Array 1 45239-48297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTV01000014.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50272 50272_c14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 45239 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 45300 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 45361 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 45422 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 45483 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 45544 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 45605 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 45666 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 45727 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 45788 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 45849 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 45910 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 45971 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 46032 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 46093 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 46154 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 46215 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 46276 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 46337 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 46398 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 46459 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 46520 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 46623 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 46684 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 46745 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 46806 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 46867 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 46928 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 46989 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 47050 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 47111 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 47172 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 47233 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 47294 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 47355 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 47416 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 47477 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 47538 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 47599 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 47660 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 47721 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 47782 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 47843 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 47904 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 47965 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 48026 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 48087 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 48148 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 48209 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 48270 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 64843-67313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTV01000014.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50272 50272_c14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64843 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 64904 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 64965 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 65026 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 65087 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 65148 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 65209 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 65270 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 65331 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 65392 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 65453 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 65514 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 65575 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 65636 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 65697 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 65758 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 65819 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 65880 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 65941 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 66002 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 66063 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 66124 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 66185 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 66246 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 66307 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 66368 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 66429 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 66491 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 66552 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 66613 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 66674 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 66735 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 66796 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 66857 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 66918 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 66979 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 67040 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 67101 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 67162 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 67223 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 67284 29 100.0 0 ............................. | A [67311] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //