Array 1 1114860-1115783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000002.1 Tolypothrix campylonemoides VB511288 scaffold_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1114860 37 73.0 36 ....T........C.T.T.CG......TTG...T... CATGCCCATTTAAACAACAGAATCAAGACAGCTTGT 1114933 37 94.6 37 .............................G....G.. ATCGCAACCAGAATCAGCCTTTCTCTAATGAAGGGAG 1115007 37 97.3 36 .............................G....... TCCCTCCAATCCCTAGACCTCCAGCTACGACTAATG 1115080 37 100.0 37 ..................................... AATCAAAAGGAATCCTCTTGATGCTTTCGATGGAAAA 1115154 37 100.0 36 ..................................... GTAAGTGATTTGTATCACTTAAGTAAGACTGTGTTT 1115227 37 100.0 37 ..................................... ACCTAGAGGAATGATCGGTAAATATGGACAGATGACA 1115301 37 100.0 36 ..................................... TCATACCAGTAACGTATATATGATCCTCCATCTTTA 1115374 37 100.0 36 ..................................... TGAACAACAGGCGATCGCATGGGAGGAAGCTGTTAA 1115447 37 100.0 37 ..................................... GTTGACGGCGCAAGAGGAAGAGGTGATTCGTAGCAAA 1115521 37 100.0 40 ..................................... CCGACCGACCTACTAAATCCAGTGAGCCAATAGATTTACT 1115598 37 100.0 37 ..................................... CCCTTGGTAATACGTTCGTACTGATAATAAAGTGATT 1115672 37 100.0 38 ..................................... GTTAATTCTGATAACACGTTATTGCTTTCGCTTTTAAT 1115747 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 97.3 37 CTTTCAACCCGCCTCAAGCTAGGAGGGGCATTGAAAC # Left flank : GATTATCAGAAGATAATTTTCCCTCAAAGGCAAGTTCAAAGCTTTCCGGTGGAATTTGAGTTGGTTCCTTTTTTCGGTACATCGTTACTTAAGCTACTAAGTATACCAGGAGCTTACGGTGATGCAAGGGTTTCAGAGTATTATAGCCTTTTTTCTTGCACTTGAATACATATCTCTGCTCTAAAAATCATAGAATGCTGCCTTTTCTTTCTTTTTCAGCAAGCCCTAACTAATTATTTGTCACTGTTAACAGATTGATGTCACTTTTAAACAGTTAATGTCACTGTTAACAGAATAATTGTCACTTCACCTGGCTTGCACAGTTATCGACAAATAATTACTAGTTTTCTAGTTTTAACGAATTAAATGTCAACATTGCTGAGTTCATTTTATAATTCTACTTTCAACGAAGAAGATTGAACTCGTGACCTCTTTCAACCCACCTATATTTAAAGAATATATTGGAATTTTGAGCCTAGCTTGCGGAACATAGTAATGCT # Right flank : CTGTGCGCTTCAAACCCCTGATTTGTCAAAATTTCCGGAGGCATTTTTGTCAAGGCTGCCAAAATCGCCTGTCAGTCAACACTTAAAAAAGTAAATCAACTGAAACTTCAAAGGCTAGAAATCTCGCTAAACAAGAGATTTAAAACTTTGGCATGGCTCCCGGTAAAATCGCTCCCGCTTTGGCTTGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGCTCGGAGGTGATTCAGTAGCCGCCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTGATTCCTATCCATAAGGGATAGCAGCTTCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTGACAACAGTCAAACTAACCCACATTTATCATTGTTCAGAGGCGTATTTACGCATGAACAACGGCGCTGTTGATTACTTATTTTATTTTCAAGGTTCGGAAGAAAGTTTGTGTATTAAGAATTTTTACGAGAGTGATAAGCTGCGATCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTAGGAGGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 220026-220359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000001.1 Tolypothrix campylonemoides VB511288 scaffold_000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 220026 36 100.0 40 .................................... TTGAGGTGCATCAATTAGTGTTGCTAATCCAATGCAAAGT 220102 36 100.0 37 .................................... GTTCTGATTTCCTCCATTTTGGGTTGACGACGTTGAA 220175 36 100.0 37 .................................... CCTATATAATTCACATCTTTCGTGTAAGCAGAACCGG 220248 36 97.2 40 .............A...................... TTTCTAGAAACTACAGGCTATCTGCCTGCACCTCTTTCAT 220324 36 80.6 0 ............................T.ACTCCT | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 95.6 39 CTTTACAAACCCTCTTCCCCTAACGGGGATGGAAAC # Left flank : AAATTTCTGCTTCCAACGGACCTACGGACAGTTGTTTAGGGCGATAGTTAGGTAAAGGTGCCATATCAATTTAGAATAAGGGGTGATGAGTTGTACATATGCATTGTGTAGCCTCAGTTTGGTAGTGCAGCGAGTGAACGCCAAACACAGCTTTTTCAAGTCTGTTCTTTTCTCAGATTACACGTTCATTGAAAATTACTGTGTTAATAGAAGAAATATTGAATAATTTTCTCTAGCAAACACTCAATTAAGTTTTGGTATAAAAACTTGACATTGTAAATAATGAATTCTATTTTTAAAGCAGTGTGTTGACATCCATCGACACACCTCGCCCGAACCTCGAAAACCGCATAATTCCGTTGGACTGTGTCGATACCTTATCCAGTAAGCTTTTCAGACGCCAAAATCATTTTGTTTTTGAAAGAGTTTAATCACTTTTTAGGGGTGTGTCGATTTGGGGGTCTGAGAGCCGCTCCCAGCAAGGTTTCCAAAAGTGAACT # Right flank : TATCCCACCCAAAGAATATCGAATTAAATAAACCGCCAAGACGCCAAGGACGCCAAGAAAAAGATAGGTAATCTTGTAGCGGGAAGGGAGTAGTGCTCTTCTTTGCGACTTTGCAACGCCAGTCGCTGTGAGTTCGGGAAACCCTCCTGCAGCGCTGGCTCGTCTTTGCGCGAGATAAAAAAGTCTATTTACTTGAAAATAGCTGTAAAAACGTAACAAATGCACCTCTCTACATTGTTTTTCGCAGATGTCTAATCTAGTGGACAATTAAGCTGGAAGTTTTGCAATTTTGTTGAGGATTGCTGTGACGCCAGAGGAATTTCGCCGCATAGGTCATCAGTTAATCGATTGGATCGCTGACTATCGCTCCTCAATCGATCAGTTTCCTGTCATGTCTCAAGCCGAACCAGGCTCGATCCGCGCCCACTTCAGCGCCACACCCCCGGAGGTTGGTGAATCTCTCGACGCCAACTTTATCAACGACTTAGAACGCATTATTT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCTCTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 873591-874274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000001.1 Tolypothrix campylonemoides VB511288 scaffold_000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 873591 35 100.0 35 ................................... AGACGTTTGTGCAAAAGCAGATCCTGCTCCAGCAA 873661 35 100.0 38 ................................... CCTAGATGTAATCGAAGAAGCGTTTTGCCTAGCTTGGT 873734 35 100.0 35 ................................... GAAAAAGTGAATAAGATATTCAAGCCAATTTTCTT 873804 35 100.0 37 ................................... ATATATAACTGCGGTTAGTTCTAGGGTACCGTCATCA 873876 35 100.0 39 ................................... ATATCGAGGAATATGGGTTATAACCGATTAGATGCAAAA 873950 35 100.0 39 ................................... TTGGAGACGATTCGACATGAGCAGCTATGTCTCTTAGTC 874024 35 100.0 37 ................................... ATTCCTCTTTTTGTTACATTTTCTTTCTCTACAACAA 874096 35 100.0 37 ................................... ATCTCAAACAGAGCATAAAAACCTTGGTAGAAGATAA 874168 35 100.0 36 ................................... AACTCACTAACCTCACCTACTTTGTATTCACCAAAA 874239 35 94.3 0 ............T.....................T | A [874253] ========== ====== ====== ====== =================================== ======================================= ================== 10 35 99.4 37 GTTTGACTCTTGCTAAAGAGAAAAGGTGCTGAAAC # Left flank : AGCTCTTAGAGGAAGTCGCCCCCAACGACTGGTACTTTAATATTGTCCTGCGGGGCGCTGTCACTTGCGGATTGCCAGAGGAATATTGCTGGAGTTTGTTTAACCATATGTACAAATTGCAACAGCGCCATCAGGCACAAGATTGCGTGCGATCGGCTTAGGAACGACTTGAACTGGGGATTAGGGATTGGGGATTAGGGATTGGGAAGAGTATTGCCCAGTACCCAGTCCCCAGAGTAATTAAAGAATAATGTCCAATTGGAAGTAAGCGACATTTGGAGTGTTTTCCTGTTTCTTTGTGATATTTTATGGGGCATATAGGGAATCGCTCAAACCCTTATTCTGTCGTTGTATCCCGCAAATGCCTGTCCTGGTAAGGATTTGAAGTGTCCGTGGTGTTGATTTATTGAGAATTTTTATGAATTATTTGCTCTTAAATTTGACACCCACAAATTGGGGGGTGTAAAATGCTCTTACCACAAGGTTTGTAGAAGCCAAGG # Right flank : TTTGTCACTCTCTTCAGCACCAAAGCCTTTTATCAAGATTTGACCATTCTTAATCAGCAAAACTATCAACTAAAACGCTTTATTTAGAACTAGTTGTTCTAATATTTAAACCTTTTCAGTTAATAGGGAAAAATCATGTTGCCGTTACCAGAAACATTACCTAAGTGGTACACAGTTGAAGACACTCAAGAAAGAGGATGGACACCTGAAACTAAAGATATTATTGAAGGCAGTGGCAAGCCAGAGGTTATTAAGGCTTGGAAGAATGACCTGAATCTACAAAACTCGAAAAAATTCACTGTTCGGCTTGATAGATTGCAAATTATTAGTCCCATTCAGGTGGGAGGTGGCAGTGTTTTTGAAGGCGGTATATTACCCGCTCAAATCGGTGGTGTTCCCTGCATTCCTGGTTCAAGCATTAGAGGTGCTTTACTAAAGTGGATAAAAGCGAAATGGGAAGGTTTACTAAGCAATGAAAGGGATTTTTGGCAAAGTTTAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACTCTTGCTAAAGAGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1378095-1376666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000001.1 Tolypothrix campylonemoides VB511288 scaffold_000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1378094 37 100.0 36 ..................................... GCATTGACGACTTTGACGAGCATCCATTGGAAGCAG 1378021 37 100.0 37 ..................................... GGAAGAAGAAGAACACTAGAGTATTCCCATTCAACCA 1377947 37 100.0 39 ..................................... TATCTCTTCTAAAAGCGGTTCGCAAGACAAGAAACGTGT 1377871 37 100.0 35 ..................................... TTTCATGACGTTTTCTATCTACTGGCAATGCCAGG 1377799 37 100.0 36 ..................................... TAACCAGTTCATAGCCACAGTTACCAAAGCAGGATT 1377726 37 100.0 34 ..................................... TACAAAATCAAAGTGTGGTGCTTCATGAGGACGA 1377655 37 100.0 39 ..................................... GATGCGTTTTTGTTGGGGGGCAACCAAAGATAAGTTAAA 1377579 37 100.0 46 ..................................... GGTTACGGAGTTTGGCTCAACCTTTCAATCCCTAACAGGCGATAAA 1377496 37 100.0 36 ..................................... CTCTGGTGAGTTGAGGGGATAGGAATTATAAAGGAA 1377423 37 100.0 35 ..................................... TGTTGGTGAACAAACAAGGAACGGAATAATTAAAA 1377351 37 100.0 36 ..................................... GTGAATCAGACGGCTTTATGGCATCCATTATTTTTC 1377278 37 100.0 33 ..................................... AGCAATAATAGGTATAGGAGTATCTAATGGGCG 1377208 37 100.0 38 ..................................... GACAATCCTCTATTAACTGTGTGATACTTAATAAAGTA 1377133 37 100.0 34 ..................................... GTTCCTCCAGAAGCGGCGCGTGTTGCTACCTGGA 1377062 37 100.0 34 ..................................... GAACTATTTCAAGAAATCTTGCTTTATTGTAAGA 1376991 37 100.0 35 ..................................... GCGAAGACATGATTGGGGTATTTTGCCAGAATTCG 1376919 37 100.0 35 ..................................... AAATATAATCTGATACTTCTCTGTAAAGCTATAAA 1376847 37 100.0 37 ..................................... TTTTCGCTGGCGGCGCGTGGGTCGCCACACAAGAAAA 1376773 37 100.0 34 ..................................... GCTGGTTACTTCATTTGGGATAGCTGGCAGAAAG 1376702 37 91.9 0 ............T.A........T............. | ========== ====== ====== ====== ===================================== ============================================== ================== 20 37 99.6 36 GTTGAAATTTCACTTACTCCCTACTAGGGATTGAAAC # Left flank : CTGGCTTATTCTTTCTCTAACTGCCTATCTTATCACTCATTGGACTTATCTTCAGACTCAGTTACCATTACCACCTGATTGGGGTGAGGCTGCCCAAACTGCCCTTGAATCTATTTTTCCTCAATTCGCACTGTCTCTTCTTTTACTTGATATTGAGCGATTGATTCCCCTTGCACGTAGTTCTGGTTTTGACATCCATATTTCCAGGTGCAAGATGTGAGAATAAAAATAATGTAGCTTTATTGCACATATTTTTGGTTTGTACGGTTTTCTACGGATAGGTGCAAGATGTGAGTAAAGAGGTTTTGAAAAAAATGGCTGAATTTCCCACACTGCAAGGCTTTAAGGGAATAGACTTTGACAAAGTATCCGCGCAGCCTGTCCAGACTGGGTTTCAGCCATTTGTATCTTGAACAACCAACATTTCGCATGCTATGATTACTCTATCCGCGCTCAAGAACCTTGAAAATCTTATATATGTTAGTTTTCAGGCTTCCGCA # Right flank : TGCTTGATCTTACGGCGACGAGATGGAGAAAACAGGTTGAAATTTCATTAACTCCCTATCCTCCATTTTTATCTCTGGAGGGGATTTTATGGCACAAAGCGATCGCCTGAATCAATAACTAGCAACTTGGGTTAGATAGGAAAATTAATTCGATATTAATATACTTTTGAAATAGATTTTTCGGTCGTTCCGTATAGCAAATAAGGGCTTGACAAAACCAAGAAAGAAATAATATATGTAGTTTGTAACAATATACGTTATTGTAATAATTGTGACATTGTTGATTAAACCAACATCGCAAGCTTGACCAATCTTTAGATCGGAATAAAGCTTGCCCCATTGTTCTTTTTTTCCCAAAACAGGAGAATAATATGCTTTTCGCTAGGCAATTACTGTTAAGTACTTTGTCACTGTTGTTAATTGGTTCGACTAGTTTTCCACAAAAAAGTTTAGCAAATTCTCAACAATCAGCAGAGCCTTCACAAATCCTTTCTACTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 1687132-1688240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000001.1 Tolypothrix campylonemoides VB511288 scaffold_000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1687132 35 100.0 42 ................................... GTGAAGTTCTGTTTCCTGAGCAGCTCCCAGCCACAGAAAAAA 1687209 35 100.0 35 ................................... CTTTTAAAGATTCTCTACCCCTTCCATAAGTGATA 1687279 35 100.0 37 ................................... CAATATTAAGACAAAACGAGGAGGAAGCTAGAAAAAG 1687351 35 100.0 37 ................................... TGTATGACTCCCTTCATCGAAGAAAGTGACCTACTTG 1687423 35 100.0 35 ................................... CGGAAGAGCTTACCGTTCTCTAATTCTTCTATAAA 1687493 35 100.0 36 ................................... CTCTACGTAGAGCTAGGTTGGGTACCTCCTCAAGCT 1687564 35 100.0 36 ................................... CTTTCTGGAAAACTCCTATAAGGCCCACAACCCACG 1687635 35 100.0 37 ................................... ACAAACGTTCTAGGTAGATTAGTAGATTAGTCGCTTC 1687707 35 100.0 34 ................................... TGCTTATCCAAAAGTTTAGCATAGGTTGGATTGT 1687776 35 100.0 39 ................................... TCTATGAGTTTAGTGTCGGGGAGTATAACCCTGACAAGG 1687850 35 100.0 36 ................................... TCTGTCACGGGCAACGTCGTCGGACGAACCTACAAC 1687921 35 100.0 39 ................................... GATTTCGCCTTGCAAGCCATCCTAGACCGGGTAGATATG 1687995 35 100.0 34 ................................... GTCCAAGGACTGAATTACAATCTACCGATTCTTG 1688064 35 100.0 36 ................................... AACTATTGGTTTAATTGGACTTAGCTTTGCTGGAGC 1688135 35 100.0 36 ................................... CTTACTATCGACAAAGATGGTAACAGCTCTTCTACT 1688206 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 16 35 100.0 37 GTTTCCGTCCCCTTGCGGGGAGATGAAATGAAAAC # Left flank : GAAAATAACGATGATGAAGACGCTAGCTTATTAGTTAGTAGAGCAGATAGACTTTTTGAAGAAGCTGAAAACTTGAACCAAGTAATTTCAGAACTGGAGGAACAATGAAGACAATCGAAGATTTAAGGACTCGTATTAAAGAACTCAGTAAACAAGCTGTGGAACTAAGACGAAAAGCATCTGAGGTTTATGAAATAAACAAGGAGCAAGCAAAGGATTTTAGGGAACAGGCAAGAGAAGCCCTGAAACGATGTGAAGTATTGAGACAAGAAATTAAACGTCAACAAGCAAGTTAAAAACTGGCGCTTCCTTGAGAAGTGCCAGTTTTTAACTCGAAATATGGAATCCAACAAATAAATTATCCCCTAACAGTGGGGTGGGCATCTGGTTCTCCCAGTTTCTGTGGGGTGAGAGCCCATCCCACAAGAAAAAGTTGGATATTTTTTAATTTGGAAGCCTCTATGCTTCTTTTTTCTCTCTTCTATTTTCAGTCTTTCTAG # Right flank : CCCTACCTTCTAGAACCCTTACCAAAACTGGCTTTCAAACGACAATTTTGTGGGATATCACTTTTCCTATCAATTATTAGAAATGAGTGGCAATAACCAACCAGGTCAACTGCCTCAAACGCTTACAGTGTAAGCTATTTGCGGGATACAACGAAATAATCAGGGTTTCAGCCCACGAGCGTATCCCACAAAATTTGTGCGCTGTATTCACTTTTCAAGGTTCTGAATGCATCAATAAACACACTCCTTAACAGTAAATCCTACCAGCTTGAATTGTCAAGTTCTTAGAGTCATGACAATCATCGAGTATTTTAATTTTATAGTTCGCCAGCGCAAGCTTTGTTGTGTACACCACGCGTAGGGGCACAGAGTTTTGCTCATACGTGTCTAAGGCAAGAACTTTGTAGTTACGCCATATCACGCCTTTATACTTGCTGACAATTCTCGTTCTACCCCACCCCGGTTTTGTCTAACGCCAAAACCTCCCCTCCCCTTAAGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAGATGAAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 751537-753593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000027.1 Tolypothrix campylonemoides VB511288 scaffold_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 751537 37 100.0 34 ..................................... GCAAAATCTATTTCATAATCTTCATTATGATAGA 751608 37 100.0 32 ..................................... AACTCCTTGCTCAAAAAACTCAGCACGCATCT 751677 37 100.0 34 ..................................... TTAGTAATATCAGTGCTTGCCTTGTAAAATCGGA 751748 37 100.0 34 ..................................... TTAAATCGCGTCCAAAGTCATAGCCTGTGTCAGC 751819 37 100.0 34 ..................................... GATGACTGGTTTCTGATGTGGTATTTTGCGGAGA 751890 37 100.0 34 ..................................... CTAGACACTTTTCAGTCTGAATTAAAGGAGAAAA 751961 37 100.0 39 ..................................... GGCAATAATTGGTTGCCCATCAATTTGCCCGTCGCTGGA 752037 37 100.0 35 ..................................... TATTTAATGCAGCTACTGCTGTATCACTTGCAGAG 752109 37 100.0 35 ..................................... CATTAGTTATTGAGTTATATTCTAAACTCTCGGGA 752181 37 100.0 34 ..................................... ACTTTTCTATACTAAAGGCAAGAAAATTTCTTGT 752252 37 100.0 34 ..................................... CAGCAATCGGACGGAAGAAGTATTGAGGAAATTT 752323 37 100.0 33 ..................................... CTGATGGTATTGGTGGTGCTTCTAATGCCCCAA 752393 37 100.0 36 ..................................... AGCTTTTCCCCTGATCGATCATCCCGAGGGACAAGA 752466 37 100.0 36 ..................................... CAATCGTTGGAGCAATCTCTAGCAGCTTCTCAAAGA 752539 37 100.0 38 ..................................... TTACTCAATCTTTGTCCCCAATTAAAATGTTTGTTTGC 752614 37 100.0 35 ..................................... AGAATCAGAAGTTAGAAACCTTGGTGGGTTAAAGA 752686 37 100.0 36 ..................................... ACTCTCACCAATAAAGTTGTAATTACTCCATACTTG 752759 37 100.0 35 ..................................... TTTTATTGCTTGATATAACCCAACGACCAGAGGTA 752831 37 100.0 36 ..................................... GCCACCCCCATTGAGAACAGAGACTTCGCCGCAGAA 752904 37 100.0 36 ..................................... CCTTACGAGAATGGCGTTCATCTTGTCAATCAAGAT 752977 37 100.0 36 ..................................... AAAAGGCATCCGCGCGACCGGAGCAGGAAAAACATA 753050 37 100.0 33 ..................................... ATTACCCAGGAGTTTGTCTGTGGTAGTTTACTA 753120 37 100.0 35 ..................................... GGGTGAGTAGCGGGTTGAGAAACGGTGGGTTGAGG 753192 37 100.0 33 ..................................... TCTCCTTCCGAATGGGAATTTGGGACTAGGTAC 753262 37 100.0 34 ..................................... TTTACAAACCAATGCTGCTCTTTCTATTGCATCT 753333 37 100.0 42 ..................................... TGATTTTGACCCATTAGACCGTGGTTACGAATCAATTACACG 753412 37 100.0 37 ..................................... TGCCATTTGATTACATAGAATCAGATGGAAAGCTGAA 753486 37 100.0 34 ..................................... TGAGTTAAATCAATGATATCTGCCATGCCTGTCG 753557 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 100.0 35 GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Left flank : CAATCAATTAGTCCAACTCTACATTTGAGAGGATATATGCTGCACCGTGAAATTCCAGATTTTTCTGGTCAAAGCAACGCTGGACTTATACCCTGGTTTACGAGTAAAGCAGTCAACAAAGCTAAGTTTTAGATGAACAGTAGATTACCAAAATATCTGGCGACTGAGAAGCTGGTTGCCTTCAATTTCAGAAAAAACACTTTAGAATGGCTGTTATGACAGGTAAAAGCAACCCGACTAGAGATATCTGCTGCGCGGAAGGGTGGGTGTTTGTTTCAACGGAAGTCAAAAAATGGCTGAACAACCCATGACACAAGGCTTTGAAGAGTTCATAACCAAATTTCCATCCGCGCAATCTCTCAAAAGCTTGCCAAATAAAGGTTTTTGCTTGTATGATGAAATAGAATATTTGAAACCTGTGCCCGAAAACGGTATTTTTTTACCGATTCGCGCAACTGAACCTGGAAAACTGAATATAGTAAGCGTTCCATATGCCAGCG # Right flank : CATTATCCTTTGAATCAGCCTCTTCCAAAAGTTAAGAAGAATGAAAATGAAACCACAGATAAACACAGATGCATACAGATAATTTTTCTGCGTTTATCTGCGTTTATCTGCGGTTCTAAATACCCTTAAACCAGATTTTTGCAAGAAATCTAATGTGCAAAGCCCGCACTACAGACGGAAGCAATTAAGCAGCTGCTTGAGCAATCAATTGGTTAGCAACCTGCTGTGCCAAGTTAATCGGAATTGCAAATCCCAGTCCTTGGGCACCTTGAATAATAGCAGTGTTCACACCAATGACTTGTCCTCGTTGATTCAGGAGTGGTCCACCTGAGTTACCAGGGTTAATAGCAGCATCGGTTTGAATAAACCCAACTTCGCGATTTCGGGAACCAAATGCACGACTTGTGCGGTCTGTTGCACTGATAATGCCTACTGTCACGGTGTTGTCTAAACCTAGAGGATTACCGATCGCGATCGCCCATTCCCCAGGTTTCAACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 827912-829876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000027.1 Tolypothrix campylonemoides VB511288 scaffold_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 827912 37 100.0 38 ..................................... TTTTCATGATTGATTCTCAACTGCCGGTAGTCATTCAA 827987 37 100.0 43 ..................................... CCCAGGTTGATTTTCCTGAAAGATTTGCTCAACTTTTGATGAA 828067 37 100.0 39 ..................................... GTCCATGTTTGCTCGAGGTTTTTTAAAACAATCCCTAAC 828143 37 100.0 39 ..................................... GTTCTTCCTCTGTAATTCCTACGAGAGAATGAGGAAGTC 828219 37 100.0 38 ..................................... TACTTTGCGTTCTTAGTCAATCATCTGTGGCTTTGCAA 828294 37 100.0 45 ..................................... GCGCTTTATGCTGCTTGGTGCAGGATTTGTACCAGACTTCAACAA 828376 37 100.0 36 ..................................... TTTGGGCAGCTCTTAACAGTTCTAGCCATTTTTAAA 828449 37 100.0 39 ..................................... AAATATTAGAACAAGAAGAAAATGGAAATGGATTAAATC 828525 37 100.0 41 ..................................... TGGCGAGCCAGATGGTATCCTTTCCTTTTTTAGGGAAATAG 828603 37 100.0 37 ..................................... GTCAATTAGTAACAATTGACCTCCTATTAAACCCAGC 828677 37 100.0 38 ..................................... TTTTAACATTACTACAACTCCATGATTTGGTAGATTTT 828752 37 100.0 41 ..................................... TTAGGGCTAGATAAATATGTTCCATTAACCGAAACAGATGT 828830 37 100.0 38 ..................................... CTCGTTTAATAATTTTACTGAACGAGAATTTATGCGGC 828905 37 100.0 42 ..................................... CCTTGCTGGTCTCCGAATCCTACTTTTAACAAAGTACCAAAA 828984 37 100.0 41 ..................................... TTGATTATTGAAAATGCAGATTAAACGCCTTGGATCTCAAT 829062 37 100.0 38 ..................................... CTGTAAGAAGTTAAGACTTCTAATCGTTGGAAATTGAA 829137 37 100.0 39 ..................................... AGCTGGGAAAGAGCGAAAGCAAGTGGTACCGACATAGGG 829213 37 100.0 37 ..................................... GTTACTGATTCGTTGGCATTAAAATACTGCACTTGGA 829287 37 100.0 43 ..................................... CAGAAAATTTTTCCAAGGCTTCCCCAATTATATCGGGATTTGT 829367 37 100.0 40 ..................................... AAAAAGGAAGTGAAGTGTTCGTAGATTTCCTACAAACACT 829444 37 100.0 43 ..................................... TTTATTGGTAGTTACCTACACCTTCTGCAAGAGCGGAACCGGA 829524 37 100.0 44 ..................................... TTTTAGTTCTTCCTCAGCTTTTTTATCATAGTAAGCTTTTTCGC 829605 37 100.0 37 ..................................... CATTTACCTCCGACAATAGGAATGTCAGCAATACCAA 829679 37 100.0 44 ..................................... ACCTTTCCGTTTATCAGGAAAAGATCTCCGTAGTCAAAACTGAG 829760 37 100.0 43 ..................................... ACCTCCTGCAGGGTTCATCATATCGGGAGTAGAACTGTATGTC 829840 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== ============================================= ================== 26 37 99.9 40 GTCGTAGACTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GTTGGAAGACAGCATTTTAGCTTACCACCTACAAAAGCACTGGTTGCCTTTACTCAAGTTGAGTGAAGACAATCTCAGGATTTATCCGCTAGATGCAACGGCAAAGCAACAGACGCGAGTCTATGGTGGCGCGCCGCCTTACGAACCACCTGATTATTTAATTTTGTAAATATCGCACCTTAGCAAAAGAGGGGTATGTAAACGCTGAAACTACCTCAATATCAAGCTGCTAAATATTGTAAAGGATTGTAAAGAAGATTATGGAAATGACGCAGTAAGCTTGTGGAACTATTTGCAAGCAAAATTTTGCAAGCAAGAGATAGTTAAATTTTTTGCCTTGACTTGTTAGGCTTTTGCGGTAAAATTAATCTTAGAAGTAAATTTTAACGCAAAATGTTTTGGAAAATGAGTACGGAGCAGTTAAATAACATGATTGTTTCCGTACTCGAGCGCAACTGTACCTTGAAAACTAAATATGATAAGAGTTTCCACAACGTAGG # Right flank : CGTACTCCGACACTGACTTTTTCAAAGTACAGTGTCGGGCTTGTGACGGTTTAAGCTAATCCTTAAGTGCGAAAACTCGTATCCACCAGTCGCGTCAACTCTCCCCGTTCCACCTTCACCAAGTTTTCCCGCGTGGTGGCGATAGTAAGATATAGAGGAATCCCGCAATCAACAGCCGCCAATACCAAAGCAGCAGATAGAGTTTTTGTCCCACCAGTGTAGTCAGCGAGAATCTCATGTTCAAGTGCTTCCTGCTGGAGATGGTAAATGCACTGCTGGATTTTGAGATAGCATTCTGCTAAATCGTCTGGGTTTTGGACGAGAATTAAATCGCGTTGGGGTTGAAAGCGATCGCCTAACCCTACCTGTGTAGGAATGTTGGGTAATTTTTCGACAACTTCTGTTCCCCGGCGCACTTCACAAGGCGTTCCTTCACCAATGACTTGCGACTTGCTCCCTTTGTCGCCATCGGAAGCGATGAAAATGATGCGATCCGGTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAGACTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 843195-842938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000027.1 Tolypothrix campylonemoides VB511288 scaffold_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 843194 36 100.0 39 .................................... CACATGATCTAGAATCCCATCATATTAATAAGGGTAATG 843119 36 100.0 33 .................................... ATGTTGGAGATTTAAAAGCATCGTATCCTCTAG 843050 36 100.0 41 .................................... CATTCTCTTCTACTTTTTTCTCAAGTAACTCTACTCTTTTG 842973 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 100.0 38 TTTCCATCCCCTTACGGGGAATTAGTTGATTGAAAC # Left flank : ATTTTGAAGCCGTCCTGCAAGTAGAGTTTGAGCAGGATGATGCACCAGGGACACCGGGGCAGTGGCTGCGGGCATACATTCGGGCAACAGTACGGTTTAGCAAACAGTCGCTGGCATTAATTGCCCGTCTTTTTTCGATCACGGTTGACTCGCCCAATCTGTTCAAAGCTGCCGAAATCTATGGACAGCAGTGGTGGCAGCGAATTGAAACTAGTGGAATTGATGTCACAAAAGCAACCATTATTCAGTTGGCGATCGATGGTTTGTGGTTCTCAGAAGTGTTCCGCCTTGGAACACTAGACGAGCCTCATCTCACTCAAGTTGTCGAGACGTTGCTTGATATGACACGAACTACCTAATGATCTAGCTGATATTTTTCTAGTCTGTTGATTCAACGCTGATGGCTTTTCCAGTTCATTCAGCCAATTTGTCCTGCAAATGTTTCATGGTTTACCACCTTAAATCGCATACTCATCATGCTGATTATTCAGTACATGACC # Right flank : CCTTGGGGTTTGAAACGACTTTTTTAAAAGAGTTCTACGCTTTATTTTGGCAAACCTCTTTCAAAAGTCAATTTCAGCCATTGATCATCTGGTTTCAAAGACTGACTGAAACTCTAAAACTATTATGTTGTCGAGGTTCTGGGCTTTTGGCAGAACCCCTAAGGTTTTTGCCCGCGCTGAGGTTTGCCAAAGTTGTTACTCTCAATCATAAGATGTTGGCTTCATTTTGTCGAGGAGAGATGGTGCCAGTTGCAGGGCGTTGACAAAGCCTACCTGAGGGAACCTCGCCGACTTTTTTAGCCTTATGTGGAGATAACTTGCTGTCCTTGGGTACGCGGACAAGCAAGTAAAGTTCGTTTCTCAGTGTTAGAGTGCGTACGCCCAATTGTGAAGCATTAGCCTATTTTGTATCGGTTGCTTGAGGATTAGACCAATATTACCTTTTACAAAATCAAGCAGATTATGGTTGCGAACTTTGGTATGTTTGCAAATATTCAATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCCCTTACGGGGAATTAGTTGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 12656-13688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000058.1 Tolypothrix campylonemoides VB511288 scaffold_009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 12656 35 100.0 36 ................................... CCGAACCTCCATCCCATATCGCATCCTTACGAAAGT 12727 35 100.0 35 ................................... TTTGTGAGCCATTCCTGAGTCGTCACCATCATCCA 12797 35 100.0 34 ................................... TTGCATCTATACGTAGATCTTGTCCGGATATAGA 12866 35 100.0 34 ................................... TTGCATCTATACGTAGATCTTGTCCGGATATAGA 12935 35 100.0 36 ................................... TCATGTTCCGTTCGCCACCGTCGTGAGAAACAACAG 13006 35 100.0 34 ................................... CCTGCATCTGCTTTTTTAACAGTTTGCGCAAAAG 13075 35 100.0 37 ................................... TAACCTAAATCCTTTAAATTCGTAGGTGTCATAAGGA 13147 35 100.0 38 ................................... TGTTATTGTAAACGTTACTTCGGCTTTATAGGAGAAAT 13220 35 100.0 39 ................................... TGTGTTTCGGCAACCTTTACTGCAGTAGTTACTTCACTT 13294 35 100.0 37 ................................... TTGAAGTGTTAAACGAGATGGAACCTGCCATTCAAAA 13366 35 100.0 39 ................................... TCGATCTGCAATTTGCTGGGCGGCTTGGTTGCCACCTAG 13440 35 100.0 36 ................................... ATTTGGTATCAAAAAGCCAACCAAAAAACCAAAAAA 13511 35 100.0 36 ................................... CTGGAAACTAACTGACTTGCGGCAGGTAGATTAAAA 13582 35 100.0 37 ................................... AAGCCGGAATCAACTACAATTATCTCAAAGTTCTGAA 13654 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 15 35 100.0 36 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : ATGGAGGAGTTCCGCGCCCAAATTGTTGATTCGTTTGTTGCTTACCTTGTAAATAAAAAAATTCTAACTCCTGAAGATTTTACTCCACCTGACGAACGTGGAGGTGTATACTTACAAGCAAGTGCGCTGAAGAAGTATCTCAAGCATTGGGAGGAAAAGTTACAAACTGAGACGACGCATCCCCACACGGGCTATAAGGTAGCATATCGCCGTTGTATAGAGTTACAGGTGCGAGAGTATATTGCTTGTTTGGTGGGTGAAGTGGAGGTGTACCGTCCAATGGTTTGGAAACTGTAACCTACTATACCATTTGTGGGATAGATACAATGCCTGAAACCCTGATGATTTCGTTCTATCCCACAAATCAGCTTCCTCACAAAGGTTTGAGGTACTTTGGCTGGATAGTTGTTGAGAGTAATTCGCATTTATTTGGACGAAAATTTGCATCCCACAAAAAAGCGCTGTAGAATTATTTCAGGGTAAGGCTTCTAGGAGCTGGT # Right flank : CGGCTGTTAACAGGCAAGTAAAAAGAGGTGAGTTGAGTGGAAAAGTCATCACCTCTTTTTCAAAACCAGCTAAATATATCCTGAAATTTTATTTTCTACTTTTCACTCATTCTGTTAATGTAAAAATTGTTATCGCCTAAAATGGACTGTCAAGTTTGAGTTTTGATAATATTTGTAAATATTTAGCTGAACAATACCCAGCAGAATTTGTCAGTTGGTTACTGTCAATTGAAACGACAGAAGTTAAGATACTTAAAACAGAACTCTCCTTAGAACCAATTCGTGCAGATTCTGTCACTTTTCTACAAACAGCGAATCGTATTTTACACATTGAATTTCAAACCCTCACCATATCTAATCCCCCGCTTCCCTTCCGGATGCTAGATTATTCTGTAACCTGAGTTCGACGTAAGCGAGTTAGGCCACAACAAGCCCTAAAGCTTGAGAATGTAAGAAGTTCGCCTCTGGCAATGTTGCTAAATCTTTTGTTGTTAGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 62293-63384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000058.1 Tolypothrix campylonemoides VB511288 scaffold_009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================== ================== 62293 36 91.7 35 ....................C.AG............ GAAATTCTTAAAGAAATCGCCACTTACAACATTTC 62364 36 91.7 36 ....................C.AG............ CATCGAGCCAACACAGCGCTGCTACAAGGATTACAC 62436 36 91.7 35 ....................C.AG............ AACCGCACCGACTTGGCTAAGAAGTTCCCGTCAAA 62507 36 97.2 36 ....................C............... TTGCAGGCGATGTTCGACGCGTGCTACTTAGCCAGG 62579 36 100.0 38 .................................... CTTGAGATGGACGCACTGAAAGACGCTGAAGAGGGTAC 62653 36 97.2 35 .....................A.............. CAATTTGAGTTAGCGGGTTGGACGGGCTTTGCTAC 62724 36 100.0 35 .................................... ATTAGCTTTGAGAAAGGTGCGGTTCACGTCTTTGG 62795 36 100.0 39 .................................... TAAGGTACGTGCATAAATCTCCGTCTTGTGGCACTAAAC 62870 36 100.0 35 .................................... TGAACCGGACGCAACGATCAGGTGTGACAATCGGC 62941 36 100.0 33 .................................... AGTAATGTTTACAGCTTTTCCAAATCCTAACCC 63010 36 100.0 88 .................................... TTGTACAAAGATAGAGGTCATGCGATCGCACTCGATACGTTTCCATTAATTCAACTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 63134 36 69.4 34 NNNNNNNNNNN......................... GCCTGAGAAAGGTTGTGTAGTAGCGGGTTTGGTA 63204 36 100.0 38 .................................... GGTTGTCTCCCCGGATGGCAGATTTAATCATCAAGTGG 63278 36 100.0 35 .................................... CTGCATTATTATTATTGCATACCCAGATAGCAGGA 63349 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================================== ================== 15 36 95.9 40 GTTTCCATTAATTCAACTTCGGGAGAAGTTTAACAG # Left flank : GAGATTTCCAGCGCAGCAAATGAAGATGTCACCGCCAGTGGATGGAGGGAAGTTAACACTGCCAAAGTCGATTTTTTGTTTGAGTAAAACGGGAGATAAAGGCTTTCCTAATCGTTTTCAAGTGGTGTTGCCGAAATGGTCGTTAAATGATGTAGAGTTTTTGCGGTGGATTGTAGGTTTTGGTGGGAATGTTAAGGTAGTGCAACCAGAGGATTTGGTGGAGAAGGTTAAGGGGATTGGAGAGGCGATTGTGAGGGTTTATGAGAAGTAAAAAGTAAAAAGAGAAATCAGCTACTTAGCAATTTGAGTTCTGAAAAAAAAGGTTTAACACTAACTTTTTTATCTCTGACACCAAATTCTCAACAAGGTAATTTGAGTTCTGAAAAAGAGGGTTTAACACTAACCCTCTTTCTTTTTACTTTTTACTTCTGCTAAATGACTCTTTTCGGAATCTGAGTTAACCCTTTTACTTTTTACTTTTTACTTGGCTCCTGTTTATC # Right flank : GAGCAGGGTTCTCAAAGCTTTCCCTTGAGCCAAGTCTACAACCATTTTGCGCGGAACGTCAAATTGTGTCAGAATAACTGCAATCATTTCTCAATAAAAAGATATCAATAAGCCTCAAACCCTTATCTGTAGGACGTTCGCGGAAGTCAACGAAAGAATCAGACTTTTGGCGATTTCTATTCTTCCGCGCAAATGACCGAGTAGGCGCAAGAAATACGGCGTCCTTGCTTCAACCTCCTAACTTTAGTTATGGGGATTCTTTCTTTTGCCTTTTTACTTTTTACTTTTTACTTGTTGTAACCAACTGGCTTAGGCGCTTTAAAATCCGTAGGACATCATACAATTGATTTCCACGGTTGCGAATATCGAAAATATCAGATGTGCCGTACTGTGGTGTTTCTCCTTTAAGTAATTTAATAAAGATGAAACTTCCTCCAGTACTAATCATCCCATAACTTGGTTTATCTGGGTTAGGATTTCCTAACATATAAGCCAAAATC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCAACTTCGGGAGAAGTTTAACAG # Alternate repeat : GTTTCCATTAATTCAACTTCCGAGGAAGTTTAACAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 69415-68079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000058.1 Tolypothrix campylonemoides VB511288 scaffold_009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 69414 35 100.0 38 ................................... TTTTTGCAGCTTTTCTATTTCGCTTCTATGTATCCATT 69341 35 100.0 38 ................................... TTTTAGGAATCTCCCTTCTTCCACATCTGCTAGGGTAA 69268 35 100.0 42 ................................... TAACCATAGCCGTCCGTGCCCCTACCGCGAATATTGGTATTA 69191 35 100.0 37 ................................... CTTCTGATGAAGTATCCTCACCTTTGTTTACTTCTTT 69119 35 100.0 39 ................................... ACTTGGATGCCTTGTTCAGCATAGCCGCCGGTCACTGGT 69045 35 100.0 35 ................................... CTTGTAGCCTAAGTTTTTGAGACAGAGGGAAAGAT 68975 35 100.0 40 ................................... TAAAAACTTATTACTACCAATTTCGGTACAGTATATAATT 68900 35 100.0 35 ................................... ACTGTTTGATTACTAGATAAACTAGTAGCACTTGA 68830 35 100.0 36 ................................... AGTATCTCCTTTACTGGAGAAGTAACTTGAGCTGAG 68759 35 100.0 37 ................................... AGGAGTACGCAAAACCTGGAAGAGTGTATCCTATAGG 68687 35 100.0 37 ................................... TGGAATAATCCTTCTTGTGTAGTATTATCCATTTTGT 68615 35 100.0 36 ................................... GGTCTGAACCAACCCGGCTCGGATCTTAGCATTACT 68544 35 100.0 37 ................................... ATTATTTTTTAATCCCTCCGCAATAATCTGCTCACTT 68472 35 100.0 35 ................................... ATATTTTGGCCCTGAACCTAATATTTGCCAAATTG 68402 35 100.0 35 ................................... GTGGGTGATCTCCTCTTTGTCTTCGCTACTTAAGA 68332 35 100.0 39 ................................... CTTCTGTTTCCAGTACCGTAATACTGGTAAACACTTCTT 68258 35 97.1 36 ..........A........................ TCTGTGCGTGAATCATTTCGCGATGTCTGACCGTTG 68187 35 100.0 39 ................................... AGCTGTAACATTTTTCGTAGTCCTGAAGGGATATCATTC 68113 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 19 35 99.8 37 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAACAAAAGTAAAAAAATAAAAACAAGTGGAAGCCAAAAGGTCGGAGATAATACTCCGACCTTTTTTTCTGTCCTATTTCAAAGTCATATATAGCGGTTTTTAGGTAAATGAAGCACATTTGTGACCTCTCTCCAAACCTCTCTCCTATAAGGAGAGAGGCTTTGAATCTTTCCGCCAACGCTAGTAGGGAAGGGGGTTGGGGGGTTAGGTTTCTTGGCGTAGTCTAATTAACAACAAAATTGCTATAGTTTACGCGCCACCGCCAGGTGTACCGTCCAATGGTTTGGAAACTGTAACGTACTATACCATTTGTGGGATAGATACAATGCCTGAAACCCTGATGATTTCGTTCTATCCCACAAATTAGCTTCCTCACAAAGGTTTGAGGTACTTTGGCTGGAGATTTGTTGAGAGTAATTCGCATTTGTTTGGACGAAAATTTGCATCCCACAAAAAAGCGCTGTAGAATTATTTCAGGGTAAGGCTTCTAGGAGCTGGT # Right flank : GATAAACAGGAGCCAAGTAAAAAGTAAGAGGGTTAGTGTTAAACCCTCTCTTTAAAAATGGAAACTACCAAATTGATAATGTATCTTTTAATTTTTTATTTAATTAGCAAATTTATTTTGTGTTTTATTTGGAAAACTTAATGATTCCAACTAAAATAGTGATAAGTACGCTAATTTCTTCGGGAACTCGATATAACTTTAGGTCTTCCACAATTTGTTTTTCTTGACGTTTATATATTCCAAAACGCCAATCTTCACCAGTTGTTACCGCTCCATATAATATTGGCGTATCTGCCTCAGTCCATTTGTCAAGAGCAATTAATTCCACCGCTAGCTGCGTAAAACCTCTACTTAGATCTGCTTGTTTTGCTTCGATAACTACCAGTCCTTTACCTTTAATGATGTAATAGTCAAAACTATCTCTTAGTTGGTCACTTACGCTGACTGGATACTCAATATTTAATTGTGTTTCTGTAATATCACACACTTCTAACAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 177952-177479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000039.1 Tolypothrix campylonemoides VB511288 scaffold_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 177951 37 75.7 39 C.AACGT.CAG.......................... TTGCTGCACTTCAACTAGATGATGAGGTATGGGTAGTAG 177875 37 100.0 35 ..................................... CTTACAAGAACGAGGAAAAAAAGCGAGACAGCTAA 177803 37 100.0 35 ..................................... TAATCCAAATCAGCTTTTAACACTACATATTCTAG 177731 37 97.3 36 G.................................... GGGATTCAGACATAAACTTTCCGGTACAAATAAAAG 177658 37 100.0 38 ..................................... TACACAGGGCGGCTAAATTTTGAAGTACGTGCACTATC 177583 37 100.0 31 ..................................... TGGGCTATTTTCTTAGCTGTGCTTGTTTTAA 177515 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 96.1 36 TGTTTCCATCCCCGTTAGGGGAAGAGGGTTTGTAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCTCCTACCGTGTATTACACAGTAAGTTTAACGTTAAATTAGTGAAGACCACAATGTAATCTGTTGTATGACACAAAAAGGCAATTTACGGCGAACTCCCCATGTATGACAGGTTAACATTTACTCTTTCTCGTCCATGTATGACATGGTTGTTCTCCAGCAAGCTTTACCACGTATTACACGGAGGGGTTTTTAGCCGAGCCACAATCGCATTGAAACCTTACCCTGTTAGGCATTAATTCCTCTCTCCCTTTTAAAATGAG # Right flank : AGTTCACTTCTGGAACCCTTACTGAGAGGGGATTTGAGACCCCCCCAATCGACACAATCTTTTTTTGTTATCAATAAAGGGTGTCTTATTGAGAAAAATCAGGAAACTTGTCGTCTGAAACCCTTGCTACAAAGGCAATCGACGCATTTCAACGAGATTATACGGTTTTCGAGGTTCGGGGGAGGTGTGTCGATGAGTGTCAACACGCTCCCCTAAGGCTATAATGTCTCACCTATGGTTGTCAAGTTTTTAACAGATTTGAATGCAGCCAACTAGATATGAATTGCGATTCTTCAAACTACCTCGGTCTTCCCAGTGTAGTAATATACAACACCGCTTCGTCCCTAGGAATACCCAAGACTTCATTCACTTGGTCATCAAAAAATCCACCAATCCCGCTGACGCCTAAACCAAGGCGAATTGCGGCTAAATTGAGCCTTTGTCCCAAATGACCGGCATCCATATGCAGATAACGGTAAACGCGATCGCCGTACTGACCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCCATCCCCGTTAGGGGAAGAGGGTTTGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 181219-180819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000039.1 Tolypothrix campylonemoides VB511288 scaffold_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 181218 36 100.0 36 .................................... CTGTTCATCCAGGGAGCCAGATATACCGGAGATGGT 181146 36 100.0 41 .................................... CTGCCCGATATAACCAATGACAACACAGTCGATGATGTAAT 181069 36 100.0 36 .................................... TAATGAGACAATAGCTAGGGTTAATGATGTACTAGG 180997 36 100.0 35 .................................... GTCGCTCTCGAAGAAGAAGGTAAGCAATACTTGAT 180926 36 100.0 36 .................................... TCCTTGTAACTCCCCCTCTGGAGGCTCAACCAGTAA 180854 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 99.5 37 GTTTCCATCCCCGTTAGGGGAAGAGGGTTTGTAAAG # Left flank : AATATTTCCATTAAAGAGCTAACAAATACTACTTTTAGAAAAGCTAGAATTCGCGGTACCCAACCTGATATTGCTTTTTATATTGGAAACAATTTGAAATTTCCTCCCCGAAATAATTCTCCCGTCAATCTCAATGAGTCAAATCCACCCACTTTAGTTGTTGAGATTGCAGCTTCATCTTTGGAAGACGATACGGAACGCAAACAAAAACTTTACCAACGCTTGGGAGTCCAAGAGTATTGGGTTGTTGATGTCAATGCTAGCAAGGTTATTGCTTCTTCTTTGTCTGAAACAGAAAGTACTCTTATTCAGGAATCTCAAGTCTTACCAGGATTGGAAATTGCCTTAGTTGAAGAAGCCCTCAGGCGTTCTCAAACTGAAGATGATGGCGCTATTAGTCGTTGGTTACTGGCGACATTTAATCAGTGAAGGGGACTGGGGATTAGGGATTGGGGATTGGGGGTACAACGCGAAACTTTTTTTGTGGGATAAGCCCTTCA # Right flank : TTGACTTTTGCGGGAATTCGACCCGCAGATGAAAGAGCCTTACTTAACGTTTCCATCCCCGTTACTGTACGTTCGCTTATTTTTGAAGGGAGAGAGGAATTAATGCCTGACAGGGTAAGGTTTCAATGCGATTGTGGATCGGCTAAAAACCCCTCCGTGTAATACGTGGAAAAAGGGGATTGAGAGCCTAGGTGTAATACATGGTAAACCCAGCCCCGAGAATCCGTATATTACATGGGAAATCAATTCATGAGCGAGCGTATTACATAGATCAGAACTGCCGTGTAATACACGATAAAGCAGTGCTATTCAAGGCTCAGATTAGCGTGTATTACACGGATATTGGTTAATATTGAAATCGGACTTCAATTCCGTTTGTTATTCTTTATAAATCGAAAAATTACGTCGAAGTACCTACCGGAGCTACCTGATAAAGGGACTGTGGCATTTTCATTAAACAAAGAATTTGTTTTTGAAGTGCGTTAATTGGTGTGATGAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGGTTTGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 188056-186300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCB02000039.1 Tolypothrix campylonemoides VB511288 scaffold_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 188055 37 100.0 34 ..................................... AAATATTTTGTCAGGAGATAACCGAGGATAAACG 187984 37 100.0 35 ..................................... TTCAGCATCTTTTAGCGCGTCCATCTCAAGAACGG 187912 37 100.0 34 ..................................... AAATGTTCTTATTCGGTATCAAACTCTTATAGAG 187841 37 100.0 34 ..................................... CAACCTGACTCCCTACCAACTTTGCCTACTCGAA 187770 37 100.0 33 ..................................... AGATGGGATGTGATACTCGTTTGGGATGGGTTT 187700 37 100.0 35 ..................................... TGCTGGAATTGAAGCTCTTGAGATTTCGTACAAGA 187628 37 100.0 34 ..................................... AAGTATCACAAGGTACGCCCAGAGCCGCCATTCA 187557 37 100.0 31 ..................................... TCTTAGGCAGTTGTCCTGGCGTATTACGGGA 187489 37 100.0 35 ..................................... TTTTCTTTAACAAAGTTAAAAAGCTTCTCTCTCTC 187417 37 100.0 34 ..................................... GTCATAGTAAGGGTTGTACATCAACGGATTGTTG 187346 37 100.0 37 ..................................... CGGATCTAATAATTTTGCCATCGTGATACAAGCGGGA 187272 37 100.0 35 ..................................... ACGTAAATCGGCTAAGTACTCGGCAGCAATGCTTT 187200 37 100.0 34 ..................................... ATGATTGGAGCATTCTCTAAAAATCAGGGTACTT 187129 37 100.0 34 ..................................... TGCTATTTTATCTGTATGCTCTTTTAAAGCTTTT 187058 37 100.0 34 ..................................... AAGTGTTTATCAGCCTCAAAATCAATAAGCTGAT 186987 37 100.0 34 ..................................... CTGTACCACATAAAAGCATAAATAGAAAGCTCAT 186916 37 100.0 37 ..................................... AAGTATCATAGGTTATTACATTAGAAGGAGAAAGGAG 186842 37 100.0 34 ..................................... GGAATTCCTTTAGATGGAACTAAGCAACAAGAAG 186771 37 100.0 33 ..................................... CCATCTATTATCACTAAAGCCTGTACTACCCAC 186701 37 100.0 37 ..................................... AAAATTGACGTGTTGGGTAAAGGAGCCGCAGTAAATA 186627 37 100.0 34 ..................................... AGCTTCTTCTTGGGTAATGGAGTCGCCTAATTTC 186556 37 100.0 36 ..................................... CCAACAAGGGAGGACGATACCCACTGGGATTGAGGA 186483 37 100.0 38 ..................................... TGCGATGCCCTCGTGCGTCGAGGCGGCGTACTCCAAAG 186408 37 100.0 35 ..................................... AAATTTTCTACCTCCACAGAAAGACTTTTGATAAA 186336 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 100.0 35 GTTACAATTTCTACGAATCCCTATCAGGGATTGAAAC # Left flank : AACATCCTGTGATAAGTCGTCAATGGGTGCAGTATAGTATTTTTAAGTGCAACTTGAGTGGACTCGTTGGTACTTGTACCAAAAAGCGTGTTTCTGTGAAACAAGAATCTCTCGCTACACCGCAAGGTTAGCGCGCGAGTGTCAATTCTTGTGTGCTTGTTGTCAAGGTAAAGTGGAAAAGATAGGCGGCGAACAGCCGCGAGACCAAACCATCTTTTTTGCCTAGGTTTTAACTTGTGATGACGACTTGTTGCGCGGAGGGGTGGGTGTTTTTTTCAGGTAAAGCCAAAAAATGGCTGGATGACTTATGACACAAGGTTTTGAGCATCACTTACCCAATTTTCCATCCGCGCAATCTCCCAAAAGCTTGCCAAATCTGACTTTTAGCTTGTATGATGTAAAAAAATGTTTGAACGCTGCGTCTGAAAACGGCATAGTTTTACAGATCCGCGCAACCGAACCTCGAAAACTAAATATAGTAAGCATTTGCGATGCCAGCA # Right flank : ATAATAATAAATATGCTTGGCGTAACAGGCGATCGCGTCTACTAAAGGATTTCCAAGAAATATAGCGCTTCTGGTTTGGATGAATTACAGATTTATATCAAGTCCGGCAAATTACCGATAATAAAACTTGCCGCTATAAATTATTTATCTTGTGGGGTGGGCGTCCCCGCCATTGGTGTCAAGTTAAGGCCGATGCCCAGATGTCAAGTGACCTAGCAGCCGTTCGTCGGTGTCGTTGACGAACGGCTTTTACCAAGCCCATAGAGCGATGATGCTCAACCAACCAAGGAATGAGTTGTAATAATGGGTTGTGCGATCGTGCGCGATGGAAAAAATACAAGCTGCGAAAGACCATTTCCAGCGAAATACGTTCTAAGGGCTGCTGCAAAGCCACAGCGACATCGGCACACAAATCATTGAGTACTGCGTAAAAAATCCAAGTAGCATAGACTTGCATCTGCACACCATTAGTGCCACCAACCCACAGATAAGATAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //