Array 1 1134355-1132969 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGD01000005.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1134354 25 100.0 39 ......................... AAACGTATCATCAAGGTGAAGATGTACAATGTATCACTC 1134290 25 100.0 41 ......................... CTCAATTTCTTATCCATTTTTACCGTTATGTGTGTTTCCAT 1134224 25 100.0 41 ......................... CTTCAAAGTGGGCCATGCAGAATGGGCATACGTATCTATGA 1134158 25 100.0 41 ......................... CCTATCCACTTCTTTAACAATTGTAAATCCTCTTGGTCAAA 1134092 25 100.0 42 ......................... GTTAAATCCATTTGAAATCACCGCTAAACATGAAGAATATCA 1134025 25 100.0 38 ......................... CTCAGGCCGCAGGGCCAGAAAAGGAGCTGAGGATCATA 1133962 25 100.0 40 ......................... AGAGAAATAATGCGAATAAAACTGAAAAATGATAAGTATC 1133897 25 100.0 40 ......................... TGTGTTTGGATAGTTTTGGTTATGTGTTTGTTTCTGGGTT 1133832 25 100.0 41 ......................... GTGGATCCTTACGTCCTAATGAGAAGAACGAATGAAACTAA 1133766 25 100.0 42 ......................... ATAGTGGAATATCTTCTTAAAACATCTTTCAATAGTTGAATG 1133699 25 100.0 40 ......................... ATATCATAACTCCAGAAACCGCAAATATGACATTCGTACA 1133634 25 100.0 39 ......................... AGGAGTGACGCCGTCGTGGAAAATAGAAAACGCAAGCAA 1133570 25 100.0 40 ......................... TCATATATTTGCACAATCTTGAGTTCATTAATTAACTCTT 1133505 25 100.0 37 ......................... AATAATTGGCGAGCAGGTTTTGTGCATTGTTTAATTT 1133443 25 100.0 38 ......................... CCCTTGAAGGGCCTTTGTTACGTCTGGAAGCTGTTCTA 1133380 25 100.0 43 ......................... TATATGGACATCTCCAATAAAGTTCTACCAGCCTTCAAAAAGT 1133312 25 100.0 37 ......................... AGAGTTACCTGCCTTGCCTCCACCAGGTACGGACCCG 1133250 25 100.0 39 ......................... TAGCCGAATACGAGGAGGCCAACGATTCCAACGGCAAGA 1133186 25 100.0 37 ......................... TTGTCACGTTTTTTGACATTAAAGACTGTCACGTCTT 1133124 25 100.0 41 ......................... TTTCTAGTTCTTTCCATCACATGATCATCTATTACGAATGA 1133058 25 100.0 40 ......................... AGATACTGTGTCTCATCAGTAGTAGGATAATTGTACACAT 1132993 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 22 25 100.0 40 GTTGAACCCATAACGGGATTGAAAG # Left flank : ATTATAGTTAAATATTTTCTATTAAATATAAGATTATTGAATAAGGCTCATAAAGTAGCCTATAATGCCCATCATATCTTTTAGTATAACATAAAAATAAGTTTTAAAATAAAATTTTTAGTATATTTAATAAATAATAAAATATATTGAAATTAAAATTAATAATATAACGCGTTCCTGGAAGGAAGAAACAGAGTAGTCATGTTGTGTATATATATATAGATACCTATTCTTAGATTAGATCATACTAAAAGATTCGATCCTTTCATGAAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCAAAACGAAATCTTTAGAGTAGTTTTACGTTTATAAATAGAGAGATTTCTTTCAGTTAGTGTAAAAGACCATGCGACCGAGAAAGGTAAAGAAAAGGAAGAGAAGTAAGGTCGCATGATGAGGTTAGGGAGGTGACGTAAAATTTATAGGGGAGAAAGGAGAGGAAAAAGAGTAGAGGTAAATAAATGCCTCT # Right flank : ATTATACACATTTCTAGTTAATTTTTATCTAATAAAATTTAATTAATATAAAATTATCATAATAAATCATAAAAGATTAGTATCTTAGAAGCTCTCGATGAAACGGTATTACCAATTTATAACCCCCTTCATCAAGATATAATTATGGAAGGAGGCACTATAGCCTTCGTAAAAGATTGGGGAGCTTTCTTACACGTTAAAGACAACATGATAGTTTGCTCCTTAAAAGGGAAGGATATGTGGAGCGTCTCTCCAGTTGAGCTATCTTCCATCGTTTTTCTCGTCACTGGTTCGGTTTCTTCTGAGGTAATTGCGCTAGCTAACGAGTACGGGATAGACCTAGTCTTCTTCAGGAAAGGCGAACCTGTAGCTAAGGTGATACCCGCAAGATACGGCGGTTCCATGAAGGTTTGGCTATCTCAACTTAAGGCGTGGAAGAGCTCTCGGGTAAAGTATGCCTCCGTCTTTGTTAGGGGGAAGCTGAGAAATCAGAGGGTAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [90.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 1141170-1142155 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGD01000005.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 1141170 25 100.0 39 ......................... TTGAACATTACACCTACAACATGTAAACCATCGTTGTTC 1141234 25 100.0 37 ......................... TCAAGACATTCTTAATGTCAGACATAATCAGTGTCAT 1141296 25 100.0 39 ......................... ATTATCTTCTTGACAGTACCATCTTTTAGCGATATCTCT 1141360 25 100.0 39 ......................... GAGACAGAGGCGGGGATGATAGTGATCCCGTCTTTCTTT 1141424 25 100.0 38 ......................... AAAATTAATCCATTTGATAAAAATACTGAACCATACAT 1141487 25 100.0 41 ......................... GCATAGTTTCTCTCCGGGGAGGACGATTTTTCGTCCTTCAT 1141553 25 100.0 36 ......................... ATAACCCCTTTAGCATCGTCATAGTATAGCATTACT 1141614 25 100.0 40 ......................... TTCGCTAGGAACTTACTAGGTAAATTGAATTGCAACAAAT 1141679 25 100.0 45 ......................... GGTAACATTGGTATGGGCATCATAAAAGCATGCTCATACATCCCT 1141749 25 100.0 34 ......................... TCATCGCCTTGATCCAATGGGATACTATATGTGT 1141808 25 100.0 40 ......................... CTTCTTTGTCTTTCTCTCATATTGTGCAGTTCATCTAAAA 1141873 25 100.0 41 ......................... GATGTGTAAGCCTTTGGGATCAGCTCCTTGCCTATAATTTT 1141939 25 100.0 40 ......................... TCTATTATTCCTTTATCGAACCACACTATCCCTCGGTCGG 1142004 25 100.0 38 ......................... ACCTGAAAGGCAAAATACTGATACTTGTTTGCTTCTTC 1142067 25 96.0 39 A........................ TTAACAAACTGGAAAAAGAAGGGATAGTAAAGAAGAAAA 1142131 25 96.0 0 ............G............ | ========== ====== ====== ====== ========================= ============================================= ================== 16 25 99.5 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : GAGAAGTACTTGTTAAGCTCTACTTATTTTACTTGTTTTATAAGTACTTTATTTTTTCTTCTATATGAAGAGAGAGACCAAATCAAGATAGTTAGTGCTCTTTTCATAGCTTTCATAATTCTCATTCTCTTAGTCTTTTTCTAGAAGAATATTTAAAATAAAATAAATATAAAATTTTATTTTTATTTTAACTTGTAAAGTAAAAAGTTATTGAAGTGCAGTTTAAATCTCTTGTACGATAAAAGTAGCTATTAATTCGATTCTTTCATGAAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCAAAACGAAATCTTTAGAGTAGTTTTACGTTTATAAATAGAGAGATTTCTTTCAGTTAGTGTAAAAGACCATGCGACCGAGAAAGGTAAAGAAAAGGAAGAGAAGTAAGGTCGCATGATGAGGTTAGGGAGGTGACGTAAAATTTATAGGGGAGAAAGGAGAGGAAAAAGAGTAGAGGTAAATAAATGCCTCT # Right flank : GAGTAGTCGTTCTTGATAGTGAGTTTAACCAACTAATCAAGCATCTATCCACGTCATACAAAGATGATATTTATTACTTATCGCAAAACTCCTTTCTAAGTATAGAATTGTTTATCTACATAAAATATATAATAAAATTCTATATTTAAGTGAAAAATAAATATCTGAATAACATAAATTTATACTACGTTTACCCTTCTATAGACAGATGATATTCGCCTTCCGCTCCACATTTCCTCTAGTCCCACATTAAGGTTCTGGGAAAGGAACTTTACGAAGTTCTCTTCGTCAACCCAGGAAGGAACTTGAACCTTGTATATCTTGTCTATATCTCTGCCCCAATAATAGTAAATCGTTATTAACAATGAAATTAGATCGTAATAGTTGAAGTGTATTTCCTTGGGCAAACCGGGAAATTGAAGTGAAATCCCTGGGACCGGATAACCAAGAACGCCCTGACTCTTCTCTCCCCTTGATCTCGTCGTACTCGTACTCCAGTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1796308-1795672 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGD01000005.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1796307 30 100.0 38 .............................. AGTTTCCTAGGGGGAAGCCTATCTAGTGCTCTTCTTCT 1796239 30 100.0 37 .............................. GCCTACATACATTACCAACTCTCTGTCGAAGGACCTA 1796172 30 100.0 36 .............................. AGAAGCTCTGGAAATTCAATGTTTCCGTCGTTAGTG 1796106 30 100.0 36 .............................. AGAGAAATCTATCTCTATCGGGACTACGTCCTCATC 1796040 30 100.0 40 .............................. TCGAAATATTTCATAAATAAAAAATAGAAAGAAGAAAAGG 1795970 30 96.7 39 .........A.................... TCAGAAAAGGACCAGGGAATGAGATAGGCCCTAAGATGG 1795901 30 96.7 36 .........A.................... TGAGAAAGGGGCGAAGGATAGAGAAAGAACCGCCAA 1795835 30 96.7 38 .........A.................... AAGAATCTGTATTTGTAATTGCGGGGGCAATACCCCCA 1795767 30 96.7 36 .........A.................... ACGTAGTCGTCGCTGAACATCGTCCCGCTCATCATC 1795701 30 96.7 0 .........A.................... | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 98.4 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : AGTAATAATTTGTCTGTGCCATAGCTGACTCCAGATGCCTTGATGACGATTTGATCTCTACAACTGTCCTGTTTTCCTTTTTGTATGCATCAATTTTCATTCCTTCTAAGGAGAGAGGGATCTCATCACCGTAGATTTTATGTATAGCCCTGCCTTTCTCCAGTCTACGATGCCCCTCGAAGGGAGTCACGTGTCTCGCCATGTACCACACTTCTCTGGGACAAACTTTCAGATACCAAATTAAAGTTCCTGTGATTACAACATCTTGTTTCAGATAAATGGACATGTTAAAGCTCTGTTATTTTGTGATTTTAAATTTTTTCACATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAAAAGGAAATATGTTTTTCAAAACATATTAATTTTGACGTAAAACTCCCTCGGCAGTGAAAGGTAAGTTTAGGAGGCAGCTTCACTGCCGAATTCACAGAAACGTTTTTTAGGGAGATTTTACGTAATAGTAAGCAGG # Right flank : GAGACCTCCTCCATGATTTGCGGGATCTCCAATTCCATACTATTGCTCAGGAATACGACTACTGCATCTCCCTTCCAGAAGCCTTGCTTTACCTGAGTAAATGATGATATTTCCTGTCCATTCACATAAATAGGATATCCCTTATCATAATGACTGAAGGAGTAACCGGAAAGTATAGTACCGGTGTAGTTAACTTCAGTATAAACTACGCTCATGTTAGATTGTCCTTCATAAGTGAGAACCCAATATTCCCCCTTCACGTTAACTTTAGTATGTATTGAGGCTGAATTTAAGGCTGTCCCATTAACGAAAAGAATACCGGATGGATAGAATCCCTTCACCGCTGGAGCTAAAGATAAATTGTACTCCTCCTGCATAGGTAAAGAAAGTGCGTGTAACGCTCCTTCGTAAAGGATACCCGTTCCTTTGTAAACTGAAATACATAAGTTAGTAGAACCTGGTAAATACTGAAAAGCAACTCCATATCCGTCTAAGATACC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : GTTTGTAGAAATCCTTAGAGGGCTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1806314-1806678 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGD01000005.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1806314 30 100.0 37 .............................. GTGAAAGTCTATAATGGAACAAATCCGCAAACATGCA 1806381 30 100.0 37 .............................. TGAACCGAAGGTGGTGGGCTGGTATTTGCCATAAAAA 1806448 30 100.0 35 .............................. CTCTCATGGTATCACCTCATCTTCCTCACCTACCA 1806513 30 100.0 38 .............................. TGAATCTGTATAGCTATCTTTATTGCGTTCACAAGAGT 1806581 30 100.0 38 .............................. TGAATCTGTATAGCTATCTTTATTGCGTTCACAAGAGT 1806649 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : ACCGCGTTAAAGACGTTGATGAGTCACTCATCTGGTAGGAAAATACATTTAATAAAATTTTTAAAGAAAATTTTAAGCCTTTTATCTAATAAAGTTTAAATTAAAATAAGAATTCTTTTTTAAGTTTTAAATTTATAAAATATAATAGATATATTCTTATATGTTATATATTTAATTTTAAAAATTTTTATTATATATTAGACACAAACTTTCTCCAGCTAAATGTCAAGATTAACTATCTTTATGAGATTAAAGGGAGTAAATAAAAGTAAATTTTAACTTTAGTTAATTATTTAAATATTATAATATATAGTAATTTTTTCACATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAAAAGGAAATATGTTTTTCAAAACATATTAATTTTGACGTAAAACTCCCTCGGCAGTGAAAGGTAAGTTTAGGAGGCAGCTTCACCGCCGAATTCACAGAAACGTTTTTTAGGGAGATTTTACGTAATAGTAAGCAGG # Right flank : CCTGAAGTACTAAGGAATCTCGTGATCGCCGTCTCTAGTTTGTAGAGATCCTAATAGATTTCGGTTACACCCAAACTAACCCATATCAAATTGCGGAGGAAGTCGGATAGATGTATAACTAAAAAATTTTTTAATCGAAGTCTTCTTTATTTCTATTTAATATGACTTGTCAGGCTGCTTTAACGGCTCCTGTAACCGGTGTTCCTCCTATACCTGGAAACTTAACAACGCCGGCTCAAATAGCTGAATTTCTTGAGACTCACGTAAACTTTACTGCTATCTATGATTCTTTATGCAAAAACCGCTTGTTGATAACTCTACTTCAAATTCTGCCATTTCTCATACGATAACTTCATCCCATGCTCTCATAACAAGTACAGACATCAACCTAGCCTTGATAGGCGTTGGTATCTCAATCCTGATAGGGGTATTCCTGGTTTACAGGAGGAGGTAATTGTGGGCCGAAATCTTCGCTTTCTACTTCGCCCACTTCGACGACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 1852639-1847630 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGD01000005.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1852638 30 100.0 37 .............................. ATAGGTCTGTGGACCCAGAGGTCCCGGGTTCAATCCC 1852571 30 100.0 37 .............................. ACTCAAACGAATCAGAATTCTGTAAGATTTCCATTGC 1852504 30 100.0 39 .............................. GTCCCTTTTCTCCTCCGACTGAGGTCCTCCACCAGTGGA 1852435 30 100.0 38 .............................. ATTTTCTGCAAGACTAGTTGTAAATGTCTAGTTTGAGC 1852367 30 100.0 35 .............................. CTTTTATCCACCTATAATCCAGCTCAGAAATTATG 1852302 30 100.0 36 .............................. TTCATGTTTTTCCAGGTCAGAAAATGGACCTCAAGA 1852236 30 100.0 37 .............................. ACACAGAGGGCAGAGAGATGTTAGTCGTCTCTCTCTG 1852169 30 100.0 37 .............................. GACATGAACCTTCCCAGTCGATTCATTGCTAGACTGG 1852102 30 100.0 38 .............................. TCGGTCATCCAGAAATGGTGAGGGGGGCTATTCTCTCC 1852034 30 100.0 36 .............................. ACGTAATGAAGGGAAAATTTTCCTTGTCTCAACTAA 1851968 30 100.0 37 .............................. TCTTCTCCGACTTTTTCTGTCGTTGTGTCAAGGTAGA 1851901 30 100.0 37 .............................. CCACACTGCGTCTCTGCTTCTAAATGGAGCCTCATGT 1851834 30 100.0 38 .............................. AAGATCGTCAAATACTCTAAGTATGATTCTGAATAATC 1851766 30 100.0 38 .............................. TAGAAGATTTTATACAAAATCAGTTTTTAGAGGCTAAA 1851698 30 100.0 39 .............................. GACGTAGCAGCATCATTTCTAAGACCAGCTGATGTCGGA 1851629 30 100.0 35 .............................. AAATAAATTCAAGTTCTTTATTGCCTCCTTATATC 1851564 30 100.0 36 .............................. CACAAGAAGAGGATAAGAGGGGAAGAAGGAAAAGAG 1851498 30 100.0 39 .............................. TGAGAACCTTTCCCTCTTCGAGACGTATTGACAAGTTAA 1851429 30 100.0 38 .............................. CAAACATAGACATGATAAGACAGCTCCTCCCAAGCGAT 1851361 30 100.0 37 .............................. CCTCTCTAGCAAATTTCTCCTTATCCATGTCATAGTC 1851294 30 100.0 37 .............................. ATTTTATTTCTTTGTGCTTCTCCAGTCAAACCACAGA 1851227 30 100.0 39 .............................. ACAAAGCGAAAATAATAGAAATAAGTGAAGAGGAACTAA 1851158 30 100.0 41 .............................. TCATGTCTACTTATGAAAAATGGGATAGTATCACCAGAGAT 1851087 30 100.0 37 .............................. GGGAATCCCGTGATCACCTCTAATGGCAAATTCAAAT 1851020 30 100.0 37 .............................. TCGGTCATCCTGAGATGGTGAGGGGGGCTATTCTCTC 1850953 30 100.0 37 .............................. GAAGCTGAAACATAAGCTATACCGTTAGCGTAAGAGA 1850886 30 100.0 37 .............................. GAAAAGTATGGTAAGGAAGAGAGATTTCTAGAATGCT 1850819 30 100.0 36 .............................. ATTCTCCACAGGAGGACCAGTGGACCGCAGAAGCTC 1850753 30 100.0 36 .............................. AGCCATCCTAGTGCTGAGTGGTCTACCGAGTCTCTC 1850687 30 100.0 38 .............................. TCGAAACGATAAAAAGACCGGCATTTTTGGCGTATAAG 1850619 30 100.0 38 .............................. TGCCTTTCCACGGCATTTTCGAATTTTTGGCATTCCTG 1850551 30 100.0 38 .............................. TCCCCATGACCTCTATTTCAATACCGTGAGTGATCACT 1850483 30 100.0 35 .............................. TAATCTCCTCATGGTTGAAGATAGACGCGGAAGCC 1850418 30 100.0 38 .............................. GACGCCTTGTATGACCGTTTTTTGGTCAGGTACTTCGT 1850350 30 100.0 38 .............................. GTTTCTATCAACCTGGTAGTTTCGTCTACATCTTTCGA 1850282 30 100.0 44 .............................. TAGCCACCCTAAGAGGGAAACCCTGGGCGGGACGGACGCCCAGG 1850208 30 100.0 37 .............................. TAAATGCCAGACAAGTTGTCATATTCCATTTTCTTCA 1850141 30 100.0 37 .............................. CTTCCCGTGGGAACCATCACGGGATCCAGTGCCATAG 1850074 30 100.0 36 .............................. TATCCTATAACGCAACCACAGAACACCACGGGACTG 1850008 30 100.0 37 .............................. AGGAATTACAAATTATGCCTTATATGTGTGTACGTTA 1849941 30 100.0 35 .............................. ATGGACCAGATGTACCGAGTAACGTAGACCAGTTT 1849876 30 100.0 38 .............................. GAATGGTTTTCTGGCGTCAACGTCATGTGGCACTTCAT 1849808 30 100.0 37 .............................. CCACTCTTCTCCTCACTTCTCACTTCTTCTTCTCACA 1849741 30 100.0 38 .............................. ACACTGTAAAAATGACAGTGATACGCCCTGTCACGGGC 1849673 30 100.0 37 .............................. TCAATATTCATCATGATATATCCTTCTTTTTCATCCG 1849606 30 100.0 36 .............................. TTTTTTGGTTTTGGATGTTTTGGGTGTTCATTTTTA 1849540 30 100.0 38 .............................. TTGTACTCCTAGCGTGAGAAGTTAGTGGATTCGTTTGT 1849472 30 100.0 36 .............................. AGATTTTTTTCTGCCCACGTTCCCCGCGGATTTCCG 1849406 30 100.0 38 .............................. AATGCCTAAAAGAGTGGGGCCTTTAATAGCCTATTCGA 1849338 30 100.0 36 .............................. GCCTGGAATCGAATATAATGGGTGGTAGGAATGTAT 1849272 30 100.0 37 .............................. ATTCTGTGATAATTCCAATGGGGAAGAGAAGTAGTAA 1849205 30 100.0 36 .............................. AAAATGACAGGGTTCGGGGCATTATGGGAACCCGAA 1849139 30 100.0 38 .............................. GTTGAGCCGAAAAGATATACCTCGTTTTTTCATTTTTC 1849071 30 100.0 35 .............................. TGGCTCACACACGGAAAACGGATGGGCTGAAATAT 1849006 30 100.0 36 .............................. TGATAATGGGACCTGGCATAGGTACAGCATCACACC 1848940 30 100.0 39 .............................. ATCAAGCCGAACGCCAGTGGTATAAACGCTATGTAGAAT 1848871 30 100.0 38 .............................. AAAAACTTTTCTATCTTTAGTAATACTTCTTCTTTTTC 1848803 30 100.0 36 .............................. CCATCGCTAAGGGCAAGATAACAGAAGGGGTAGAAT 1848737 30 100.0 38 .............................. TAATCAAAGTTGTCCGCCAATTAAACCACCTAGAGTTG 1848669 30 100.0 38 .............................. ACTTTGACCGGAGGACTCTCACCCTTCGTAGAGTCCTT 1848601 30 100.0 36 .............................. GATGAAGTCATAGATGTAAATGAAGAAGAGCCAATT 1848535 30 100.0 38 .............................. CAAGTCCTTCTAGGACTTCTTCAAAATATTTACCTAGA 1848467 30 100.0 36 .............................. ACGCGGGAAAGGTAGCAAAGGGAGATGTCATTAAAC 1848401 30 100.0 36 .............................. TCGAGACTATCGACGTCAAGATACCCCAAACTTTCC 1848335 30 100.0 38 .............................. TTTCCTTTCACGACTGAAAGTAGCTTCATCTTGATTAT 1848267 30 100.0 38 .............................. AATTCCTCATGATGAAGGAATATGGGCTCAGAGCGAGG 1848199 30 100.0 40 .............................. TAGGCAACGAAACACCGTTTATTGTGTATTTTGTCGTAGT 1848129 30 100.0 38 .............................. ACACTGTAAAAATGACAGTGATACGCCCTGTCACGGGC 1848061 30 100.0 36 .............................. GATGAAGTCATAGATGTAAATGAAGAAGAGCCAATT 1847995 30 100.0 37 .............................. AAACCGTCTTCAGTTTGCCTAATTACCGTTTTCTTCT 1847928 30 100.0 38 .............................. TAAGGAAATAGCAGACGATTTAGCCAAAGCCTACAAAA 1847860 30 100.0 37 .............................. AAGTATCATATCTTCCCCCTCCATCATTACCAATCAC 1847793 30 100.0 38 .............................. CGACGAGTGGGAAAGGGGCGTCATTTGCGACGACCTGA 1847725 30 100.0 36 .............................. AACTCAGTCCCGTTGTCTATTTGTCCATATGTAAAT 1847659 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 75 30 100.0 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : CTCGCCCTTTAGGGCGGGGAGGAAGTCAGTGAAAACTGTCTATGTATAACCGTGTAATCCTTAGTCTACCTTGGTTCAGAAGGAGTATTTGTAGCGCAGGATTTCCCGTTAAATCTCTTGATTCGAATAAGGAGAATAATATTGATGTAGAGAAAATCCATGCTCAGTGTATCAAACAAGTGGCTACATCCTTTGATATTAAACAGGTTCAAGCATAAGAGTCTTCTACAAAATTGAGCAACTTCCCTCGTCAGAGAGAAATGTTTAGGTTTATCAACATGGTGAAAATTTTGATGTATTTTTATATTTATTAAAATTTTTTCACATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAAAAGGAAATATGTTTTTCAAAACATATTAATTTTGACGTAAAACTCCCTCGGCAGTGAAAGGTAAGTTTAGGAGGCAGCTTCACTGCCGAATTCACAGAAACGTTTTTTAGGGAGATTTTACGTAATAGTAAGCAGG # Right flank : ACTGCACGGGGGTAAAGGGGGTAGAAGTCCCCTCCCGTAAGGGCGGGGTAGTTTACAAGAGAATGCTAAGATCAGGATGAGTCGGAACAACACCCTCTTTTTATCTATTTCATTCTACAAACGTTCTCTGTTTCCCATCAGCTAGGTTTTCATCATCTCAACTAACTTTATCTTCTAGTTTTGTCGAATTTCACTTGTTTGTTGAGAATATATTTTGTTTATTTGTAATAGTTATGAAACTTCTCATCTCTTCAATTCTTATCACTATCTGTTTCTTCTGACTTTCCCGCTTCAGTAGACCAAAATTGCTTTAGAAGAATAGTTTTGTTGGACATGCTATTCTATCTTAATGAGATTAAGGGAAGTGAAGGTTTGCTATTTAACGGTAGACCAGAAATCATCTTCATAAAGGTGAACTTACCTGCCATTATGACGGGACATCTCCACTGTGTATGGAGATTTCCTGCTTTCAAAACTGCCTTAATAATCCTTCACATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //