Array 1 162515-163337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRAL01000057.1 Salmonella enterica subsp. enterica serovar Mississippi strain GSB13 GSB13B_S9_29770_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162515 29 100.0 33 ............................. CCATTCGCCCCGCCCCTGTGTGAACGGGCAGGA 162577 29 100.0 32 ............................. GGCGCGCCGATTAGCACATATTATTTAGATAC 162638 29 100.0 32 ............................. TCCGGGCGGTAGTTCGGGGATCTTTCGCGGGG 162699 29 100.0 32 ............................. CCTGATCTCGGTGATCCCCAGCCCTTTTTTCA 162760 29 96.6 32 ............................A GAGTTGCAGCATTTTGAAGCCGGTAAAAGCTG 162821 29 100.0 32 ............................. GTCATCGGCGGTTACATCCTCAATTGAGCGAG 162882 29 100.0 33 ............................. CTGTTCAGCATTGGGCTAAGGGCGGGAGCCGGC 162944 29 100.0 32 ............................. GTGACGGGAACCGAAAACGCGCAGGATGTAAT 163005 29 100.0 32 ............................. AACCTGTTTTTCACCCAGGCCATTCTGCAAAA 163066 29 100.0 32 ............................. CGCTTTTCCAACGGTCGCGGCTTCTGGTGTCT 163127 29 100.0 32 ............................. AACGCAGATCACAGCTATTGAGGGAATTATGA 163188 29 100.0 32 ............................. CCAATTGCTGTCACATATTCACCCCTTTTCCA 163249 29 100.0 32 ............................. TCGGCTCAAAAATCCGCGCCTCGCGTGAGATG 163310 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTGCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179892-180592 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRAL01000057.1 Salmonella enterica subsp. enterica serovar Mississippi strain GSB13 GSB13B_S9_29770_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179892 29 100.0 32 ............................. CCAGGCTGGTACCGTGCGCCATAAAGACGCCT 179953 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 180014 29 100.0 32 ............................. CGGAATCAAGTTTTACTCGCTGGCTGAGGGCG 180075 29 100.0 32 ............................. TATATCTCCCGGAGCATGGCCGCAGCGAGGCC 180136 29 100.0 32 ............................. GTTACGTTCACATTACACGTGCCTCCGGAGGC 180197 29 100.0 32 ............................. CTGACCGCCGAAACAGTTGTCCGCGCCTTCGC 180258 29 100.0 32 ............................. CCAATCGGAGAACCATCGGGATAAATCATGTG 180319 29 100.0 32 ............................. GCGATGGGCGCTGCTGGTGTTGTGACGACAAT 180380 29 96.6 32 ..................A.......... AGAGGCAGCAGCGTATATCCGTGGCTACGTTC 180441 29 100.0 32 ............................. CATAAACTCGCCGATCCTCAGAATGAGCGCCT 180502 29 96.6 32 ............T................ AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 180563 29 89.7 0 A...........T......A......... | A [180589] ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGTGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGATTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGTGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGCCCCGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTGTTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //