Array 1 54041-52214 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGU01000018.1 Vibrio cholerae strain N2762 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54040 28 100.0 32 ............................ AGTTGATACAAGAGATCCGGTAACGCAGACAA 53980 28 100.0 32 ............................ AATCAGGTTTTGACCTTGGTCTAGCTTTTCAA 53920 28 100.0 32 ............................ AATATGCTCAGGGTAAACCTGGTTTTGAATAC 53860 28 100.0 32 ............................ TTTCATCGATGTAGTTTTCCGGCAAGCCGCCA 53800 28 100.0 32 ............................ ATCGAGCCGCAATTGCAGCAAATCCACTGCAT 53740 28 100.0 32 ............................ TTAATTTCTCTTTTTAAGAGTCCGTTTTTGGC 53680 28 100.0 32 ............................ ATTCAGACCACGTTGAGCCGGGACTCTAGTCC 53620 28 100.0 32 ............................ TGTACGGCTCGACTCGAATGGATTTAGTATCG 53560 28 100.0 32 ............................ GTCATCAATAATATCGTCGTCCTGAATGGCAG 53500 28 100.0 32 ............................ GTGATGGTTTGAGTCGGGTTAGTGGTAATCAG 53440 28 100.0 32 ............................ TTTGAGACCAGTACCCATCTCGCACGAAGAAA 53380 28 100.0 32 ............................ CTAATGGGAAACGGTGTGCGAATCGTTGTCGC 53320 28 96.4 32 ...........T................ ATTTGATTTGGATGTCTTCATCCTCTGGTGGG 53260 28 96.4 32 ...........T................ AGCCGTTACCCCCGGACGAATAAACGTCCCCA 53200 28 96.4 32 ...........T................ ACCACTGACAGCGCCATTAGCCACATTATCTG 53140 28 96.4 32 ...........T................ GACCATTTGCGGAACGGAAGGACCAAACAACT 53080 28 96.4 32 ...........T................ TGTTCTCTGCGTCTCTGTGTTTATGACCTAGA 53020 28 96.4 32 ...........T................ AGTAACGCAAACAATAACAACGGAACACGTCA 52960 28 96.4 32 ...........T................ TTGCTTTGAGCTGGGCACTGTCTGAGCCGTGA 52900 28 100.0 32 ............................ TAATGAAGACGTTCGTTCTCTCTTAAAATCAA 52840 28 100.0 32 ............................ GTCGAGCATTTGAAGCAACCAAAAGTGAAGCT 52780 28 96.4 32 ...........T................ TGACCAAGCAGAACAGTTGCGCCGCTTGCTGC 52720 28 100.0 32 ............................ TGAGATTAAAGCCAACATCGAGAAGGGATGGT 52660 28 100.0 32 ............................ CGCATCCAGGAAGAACTCTGAATAATTCGGGC 52600 28 100.0 32 ............................ AAACAGCTCGCTATGCCGATCACTAGAATTCG 52540 28 96.4 32 ...........T................ ACAAAGAAAAAACCCGGAGCGAATCCAGAAGG 52480 28 96.4 31 ...........T................ AAAACTTCATCAAGGAGTGAGGGCGTTTTTG 52421 28 96.4 32 ...........T................ CTCAGTGATTTTGATATTGATGGTGAAAAGCC 52361 28 96.4 32 ...........T................ ATTTTGAAACGGAGGCACTGGTTTGTGTTCTT 52301 28 96.4 32 ...........T................ ATCAATGTGGCTCCTTTCTAGACTGACAACTG 52241 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 31 28 98.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 837-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGU01000041.1 Vibrio cholerae strain N2762 NODE_165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 836 28 100.0 32 ............................ TAAATCTTCTTCAGCATTAGTGACAACATCTC 776 28 100.0 32 ............................ TCATTAAAAGCAAAATCGAACGGCATGGCCTG 716 28 100.0 32 ............................ ATTAGGGACATCTCTGCCGACTAGGTTTAAAT 656 28 100.0 32 ............................ TTCTGCTCTTGCAACATGGCAATCGCTTGGTC 596 28 100.0 32 ............................ ACGAGGAAAGCATTGAGGATAAGGCAAGAGTT 536 28 100.0 32 ............................ ACAGTGTGCATTAATGTCACGTTGCCAAAGTC 476 28 100.0 32 ............................ TCAAGGTTGTGTTGCTCAAACCACTCTTTGAT 416 28 100.0 32 ............................ TCGCTTTTGTTGAGTTGTGAGTTGGCCATCGA 356 28 100.0 32 ............................ GAGGCTGTTGCGGGTAAACAGGCGCTTATTAG 296 28 100.0 32 ............................ AAACTGAAAGCGGAATCTTTACGACTCGCTGA 236 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGATGTTCAACACGGTCAGTTTAGTTTCACAAAGGGCTTCATCACCGCTGAAATTATGCTTTCTTTGTCGCGGACTCTTAACCGTGGTCAACTTAACCTTGATCGTTTTAAGTTTTGGCAGCCAACATCACAGCTTTTGGCGTTGGACGTATGTTTGCTTGATGCTTTTGCGTAAAATGACTTTCAAGCAATTGTGTTTAAAAATCATTGTTAAACAATAGGCTACGAAACTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGTCGCGGTGGTTACGGTTGTTGTGATTGAGTTTAGTGGTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGTTGTTGTATTTGAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGAGCAGCATTAAAATTTAGAACTGAGTTGTATATGACAGAAAGAGAAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //