCCGGTAAAGTGAGTATATAATGAATGATCGGCAGACGAACGGGTCAGGCGGATCATGGATTGAAATGGTTGGACGAAACAGGTAGGTTGGATAGACGGGAAGTTTGAACTTGTTGAACAGCCAGGTAGATTGGGAAGCGCTTACATAATATATGAGAGGAGGGTGTAAAAGATGACCTATAACGATGTGGTAATACTTGTGAATAGTTAAAGACAATATAAATAAAAACTGTCGTCGATCTTGAGTAGCGTACAACACCCCGGGGATCGACGACAAATTTATTTTGGCGAAAAACTTTGATATAATAGGGCTGTAGAGAAATCGGCGTATGAAACGCTCGCTGAATAGTAAATTTTGAATGCGTAAAAAAAAAATATTGTTAAGCCGAATTTTGCG # Right flank : TTAGAAGAAACAGTGCTATAATAATTGTTCTGAAATAGTTTTGATCCTGAATTATTCATAGAAGGTCATTCCCCATGATTCAGGTGGTAGTTTTGCAAAGAATTTTACAGTTTTTTACTTGGAAGAGCATCCAGACAATTATTTTGGACCGATGTTGACCCGTGTTGAACGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 138-2622 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMB01000044.1 Sporolactobacillus sp. THM7-7 NODE_44_length_13707_cov_160.746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 138 30 100.0 36 .............................. CCTAAAATTCAGGCAGAGGTCACAACTTTTTTACCA 204 30 100.0 37 .............................. ATGTATACGCGTTTCTCCATCGCCACATATCAGCCTC 271 30 100.0 39 .............................. TTTTTCCAATCTCCTGTTCGTTCTACGGTCCATTTCTTT 340 30 100.0 35 .............................. CACCGAGTGGAACGAACGCTTTGAACAGGTTCATC 405 30 100.0 36 .............................. AAGTTCGGCTATGACCGTCGCATAACCTTGAGCCTT 471 30 100.0 38 .............................. TTTAATCAATATTTCTCTGTGCCTCTTTCAATCCATCT 539 30 100.0 36 .............................. AACAGCCGGGCCACTTCTTCAATGCCTGATATAACC 605 30 100.0 36 .............................. TTTCTCCTTTTAATTAATTTTTTGTCTTGCTATGAC 671 30 100.0 36 .............................. AAACAGCCGGGCCACTTCTTCAATGCCTGATATAAC 737 30 100.0 36 .............................. TGCCGGGTGGACGAGTTGTCTTTAACCTATGTATCT 803 30 100.0 37 .............................. AAACGGATGATACAGATCGACTTGGAATGCAAGAAAA 870 30 100.0 36 .............................. CTCAGAAACTTGAACTATGTGAGAATTTCCTTTACG 936 30 100.0 37 .............................. ATCATAACCGTCTGAAGAAAGTTCACGACAAGGAAAG 1003 30 100.0 37 .............................. AACGCGGTGGTAAAACATATGAAGCTGATTCGGCAGC 1070 30 100.0 36 .............................. GAGAAATTCAAAAGAAAAATGGCATGTGAAACAATC 1136 30 100.0 37 .............................. ATAGTTTCTGCCTGCCTCTGTTAAAATGGAAATGTCT 1203 30 100.0 36 .............................. TCCGAAATAACGCGCCACACGCCGTTATAGAGGACG 1269 30 100.0 35 .............................. CATCAACTTTCTCGTCACTCGGCTTCACGAGATTT 1334 30 100.0 36 .............................. CTTGGGTTAGATGCGTAATCCCATACTGTTTTCGCC 1400 30 100.0 36 .............................. TCCCGCGCAATCTCCCATAGAGTATCACCACTACGA 1466 30 100.0 38 .............................. CTAAAGAAGTTACGGCCAGTCATGAGATGTTTGACCGG 1534 30 100.0 36 .............................. TCCTTTCCGCTGAAGAAATAGACATACTCGGAATCA 1600 30 100.0 38 .............................. ATAACAATGGTAAATCAATCAATATAAGCAAGGGAAAT 1668 30 100.0 36 .............................. CAATACCGATCAGTCAGGCATCGTTCAGAGGTTTGA 1734 30 100.0 36 .............................. TTTCCCAATTGCTCCATGACAATTTCAGCATCACGG 1800 30 100.0 37 .............................. GCTTTGTCTATGTGGCTTCCAAGTATCTAACTGGAGG 1867 30 100.0 37 .............................. GGTGATCCCTTTCCTGTTGGGATACCAAGACCGGATC 1934 30 100.0 38 .............................. GTTCTTCAATTCCTACCCTGTGAATAGATCATACCTCT 2002 30 100.0 36 .............................. GTTCTACACTCATGTCTTTGATCATCTGACCATCTT 2068 30 100.0 36 .............................. TCCACATCATCAGCACCACTGACGAGTTTAATCACG 2134 30 100.0 37 .............................. ATGACTTGCTTCTGCCGGGAACCGAGATCCCTGTTAA 2201 30 100.0 35 .............................. CAAGCCGTTGAAGCTGTTGCTGATGCTCAGACGGG 2266 30 100.0 36 .............................. ATTAATATGTAAAACTATAACCTATGAACGGAGTCG 2332 30 100.0 35 .............................. CCGGCAACAATCACGGTTGCTTTTGGCAGCTTTCC 2397 30 100.0 36 .............................. TCGTTTTTTTGCCATCGTTCAATCGTTAAGAAATGG 2463 30 96.7 36 ....................T......... ACTTCTTGCTTTCTAAAAATTGAACAGAATCAGCGA 2529 30 90.0 35 ....................A.....C..T GTAGTAGGACGTTGAACACGGGTCGTTGCCAGAAT 2594 29 70.0 0 T....C......A..T..-.A...C.G..A | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 98.9 36 GTTTTAATCTTACCTATGAGGAATTGAAAC # Left flank : CCTTAGGGCTTCTCTGCGCTTTTTTTGCTTTTTCAGGAACATACGATCCCTTTTCTTTGTGCACTCCATGACTTAAAGATTAAATTGACTAGAAAACCCAAAAACCTTATTGATTCAGCAAGCCCTATAATAACATCG # Right flank : ATAACTCGTTTTTTTTGGAAAAATCTTACCTTCAAGGAATCGAGGCGTGAATATGCGATTAAAAATAAAGTTTCGTGCAGCGGAAACCGGGAAGAAGCTTTCGCTGCCGATTCATTATCAGGTGCTGCTGCAAGGGTTGATCTATCATTCTTTGGATAAAGACCGGGATTTTCAAACGTTTCTTCATGATAAGGGGTATACTTATGAGAATCGTCGGTTTAAATTATTTACGTTCAGTAGGCTGATTGGGCAGGCCATCTATCACAAGGCAACTCGATCGCTGATTTTCAGTGAAGGAGCCGAGTGGTATGTGTCGTCCGTCCTTCCGGAATTTATTCAGACGTTCGGGGAGAGAATGCTGCTTACGGAGCAGATCAGGGTTGGCGGGCAAGTGTGGACGGTTGAAAGTGTGGAATACAGGAATGTCGTGAAACGGCAGGGGGCGGCGGATATTTACATGCTGTCGCCGATTACCATTTACAGTACGTTTGAAAAAGAAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //