Array 1 12724-16107 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQV01000048.1 Alicyclobacillus shizuokensis NBRC 103103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 12724 30 100.0 39 .............................. AATGTGTCGTCACTAACAACTAGTGTCCCTTCGCCGTTA 12793 30 100.0 35 .............................. TCCAACTCAAGGGCCAGCTCCGGCGCTTGGTCAAG 12858 30 100.0 38 .............................. CCTGTAGTAGGACTGCTTGAGTTCGACTCCCACAAACC 12926 30 100.0 39 .............................. GAGCCAATTGCGGAAGAGGCGGTGCAAACATGAGCGCAC 12995 30 100.0 36 .............................. GCGCGTTGCATTCGCACTGCAAGCTGATGGCTGGTA 13061 30 100.0 38 .............................. CGGTGGAGCTTTTGCACCACCATGTCTACGGCGCGAGG 13129 30 100.0 37 .............................. CGTGTCAACTTGTCCACTTCAACGTCACCACCCATCA 13196 30 100.0 36 .............................. CGAACTGTCTCCAACAACTTTCGTTCATCTGGTGAA 13262 30 100.0 37 .............................. AGGCATGTTACCTAGTGAACGATTGTGACGACGATAC 13329 30 100.0 36 .............................. CCTTTGCCGCAACCTGCGACTGCGCTGCTTCGGCCA 13395 30 100.0 36 .............................. TCCGGATGTCGGACAAAATAGAGCGCGCCAAGCATC 13461 30 100.0 35 .............................. CTGCAGTTCTTGGCGCTCTTCGTACGTCATCTTCA 13526 30 100.0 36 .............................. GAGGGCAGCAATCTCCGACTCTGCGCGGGCCATGCG 13592 30 100.0 36 .............................. ATCTCTTTCTCACTCAACACGCGGCCTCGGTATTCG 13658 30 100.0 38 .............................. GGGTAGACCTCGTAGATGGTGTCCGGCCCTGTCAAGTC 13726 30 100.0 38 .............................. GCCGCGATAGCCGCGTCCGTCGGAGGTGCCTGAGCCTC 13794 30 100.0 40 .............................. AGACTCAGACCCTGATTGCACAGGACGGTGCCATCCGGAA 13864 30 100.0 36 .............................. TGACGGAGCCTTTCGTCAAAAACCCGCTGCGTCAGC 13930 30 100.0 38 .............................. CGATTGGTCAGGCGGACGGATAGGTTGCAAGCGGCTCG 13998 30 100.0 36 .............................. CCGAAGCCCCCAAGTTTCGCAGCCGCAGCCTGGAAC 14064 30 100.0 38 .............................. AAGGTGGATACGATGCGAACGGTAAACGTCTGCAGTAT 14132 30 100.0 37 .............................. TACGCGCTCTTTTCCGGCATACCGGTGTTTGGATGCC 14199 30 100.0 39 .............................. AAATCGTCCATATTGATGCCAAGCGACACGAAAATATCC 14268 30 100.0 38 .............................. CCCGCGGTCTCCATCGTGCCCTGTTGGCGATACACGGC 14336 30 100.0 36 .............................. TCTATCTCTGTAGGTGTAGGGTGGTAGGGTGGAAGG 14402 30 100.0 36 .............................. TCGAGCTAGACCAACGCTACTTCACGGCTAGACTGT 14468 30 100.0 39 .............................. ACGTCGATCCTTCCTTCGTATAGATACCCATCGGCAAAA 14537 30 100.0 39 .............................. CTCCCGATGACCTGATACCACAGATCACCTGTATCAATG 14606 30 100.0 39 .............................. GACATCGACATGGCTATACAGGGGTAACAGCACCCGCAC 14675 30 100.0 36 .............................. TCGACGGAGCGAAGGGGTTCCTAGCCAATGCGGGTG 14741 30 100.0 35 .............................. GTAATGGACCAGTCTTTGCGCCAACTCGGGGTTGT 14806 30 100.0 36 .............................. ACCAGCTCTCGTGCGGTCGATAGAGCGGGCAGGTGA 14872 30 100.0 39 .............................. CTGGACAGCGAAGGCCATCGGATGCGATTGGCATACCTG 14941 30 100.0 35 .............................. GGGGGATAGGGTATGGGACTTCGATTCCGCAAGAG 15006 30 100.0 39 .............................. TAATTCCTGCTCGGTCATGCCCCCTGCGCCTCCTCGCCC 15075 30 100.0 38 .............................. GTGAAATTCCAAGGGCGGATCCGAAGCCTCATACCCTT 15143 30 100.0 36 .............................. TCCGTCGCATTGAACGCGAACACGACGACAAGGGAG 15209 30 100.0 36 .............................. ATTTCGACTACGTACCACCTAAACAGGCGCAACAAT 15275 30 100.0 37 .............................. AAGGCCTGCTTGATGAGCCCGCTGAAGTAGGACACGC 15342 30 100.0 38 .............................. TAGGTTCCACAATGTCGGCCAGGCGCTTTTTCCGTTCG 15410 30 100.0 38 .............................. GTCAACCTGCTCGGCGGCAAGCGAGTCTACCAGATTCG 15478 30 100.0 36 .............................. GTCAGCCGGGAGACCGCAGATAAACTGGAGAAGCTC 15544 30 100.0 36 .............................. ATGCCGTCGCCAAGAGCGTCCAGCTCACGCTTGAAG 15610 30 100.0 38 .............................. TGATGGTAGCGGTGCGCTAGATCGAGCAGTGTCCTGCG 15678 30 100.0 37 .............................. CGAAAGCAATGCAAGAGCCGGTAAGTACAAAGTCAAC 15745 30 100.0 39 .............................. TTCACCAAGAAGGGCGAACTGTACGCCAAGTACGCCCAG 15814 30 100.0 37 .............................. AGGGTAGGGGGTAAGCATACATGCCAGCATCGATAAA 15881 30 100.0 35 .............................. TGCAAGAGTAAACGCCAGCCGTTCCATTTTGGCTC 15946 30 100.0 36 .............................. CCAAGAATCTGCTCCGGCTGCGCCTGATACAGCGTG 16012 30 100.0 36 .............................. GACGACGTCGCAAAGGGCAAGCCGGACAAGCAGACG 16078 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 51 30 100.0 37 GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Left flank : GGTAATATGTGGGGAGGGTGTAAGGTGTTTGTTATCGTTGTGTATGACGTGAATGTGAAAAGAGTATCGAAGGTCTTAAAAACGTGCCGTCGTTACCTTTATTGGGTTCAAAATTCAGTTCTAGAGGGTGAAATTACAAAAGCGGGGTTTGAAGAGCTCAAGCGAAAGTTAGCCGCTATTATCTCACCGGAGGATGATTCGGTTCTATTTTATATATTCCGCTCGACACGTTACACGAGCCGTGAGAGCATGGGCGTCCAGAAGGGCGGAGAGGACCGCTTTCTTTGAAATACGGAAATACGGCCCATACATCTACGTCAGCCATCGCTTGGCCGTCGTCGATCTGCGGTCGCGTCAAAATCCCGAAAGATCGACGACAGCGCGGGAACAATCACATTCGTTGTTACAGCAAGGGTTTTTCGGTATCATGGACCTAGCAGTAACCGCTTCTTACAATTTACCAGCCGTTTGACTTGAGGACACCTATGCGGAAAAAATGG # Right flank : CTGGACCATCATCATGGCATTTCGCGGCATGTGTCAACAGCGGTTTGAAATTCCCCAAAAAAATCGCGGCGGATTCCCCAAAAACATCGGGTTGCATTTCCCCAAAATCATCGCGCAAGATTCCCCAAACACACGTTCGGCTAGTCAGTCATCACCTCCTCTTTAAGGGCATGCGTCACCCCTGCCTTGAGCTTGTCCTTCATCCGGTAACTGTGACCACGGATGTTAATCGTGGTTGCATGGTGGAGTAACCGATCCAGCAGCGCCGAAGCCAGCACCTGGTCCCCAAATAGGGTGCCCCAGTTCGTGAAGCTAGTGTTGGATGTAATGATCATCGAACCATGCTCATACCGTTCGGACACAAGGCGGAAGAAATTCGCCGCGTCCAGGGCGTCGAGCGGCAGGTAACCGACCTCGTCGCAAATCAAGAGTTTTGGCTGTGTGTAGATGCGCAGACGCTTGTCCAATCGTCCCTCGTGATACGCCCTTCGCAAGTCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 18434-20082 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQV01000048.1 Alicyclobacillus shizuokensis NBRC 103103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 18434 30 100.0 36 .............................. GCTGGCGCTCCAGGCTGTCCAGTGTCGTGATCATGG 18500 30 100.0 38 .............................. TCCAACTCAAGGGCCAGCTCCGGCGCTTGGTCAAGCGG 18568 30 100.0 35 .............................. CGCTGGTAGAGTTCATGAAGCTCCGTCAGCACTGC 18633 30 100.0 37 .............................. AGGAGACAAGTAGCCATTTGTCTGTACGTCTGTTACG 18700 30 100.0 39 .............................. CTGATTCGCAATCATCAAATCCTTAAACAACGAGGCTGA 18769 30 100.0 37 .............................. TCGCGATTCTCGTCCATGTCCCGGCGAAAGGACGATC 18836 30 100.0 36 .............................. TACCCTTCATCCATACCGGCATCACCATCTTTCCGC 18902 30 100.0 37 .............................. CCATCATGCACGAGCTGGAGCAGCGTGGATGGAAGAT 18969 30 100.0 39 .............................. TTGGGGGTGGCATTCAAACCGGGGACGGACGATACACGC 19038 30 100.0 36 .............................. TACATGTGCCACAGCCGATACAACCGCCTGTCCAGC 19104 30 100.0 38 .............................. ATGGTATTACCAACATGTCCAACTAACCCAGATCACGG 19172 30 100.0 40 .............................. AAGCTCCTAAACAACTCTTCTAATCCCTCTTCTTTTTCAC 19242 30 100.0 38 .............................. CCTTGACCCAATTGCCCGGGTCCTCGATGTCATCCTCC 19310 30 100.0 38 .............................. ATCCCGCAGGCTCCTAACCCATTCGGGGTGCATCGGCC 19378 30 100.0 38 .............................. CCATCGAACTCTGCGGCCAGTTTGGAAACGATATCAAA 19446 30 100.0 39 .............................. CGTAGTAACCCATCTCAACGAGCTCCCGCCAAACCTGCA 19515 30 100.0 38 .............................. CCAAAACGTATCGCGGCGAACGATTCGGGACGAAAGAC 19583 30 100.0 38 .............................. ACGGCTACGGCAGTATCCTGACGCAAACCGTCACACTC 19651 30 100.0 38 .............................. GCTGAAGTGGAAATTCTTCTGTAGGAAGGAGGTCGGGG 19719 30 100.0 35 .............................. ACAAACTGAGGAGATGAAATCATGGATCCGACACG 19784 30 100.0 39 .............................. CTGCTCGATATGGCACAACGGGAGTAGCCATCGAACCAG 19853 30 100.0 37 .............................. AGCGTATTCAGAGACAGCCTGCCAGTCTCATATAGTT 19920 30 100.0 36 .............................. CTCGCCATGGCTGGTACAACGTCGAGGTGACAAGCA 19986 30 100.0 37 .............................. GTAAAGAAGTCGCCGGAGAGAACTTGGCGATGTATGA 20053 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 38 GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Left flank : CGGTTGCCTTGGCAGAGACAACCGGGCGAAGGGGATGCATGAATTCGCGCAGGACGGTGATTCCGCCGGTATAACCCTGCTCCCGGATCTCTCGGAAGATTCTCTCGGCGTTCAAGACACCGATACGCATGCGCTGCTCGATGTAGGACTTGAAAGGCTCCAGCTTGTAACCCTTGACCTTCTTGCTTCGATTGCGTTTCTCCACATCCGTTTGCTCCTGTTCTTGCTCACGGATCGCCTTGCGAATCGTTTTGCGGTCATGTCCAAATCTTCGGGAGAGCTCCGAAATGCTTACGCCCTCCTCATACAGCTTTCTAATTTCCAATTTCTCACTCTCCCTCATGTCTGGCACCTCCCACCAAATGGTGAACGGTGCCTGATTTTCGACACAGGGTGGGGAATTCATCTCGATGATTTTGGGGAATTTAGTCCGCTGTTTTTGGGGAATCACAATGCGCTGTTTTTGGGGATTTTACATCCGATTTTGACACATGTAAATC # Right flank : TGCCAACGTATTCGGGTCTGTAGCCACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 11533-8836 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQV01000064.1 Alicyclobacillus shizuokensis NBRC 103103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11532 30 100.0 37 .............................. AGTGACATACTGGCTGGGAGGAAAAAGCCGGGACCGA 11465 30 100.0 36 .............................. GTGGAACCGGATTCTGCGTCGACGCTCATCTTCTGA 11399 30 100.0 37 .............................. CGCCTTTCAAGAGAGTCAGACACCGGACCAGGTATAT 11332 30 100.0 38 .............................. CTGTGCAAGGGATTTTCTCCTCTTTCGTCTCCTGTTTG 11264 30 100.0 37 .............................. CTGCCTGAAGGGTTCATGCTCGATGCATCGGACGTGA 11197 30 100.0 36 .............................. TGCTACGTCTGTGCTCCTGCTAGGTGATCTAAACGT 11131 30 100.0 36 .............................. AGGCCGTCGAAGATCATGATCAGGTCCGGGTGCCAC 11065 30 100.0 35 .............................. TTTCTCTCCCCGGTACTCCATCCATCGAGACCATC 11000 30 100.0 38 .............................. TCCAGGCTTCACAGGCTTCAATTGGGGCGCGCAGATTG 10932 30 100.0 38 .............................. ACCAATGCCGGTTCCAGCAATTCACCGGCTGTCCATAA 10864 30 100.0 37 .............................. CTGTGCCGACTGATTGAATGGAACGCCATGGCACCAC 10797 30 100.0 36 .............................. TCCAATCGCTCCTTGTCGTCCATCACTCGCTGCTCC 10731 30 100.0 36 .............................. ACTGGCGATCTGGAGTTCGCCCCTTGGTTCCAAGAA 10665 30 100.0 38 .............................. GTCGACTCGACTGGCGTAATCCAACATGCGCAGTATGC 10597 30 100.0 35 .............................. GATCGAACGTAAATGAGGGGTGATTGGCGTGATCA 10532 30 100.0 37 .............................. TAAAACGGTTTGACCTGTTTCATTTTCAGCAACACCT 10465 30 100.0 39 .............................. CAGAAACTCGCTGATGTCTTCCATACGTCTGTAGATTAT 10396 30 100.0 35 .............................. CTCGAACGCAAGCAACGCCTGACTGACATTGTCGA 10331 30 100.0 38 .............................. CAAGGTATCGTCGAGCAGCAGGCATACACGGATAGCCA 10263 30 100.0 37 .............................. CCCCATCCATCGCCCGATGGTGGCAAGCGGGATCCCC 10196 30 100.0 39 .............................. AGATTCTATGCAAGGGAATCGAATTGGGAAGGTTTCTGG 10127 30 100.0 37 .............................. AGTCAAAGCGTAGGAACACCCATTCAAAGCGTGAAAT 10060 30 100.0 35 .............................. TGTGGAATGTTCGAACCCCACTGACGCCAAATCAC 9995 30 100.0 34 .............................. ACGGACCTCCAATATTACTCATTGCAATAGCCTA 9931 30 100.0 36 .............................. AGATGAGGGAGACGCGCGGATGTTGCCCATGGTGCC 9865 30 100.0 35 .............................. AGTGTAGAGGAGCTTGAAAATTACGAACTTGGTTA 9800 30 100.0 38 .............................. TAGGATATCTTTTCATTCCGATCATCAACTTCAACCCG 9732 30 100.0 35 .............................. TGACCACCGGGCGAGATATACGCGAAGCTGGAGTC 9667 30 100.0 34 .............................. ACAGCTACATTGAATCTCCCGCCTGCAACGCCGC 9603 30 100.0 36 .............................. CAGAATTGTGTGAGCGGGGAGGGGATAAGGATGGAA 9537 30 100.0 36 .............................. ACAGCGGCGTGTTGTACACGCTCCCGTACCGAGCCT 9471 30 100.0 38 .............................. ACCTGACCAACGAGAAGATCCCATGCCACGACGATGTT 9403 30 100.0 36 .............................. AACTTCATCAGCAAGAAAGCCCATGCCAAAGGCATC 9337 30 100.0 38 .............................. CCGTCTTGCTATCGTGGTGATGCTTGCACAGTGGCTGC 9269 30 100.0 36 .............................. CCGAGAGTCGAGCAAAGGCGATCTACAAGAGCGAGG 9203 30 100.0 39 .............................. TATGGAGCTCTGACAAGGCCTCATAATATCTAAAGCATA 9134 30 100.0 36 .............................. ATGGCCTGAAGGATAAGCTCGGCCCCGTGGAGCAAA 9068 30 100.0 38 .............................. GTCCCGAATAACGTCTCCGGCCGCAGATACTGGGACAG 9000 30 100.0 36 .............................. TGGAGTACGGCTAAGGATTTGCTGAAGCATTTGTTC 8934 30 100.0 39 .............................. GAACCGAATCATAACCGTCCCGCGCCAATCCTGCACCAT 8865 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.9 37 GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Left flank : GGCCGTAGCCACGTAAGTC # Right flank : ACCCGCATAAGAATGGCGAGTTCGAGATACCATTCAGTTGGTTAGACTACCCTTGAGCATTCCTGTAATGAAGTAATTCTGAGTTTGAGGCAACAAACAACTCTTGAACTGAACGACGTCATCGCCGGCATATATATTTCAGTCACCTAGCCGTACAAGAGAGGCCGTGCAGATCGCACGATGGCCGGCAGTGCTGGTATTGGCGCTGGTTTGGTCAGGGAGAGGCTTTTCGCAGCCGTACGCAGCCAAACGCTGTTGCACATGCTTCCGGCAGGAGGAGTGGGCAGGCTACTAGGCGAAAGAGTAAAAAGAGGATGGGATTCATCCTTGGGCTGAGTTCCTCCGAGCTCGACAAGCATGGTAAGGGTCCAAGAGAATCCGCCCCAAACCTGGGAAGGAGGCAGCAACCGTGTCTGTATACGATTTCACCGTCGAACGGATCGACGGGACGCCGCAGTCGCTGTCGGACTATCGCGGCAAGGTGCTGCTCATTGTCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //