Array 1 108601-107046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQVX01000002.1 Salmonella enterica subsp. enterica serovar Orion strain CRJJGF_00093 SQ0141Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108600 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 108539 29 100.0 32 ............................. ATGAGCTTATCCGCGTGATCGGATTCATCAGC 108478 29 100.0 32 ............................. CATCTGGCCTGTAGTTCGGGCCGTGTAAGATG 108417 29 100.0 32 ............................. CGATCGGTAATTCTATGGCCGTGCCGGTGATG 108356 29 100.0 32 ............................. GGCGCGTTTTGTCGTCTTTTGCCGCCATTGCA 108295 29 100.0 32 ............................. GCGATCCTGGGGAAAGAATAGCCCCAGGTGCT 108234 29 100.0 32 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTG 108173 29 100.0 32 ............................. CACTGCTAACACCGCTATTGCTGTGATAAATA 108112 29 100.0 32 ............................. ATGCCCGGGAGGAATACTACTGCGAGCCGAAG 108051 29 100.0 32 ............................. ACCAGTTTAGTCGCGGGTGCAGCAACTCATTT 107990 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGAAATGTTAATA 107929 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 107868 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 107807 29 100.0 32 ............................. CGGATCATATAGGTGAGAATTTCTTCTTTTTT 107746 29 96.6 32 ............................T CAATCCTCGCCCCATTCATCGCAGTACGCATC 107685 29 100.0 32 ............................. AGAAAATCGACAACATGACGGACGCCGACTAC 107624 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 107563 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 107502 29 100.0 32 ............................. CAAACATGACAGTAAAACGCCGGATTGATGTT 107441 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 107380 29 100.0 32 ............................. GACCAGATTAAAAAAACGGGCTGGACATGGGG 107319 29 100.0 32 ............................. TCTGGCAGTTGCGACAATAACTATGTGTATTA 107258 29 100.0 32 ............................. CTGGCATAGTCTTTTGCAATAGCGATAGCAGT 107197 29 100.0 32 ............................. CAGCTGCGGTCCGGCGTTATCGTCAGACCAGC 107136 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107075 29 96.6 0 ............T................ | A [107048] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127103-125488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQVX01000002.1 Salmonella enterica subsp. enterica serovar Orion strain CRJJGF_00093 SQ0141Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127102 29 100.0 32 ............................. ATGATTCTTTAGCCATTAATCACTGAGAAGGT 127041 29 100.0 32 ............................. ATGTGTCCGCAATTGAGCGTTTCTCGGCTGAT 126980 29 96.6 32 ............................T ACATCATTCAGCCCCTTGCACAACGCAATGGC 126919 29 96.6 32 ............................A ACCATTTAACTCACTGGATTTCGTGTACAGCC 126858 29 100.0 32 ............................. ATAACCAATTTGTTGGATATCGTAAGGATGAG 126797 29 100.0 32 ............................. TGCAGGGTTTGGGGGTACGATGGTGCAGAGGC 126736 29 100.0 32 ............................. AAAACCAAAAGGATTAACTTGCGTTTAATTCA 126675 29 100.0 32 ............................. TGTGGCGTTACGTTCGTCATTTGTAGTCACTG 126614 29 100.0 32 ............................. CATCGTGACGTTTGAATTTGTTAATGACAAAA 126553 29 100.0 32 ............................. TGACGGCAGTCAGGGCTAAACCAGGCCAGACC 126492 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 126431 29 100.0 32 ............................. GCCTGGCTGGACAGCGAACTAAACACAGAAGA 126370 29 100.0 32 ............................. AATGGAAAATCTGCAATAGCGGCGGCCGTTGG 126309 29 100.0 32 ............................. CGCTGGCTAGGAAAATCCGTATTGCTCACCGG 126248 29 100.0 32 ............................. CGCCTGTCTATGAATGGCAAGGAAACGCAGCG 126187 29 100.0 32 ............................. TGTTTGAGGTCGATCAGGCCCAGCTTCAGATC 126126 29 100.0 32 ............................. CCACGGCAATGGCACCGGCCACTAACACCCCA 126065 29 100.0 32 ............................. ATCTGCAACCAGGCGGCACGCGCTTAATTTTC 126004 29 100.0 32 ............................. CGGCTTTTTTTGTGCCCGCGATTTGTCGTGGG 125943 29 100.0 32 ............................. GGTAAGCAAAATGGGCTTGTGACCTGGAATGA 125882 29 100.0 33 ............................. ACGCTTTAATCGATTTCTGAACGCGGCGCAGGC 125820 29 100.0 32 ............................. ACGCGAAACCTGAACCATTCAGATTGGACAAA 125759 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125698 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125637 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125576 29 96.6 32 .......................T..... GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125515 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATAAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGCTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //