Array 1 1691924-1691346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021393.1 Bifidobacterium breve strain NRBB52 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1691923 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1691857 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1691789 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGAAAATCTACTA GG [1691773] 1691719 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1691652 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1691583 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1691515 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1691447 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1691378 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GCCTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACATCCCGCCACC # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1705158-1702198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021393.1 Bifidobacterium breve strain NRBB52 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 1705157 33 100.0 36 ................................. CGCAGGAACGATAGCAACGCCTGGGCCGCCAATCAG 1705088 33 100.0 34 ................................. TTCAACGTGAGGCACATGCTGCCGTTGCTCATGC 1705021 33 100.0 35 ................................. AAAAACGGTTTCAAGCAGTCGGCGAACGATTTCAG 1704953 33 100.0 34 ................................. CTTTGCTCCACTGAATGAAGAGGGAGAATCCCAG 1704886 33 100.0 35 ................................. ATCGGTGCCGTCATCCTCAAGCACCGGCTGGAACA 1704818 33 100.0 34 ................................. ACGCTTTAACCGATAGAGGAGAAAAAATATTATG 1704751 33 100.0 35 ................................. GGTTATGCGCCTGAATATGCTCAAATAACACGCCT 1704683 33 100.0 35 ................................. TTCGAGTGTCTTGAGCGGAGCCTGTTTCCCTTCCG 1704615 33 100.0 34 ................................. CCTGAAGCTGCTTCATCAGCGAATCGTCAAGCAG 1704548 33 100.0 35 ................................. AAAAGCGTGGCGATGATGCTCACCCAGACGGCTGG 1704480 33 100.0 33 ................................. TCGCCACCACACCTGGGGCATGGCGAACACCGC 1704414 33 100.0 36 ................................. TTGTCCGCGCCGTAGGTGCCCTCGCGCACCAGGTAG 1704345 33 100.0 33 ................................. CGGCCGGCGCGGCGACGAGTTCGCCCTTCGCAT 1704279 33 100.0 34 ................................. CCGCACAGCCATTTCTCCGCGACAGCCTGCCCCG 1704212 33 100.0 35 ................................. ATTTTGAACTTTGGCAGGAAGATGATGAAGGCCGG 1704144 33 100.0 34 ................................. CAGTAGTTGAGGTTGGCGGCGTCGTGGAGCATGC 1704077 33 100.0 34 ................................. CAGCAGGGCAGCAAACGGCGGGTGTCAACGTAAT 1704010 33 100.0 35 ................................. ATCTGCATCAAATCACTCGGCGAAGTAACCTTCAT 1703942 33 100.0 35 ................................. CTGGTACCACGCCAAGAGCTGGGCCATGACACGGC 1703874 33 100.0 33 ................................. CGCTTTGATTTGCGGTGTTTCAAAACGTAACCG 1703808 33 100.0 35 ................................. ACGTGAAACGTTTGGAGGAACCACCGACTTGGAAA 1703740 33 100.0 33 ................................. CTCATTGACATCCCCGTTATCAATGAGATGACC 1703674 33 100.0 36 ................................. AACGAGGCGTCGGATTGGAATTATCTGGTGGCCTAT 1703605 33 100.0 35 ................................. GCGTGACCAGTGGGACAAGTACGCCAATCCGGGTC 1703537 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGAC 1703471 33 100.0 62 ................................. TTGAATATGTGTACGGTGATTGCGATTTTGATTATGGTCGCTCCCCATCCGGTTTGATTATG 1703376 33 100.0 33 ................................. CATGCTTGGGTCATCATTGCGCCGGCCGGTCTG 1703310 33 100.0 34 ................................. TGGTTATCGAGCCACAGGGGTTCCGCGGAAGTGG 1703243 33 100.0 36 ................................. GTCCAGCACCACGGTGAACGTGTCGGGCAACACCAC 1703174 33 100.0 33 ................................. CACGACTTGCGTGACCGCGTCCACCTTGTTGTC 1703108 33 97.0 33 ............A.................... TGACTGGGAGGGTCAGTCCGGAGGCGACCCTTT 1703042 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 1702974 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1702906 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1702837 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1702770 33 100.0 35 ................................. GCCGCCTATGACGGCGGCATGCGGCCAGCGGCGAA 1702702 33 100.0 34 ................................. AAAGCCACCGAAGAAAAGGAGAAGTAAATCATGG 1702635 33 100.0 35 ................................. ATTCTGGCAAAGGGCTCTCTGACCCCGATCGCGTT 1702567 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 1702499 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1702433 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1702367 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1702299 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1702230 33 97.0 0 ..........C...................... | ========== ====== ====== ====== ================================= ============================================================== ================== 44 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCTTGAGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCTCATCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCGGAATTAAACCGACATCGGTTTAACAGCGATTAAGCCGGGTTTGTTGTTAAGCCGGGGAACGGTTCGGGGTCTTGGTGGCTGGCCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //