Array 1 1574-3049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000001.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1574 29 100.0 36 ............................. TATGCTAGAACAAGACAGATACAAAATGATGCAGGT 1639 29 100.0 36 ............................. TTGATTAATAATTTTTCTGATTCTTATTCTTTGTAT 1704 29 100.0 37 ............................. TTCATATTCCACAAATTTTGTTTACACTGAATAGAAA 1770 29 100.0 37 ............................. AATTATTACATAACTAAATTATAAAGAAGTCATGACT 1836 29 100.0 38 ............................. TCAATAATTAATTTGAAAAGACAATTAATTATTTCAGT 1903 29 100.0 36 ............................. TAGTATTAAATGGCATTTGTCTTAATTGAGCTGATA 1968 29 100.0 36 ............................. TCGAACGAATCCGTGCGACGAAATATAAACATAATT 2033 29 100.0 35 ............................. CTATAACTTGATAAAAAGCAGTTTTAGCACCAACG 2097 29 100.0 37 ............................. GGAACATAAACATCCAATCCATCTTCTCCAGGAACAA 2163 29 100.0 38 ............................. AATAAGAATCGAATACTTCGCTTACCTGTGTCTTTTTG 2230 29 100.0 37 ............................. GCGTATGCCCTGCTGTTATTGCAACCTTCATACTTAA 2296 29 100.0 38 ............................. CTGGTATGCTAAAGTTTAGTTTTTGAAGTGTAAATTCT 2363 29 100.0 37 ............................. TCAACCTCATTTTCATTTGCTTTCTTTTCTTTTTTAG 2429 29 100.0 37 ............................. GTGGTTGCTTATGTATATTGCAATGTTCCAATATATA 2495 29 100.0 37 ............................. TCTTGATTAAATGTTGTAGTTTTTTTAGTATAATCAA 2561 29 100.0 36 ............................. AATTTTAAGGAATATTGCAGGTCCTGCAAAGTTTTT 2626 29 100.0 36 ............................. ATTTTTTTGCAAGGAACTTTGCAAAAAGAAGAAGAA 2691 29 100.0 37 ............................. CGGTGTATAATCTATCGCATTTACTACAGCTTTATTT 2757 29 100.0 37 ............................. AGAAGTATAGTAATAAATAAAAGCATACCAATATAGG 2823 29 100.0 37 ............................. TGAAAAATTAGTTAAAAACTGCATCAAAGTATTGATA 2889 29 100.0 38 ............................. ATTACATGGGTAAAAATTTTGATGATTTTTATGACAAT 2956 29 100.0 36 ............................. GTTGGAGTTGGTGAGTTAGGTAACTATAGTGTTATG 3021 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAATACTATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAAATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTACAACTAAAATAATACAATAGAATTAGTTATTATTCAACAGGATAGTTTGAAAATTGAATAATTTTATAGATATGAAAGTTATTTTTCTTCTAAGAAAACAAACTAGAACAGTAGAATATATGGTAAAAATTACCTATAGTTTTTGTCCTAAAAAGTTCCTATTATTAATTTAAGCTAGATAAATTTGAAGAAGTGATATAAATTGAAAGAAGGAATATATTATGCTAAATAAAAAATTACCAGATGCAGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 250531-251218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000001.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 250531 29 100.0 37 ............................. GTTTATAAAAGCTGTTGATAAACTTTCTTGTATCTTT 250597 29 100.0 37 ............................. ATTCTAAAAAAAAATCAATAATATCTAAAACTGATAA 250663 29 100.0 38 ............................. AAAGGTATGTACTTTTTTGCATTATTCTGTTATTATAG 250730 29 100.0 36 ............................. TTCAGTTGCTAAATCTTTAATTACAACAGCTTTAAC 250795 29 100.0 36 ............................. AACTTTCTATGAAATTATTAAGCAAATCATACTTAA 250860 29 100.0 38 ............................. ACTATTTGAGTCTAATGAAACTACATCTTTTATTGTTT 250927 29 100.0 37 ............................. AGGGAACCCCACCAGCCCTTAACTCTATTGTGTTACA 250993 29 100.0 37 ............................. TAAACATTATTATAAAGAGAATCAGAATAATTTTTAT 251059 29 100.0 37 ............................. TGATAGAAATCGCGATTGGAGCAACAACAGCAATAGC 251125 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 251190 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.7 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACTGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 191477-192361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000002.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 191477 29 100.0 37 ............................. AAATCTTCTACTTCTATAGCTGGGGTTGGTTCTCTTG 191543 29 100.0 37 ............................. TAATTTTTTGAAATTTATATTTATCCAAAACCCAAAT 191609 29 100.0 37 ............................. TTAATTATTGGAAAAGATTTAAAAAGAAGGTTGAATA 191675 29 100.0 37 ............................. CATTGTGGACACATTTCTTTTTTTTTGCTATACTATA 191741 29 100.0 36 ............................. CTACCTCGAAAAACTGCATGTTCTTTAACAAACGAA 191806 29 100.0 37 ............................. GACTCTGCCATCCCTGTAACGAACAGCCTTACAGCAA 191872 29 100.0 38 ............................. ACTTATCTGTAACCCTTATATGTTCAAATTCATAGCCG 191939 29 100.0 35 ............................. TATTTCTAGCGACTTAGTCGGTTGCTCCATTTAGC 192003 29 100.0 35 ............................. CGTGCATATTTAACCTCTTTGTTTAATCCTAAATT 192067 29 100.0 37 ............................. GCAATAATATTATCAATTTTAATATTTTGTTTCTCAT 192133 29 100.0 39 ............................. AAGTTGTCACACTTGGTACTTTATCCTCTTCAAATACTA 192201 29 100.0 38 ............................. ATTTGTCCTTCTTTTGATTTTTTGCTTTTAGGTTCAAG 192268 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 192333 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTCTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAAACCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 395867-396225 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000002.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 395867 29 100.0 37 ............................. TTAATTGTTCAATCTCATATTCTTCTAACTCTTCAAG 395933 29 100.0 36 ............................. AAGTTTGAACTGCTATCGCTTCAACTTTTCCTTGTA 395998 29 100.0 38 ............................. ATGTATTGCATTATTTTCAAATCTTCTACTCTTGGTAT 396065 29 100.0 37 ............................. TGGGGGGGCTATAAAAGTAGTTAATGGAGTATATAAA 396131 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 396197 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTGTTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCGCTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAATATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 71313-71540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000015.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 71313 29 93.1 37 .G..........................G GTAGTTTCATTAACTGCATCACCTAGTAAAACATTAG 71379 29 100.0 38 ............................. GCTGATGTAGGTATTGTTGCCCCTCTTACCACAGCTAG 71446 29 93.1 37 T........T................... GCTATAAATTCACATACTGTCTCTAGCACAGTTCCAA 71512 29 93.1 0 .........T..................G | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 94.8 38 GTATTATATAAACTAAGTGGTATGTAAAT # Left flank : TGTAAAGAAGCTGTATTTGTAACTGAAGGAATAGAATATCAAGTAACAGATGGTGATGGTAATGTACTACAAACATATCCAGTTAGTGACTATTCTAGAATGCAACAAGAAACAACAGCAGGTACTAAATCAAAGGGAACAACAGCATTTGCTATAACATCAGACTCAAATGCTGTAAAAATAATTGTAAAAGATAAAGTAAATGACAAAGTAATGGGAGAAATAAATGCTACTTTAGAATAAAAATAGTATTAGAGAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATAATAATATAGATATTTTGCAGTGTACGATTTTTTATATAAATTGGATGTAATCATTGAAAGTACTATGATATAAGCATGTTTTGTGGTGTGTGAAAAACACTACTGGTTACTCACTGCAATTTTAATATTGTTTTATATGTGTAAGGATTGAAAATGCTCAATTTATTTTGAG # Right flank : GAATAATTGATGAAAAAATATTTCTTGTGTTATATAATTAAATTAAAAATATGTTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAGATTAGTAAAGAAGAAAGAGAAGCAACAAAAGAAAGAAATAAACAATTTTATGAAAAAATGAAGAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATACAGGAATTTATGAAGAAATATCAATTAGAAAATTTAGATGAAAAAGATTTAATAGTATTAAAGAGAATAGCAAGCGATTTGTTTGGTAATGGTCTTATTAAGACAGGAATGGCTTTGAGTTTTGCCGAAGCAAAGGAACAAGCAAAAATAGGATACCTTAGCGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATAACAATATAGAAAAACTTATAGAAGATAAAAAATAATGGACTGAAAATAATAATACACAAAACACTTACTTAAATAGTAGGTGTTTTT # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATAAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58206-56597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000022.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 58205 29 100.0 37 ............................. CATAATTTTGCTAGGTTTTGCCAAGCTCCTTATGTTC 58139 29 100.0 37 ............................. AAGTTTGAACTGCTATCGCTTCAACTTTTCCTTGTAT 58073 29 100.0 36 ............................. ATTTAAGCATACCCCCCCACAAATCTGGATAATATC 58008 29 100.0 37 ............................. TTTGCAATTTTATCAGTTCCGCCAAAACTCTTAAAAC 57942 29 100.0 36 ............................. TTTTTTATTCTCCTACAACTTTCAACTGTTAAGTTA 57877 29 100.0 36 ............................. CCTTTTTTCTTTGTAGTACTACATTTATCTTTCTGT 57812 29 100.0 38 ............................. TGGCGTAAATGGAGTTATATTTATGATTTTGTTGAACA 57745 29 100.0 36 ............................. CCTTTTGCACCTTACACTCTTATAAGACAGATAAGA 57680 29 100.0 37 ............................. ACATATGTAGCGTCAAGTGCAGGTACTGACAATAAAT 57614 29 100.0 38 ............................. TCATTAGCCAAAAAGTTTATCATATTAAAATTGTGCAT 57547 29 100.0 37 ............................. TTTAAACTCTCTAATATAATGATTTTCTTTGTATATA 57481 29 100.0 37 ............................. GTTCTCTTGAATCTGTGATGTATCTCATAATAAAATC 57415 29 100.0 36 ............................. CTATAGTAGTTGTACCCTTGCCTCTCATCTTTGCTT 57350 29 100.0 36 ............................. CCAAGCATCTTATTAGTATTAGAATCTCGACAAGGT 57285 29 100.0 37 ............................. TTCTTTTTTTAATCCTCCATTTTTTAAAAGTTTTATA 57219 29 100.0 38 ............................. AAACCTATTTTTGGTTCATAACAATATGTGCATTTCAC 57152 29 100.0 36 ............................. CAAAAAATTGAGATAGGCAAAATCTTAGCAATCTTA 57087 29 100.0 37 ............................. GTTATAATTATTTCTTTTTTCTTTCTAATACAAAACT 57021 29 100.0 36 ............................. ATAGTCAAAAGCAACATCATAATCACGTATATTATC 56956 29 100.0 37 ............................. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 56890 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 56824 29 93.1 38 ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 56757 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 56691 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 56625 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 98.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 256742-255927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000003.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 256741 29 100.0 37 ............................. ACTTATGTGTCGTCAAGTGCAGGTACTGACAATAAAT 256675 29 100.0 36 ............................. TAGATTTAGTCATATATTTAAAAACTTCATAATAAG 256610 29 100.0 37 ............................. TCAAGTGAAGGTCGGGTATGTCGGGAACGTTGTTTAG 256544 29 100.0 36 ............................. AAGATACAAGAAGAATTTTCAGTAGAGGATAAATTA 256479 29 100.0 36 ............................. GAATATAATTACTCATTCTAGATGCTTGTATAACTT 256414 29 100.0 38 ............................. GAACAATTTGGAACAGTTAAAACAACATGGTAAAGAGA 256347 29 100.0 37 ............................. TTTGATTTTCTGTTTCTGCTTCTTTTGTTATATCAAA 256281 29 100.0 37 ............................. GTTTTTGAAGTTCAGATAGTGAGTGAAAAGTTATCTC 256215 29 100.0 36 ............................. CTTTGTTACCGAACATGTCAGCATCATTTGCAATGT 256150 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 256084 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 256019 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 255955 29 79.3 0 A.C.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 95.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTGTGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAGTAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11857-11500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000029.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 11856 29 100.0 37 ............................. ATTGGTGTACAGTTTAGGAAATGGCTTAGACGAGAAG 11790 29 100.0 36 ............................. TTTGCTACACTTTTATTCATATTTTCTTTCAATATT 11725 29 100.0 36 ............................. TAAGGAAGGTCACATAGGATTAGGTCAACCGACTTA 11660 29 100.0 37 ............................. TATACTTCCTAATGCAATCAAATAAGTACCTAAAATC 11594 29 100.0 37 ............................. TTCGCAACTTATGATGGTGAAATGATTACATTAACAG 11528 29 89.7 0 ......T.........G...T........ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTGATTGGTGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTCTATGTATCAAAAAAGTAAAAAGCCACTCTGTGCAAGAGAGTGACTTAGATGTTGAGCTTAAATTTTCATTTAAGTTCAAAAAAAATAAACATTAAATTGTTTAGAACTTCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGTTCGATTTTTGTAATAAAATATGGCTTAACAATTGGAATACAAGGCATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGCTCACTGCAAATTTGAGAGAGGTATGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGG # Right flank : AAAGCAAAAGATAGGAATGATAATTTTAAAACTCCAGACTTTTATATTAACAATGTGGAGAAAAACTAAATAGAAGAAAGAAGCACTTACTTAAATGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGGATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAGAAATAACAAAAATAGAGCATTCTCCCCGACCAAAGATTGAATGCTCTATTTAAACACCAGAAGTCACCTTCTATATGAAATATTCTATCATATAAGGGTACTTCTTTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 42251-42475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000004.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 42251 29 100.0 37 ............................. AAAGCATCAGTTTTAACTGAAGTAAGTGCAGTAGTCA 42317 29 100.0 36 ............................. GTTTCACTATCAACTATTCTAATATTATCAGTTTTA 42382 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 42447 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 37 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGCATTGAGAATATATAATAAGTATTATCAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11256-10186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000030.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11255 29 100.0 37 ............................. CAAACATAATAGCGCAAGTATAAAGAAAAATAAATCT 11189 29 100.0 37 ............................. ACTGATAAACATATTTTCATTTTTAGAAATATATAGT 11123 29 100.0 38 ............................. AACAGGAGCTTTAGGAGTAACATCAAAAAAATCAAAAA 11056 29 100.0 37 ............................. CAGCACATGTCGAACATTGAGCGAGGTGGTTCTAGTG 10990 29 100.0 37 ............................. TATAAAAAGTAACAATTTCAGTCTCCCTACTATCCAA 10924 29 100.0 37 ............................. GTAATTTTAAGATTTTTTGTGTATGGAAATGGAAGGA 10858 29 100.0 38 ............................. TTTCTACCACTTCTCTAGTTTTATTATAAATACGAAAA 10791 29 100.0 37 ............................. ATTGTTACAGAAAAAATTGTTATTGATTTAACTCAAT 10725 29 100.0 36 ............................. CAGCCAGAAACTTCGAATTTGAACTAAAATGCGTGG 10660 29 100.0 37 ............................. CTTAATCAAAAAGTTCTTGATTCACATAAAAAACGAG 10594 29 100.0 37 ............................. AAACTTTTTAACACTGATACTATAAACTTTGATAAAT 10528 29 100.0 37 ............................. ATTTTAAAACCTAAATTATATAGCTCTTTATTTAATT 10462 29 100.0 37 ............................. CCTATACTTTCAATTCCTTCTTTGAATTTATCTTTTA 10396 29 100.0 37 ............................. AAACTACCACTCACCTTTTTTACGTTGCCAGTGAAAA 10330 29 100.0 38 ............................. AATTAAATTCTAAAGAAAAAGATAGTAATATTTATTTT 10263 29 100.0 18 ............................. TTTTCATCTATTGCATTA Deletion [10217] 10216 29 79.3 0 A.G.A...A........C.........G. | AG [10206] ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.8 36 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAGAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATATAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 35629-36775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJVD010000005.1 Clostridioides difficile strain lsh24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 35629 29 100.0 37 ............................. ATAATAATCAAGATTTAAAATCTATTGATACTGTTTT 35695 29 100.0 37 ............................. TAATCTATCGAGGGCAAAGAAGGAGCAGGGTCAACAG 35761 29 100.0 38 ............................. ACTTTCAGCATCTTTTATAGTTGCTCCATTTCTTATAA 35828 29 100.0 36 ............................. TCAATTTTATTTAGTAATATTAAACAAAAAATTAGT 35893 29 100.0 37 ............................. AAGTCTGTATTTAACTTAATTATAGCTTTATTTATGT 35959 29 96.6 38 C............................ AAAGAAATTATGGCGACCTTTAGCTTTGAAACATACGA 36026 29 100.0 36 ............................. TCACTATATTTTACTGCATAATAACCATCTTCAAAT 36091 29 100.0 35 ............................. GGGTCTTTTATCTTACTTGTAAGTGTACTTCTTGG 36155 29 100.0 36 ............................. CTACAATTTGTTTCTTTACTAATGTATAACTACCTA 36220 29 100.0 37 ............................. GCTCTTACAGCGCCTTCTGCTATATTATAAGTACTAT 36286 29 100.0 36 ............................. GCGGTTATAGCTGATGCTATAGTAGATGTGAATGGT 36351 29 100.0 37 ............................. AATACTGCCCTCGTCATATTGAGATATAATTGCCCGC 36417 29 100.0 36 ............................. ATAAAAAATTGAGGTATCAACTTAGTTGCTTCTATA 36482 29 100.0 37 ............................. ATGTATGTGTAAGCTACTCCAATTTTTTTACCTAATG 36548 29 100.0 37 ............................. TGATTTGGTTGGTCTGGTTTTGCTGGTATATTTCCAC 36614 29 96.6 38 ..........T.................. GCTTCTGCTCTTGCTATTGCATTATATATACCACTCTT 36681 29 100.0 37 ............................. TTAGAATTTTTCAAACTATTTTCTAAATCATCGTATT 36747 29 89.7 0 ................A.....CG..... | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 99.0 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : AATGATATGTTAAATAATGATACAATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTAATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACATTTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTCGTTACAAGTTATAGTTATAATGATAAACTAGGTCTGATATTTGATTAGATTTTTAATTAAATCTTGATTGTTAAGAGAATTATAATATAAATAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCTATTACAAGTTTTATATGTTATAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTGAATGTCTGTGAGATAGTGATGGCAAGGTTTATAACTGTATTTTTATTTTTAGCTAAAAACACTACTGGTGGCTCACTGCAAATTACTTATTTTAATAACCCTACAAGTGTTGGAATTACTATAGTTTTATTTGGG # Right flank : TTTACCTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAAGTATCAATAATTTTGGAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAATAACTAAAAAAATTGCTTCAACATCATAACCAAATAGCTATATACCTATATTTACAAAAATCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTATCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAATAATCTAAATAAAAATACAATACTAGGAGAGGTCATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAATATATTAAAAAATAAAAACAAAGAATATTGAATTAAAAAAATATAGCTCAAAAGAAGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //