Array 1 80621-77908 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCJ01000022.1 Moraxella catarrhalis strain 5560626Q 5560626Q_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80620 28 100.0 32 ............................ GTCAGTAACCTGACTAGTACTTTTATAGTAAT 80560 28 100.0 32 ............................ TTGTCCTTATCTGATTACTGCTGGCATCTATT 80500 28 100.0 32 ............................ TGAGTATTTTTTCATCATTCTTCAATCTCCGT 80440 28 100.0 32 ............................ TTCAAAATAAAAGTTGCCCTTGCCACGCTCAA 80380 28 100.0 32 ............................ TGATGATCTGATGTGGAAAACAATGGATAACT 80320 28 100.0 32 ............................ AGCCAACCATAAAACTCAATCAACCAACTACA 80260 28 100.0 32 ............................ GTTTTTTCACCAATGCCAAACATTGCTTTAAG 80200 28 100.0 32 ............................ AAAGGTACAGGCGGTAACGCTGGAAAAAAATT 80140 28 100.0 32 ............................ TTTTGTCTTGCCGTCTATATGTATAATTATAT 80080 28 100.0 32 ............................ TTGCTAAGCTTGAAAAAGAATTTGGGCGCTTT 80020 28 100.0 32 ............................ CTGCATACACACCTGTGATTTCAATGCTGTTT 79960 28 100.0 32 ............................ TAAGTGCTGAATTAGAGCGTTATGCGTTAAAA 79900 28 100.0 32 ............................ TGTGTGATTGTCTGTTTAACACACCAGTGATA 79840 28 100.0 32 ............................ AATTCGCCCGTTTGGAGTGTAAAATTGCTTTC 79780 28 100.0 33 ............................ GCTTACAGAGCTTTCAACAGTATTAATCCGTCT 79719 28 100.0 32 ............................ TCTGTAAGCGGTAATACTTCAAGTATTAATAC 79659 28 100.0 33 ............................ AATTTCACCGAGATAGAGGTTAGCCCTGATGGA 79598 28 100.0 32 ............................ CAAGGCTTTGGCGGTATGCTGTGGCAGTACAC 79538 28 100.0 32 ............................ AAGGTTATCAGCGGTCGCACCGCATTGACTTG 79478 28 100.0 32 ............................ ATCACCAATTGGCAATGAAAACCCATTTTTCT 79418 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 79358 28 100.0 32 ............................ AGTTTACGAGCGTATTTAAGAGCTTTCTAAGC 79298 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 79238 28 100.0 32 ............................ GTATTTCGTGTTTACCTCTCCAAAAATTGAGC 79178 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 79118 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 79058 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 78998 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 78938 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 78878 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 78818 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 78758 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 78698 28 100.0 0 ............................ - Deletion [78671] 78670 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 78618 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 78558 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 78498 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 78438 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 78378 28 85.7 0 .......................CTTC. - Deletion [78351] 78350 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 78295 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 78235 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 78175 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 78115 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 78055 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 77995 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 77935 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 47 28 98.4 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATCTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //