Array 1 108096-106192 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHY01000004.1 Salmonella enterica strain BCW_5871 NODE_4_length_170523_cov_1.99043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108095 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108034 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107973 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107912 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107851 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107790 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107729 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107667 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107606 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107545 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107484 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107423 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107362 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107301 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107240 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107179 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107118 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107057 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106996 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106935 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106873 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106770 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106709 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106648 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106587 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106526 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106465 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106404 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106343 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106282 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106221 29 96.6 0 A............................ | A [106194] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125659-124227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHY01000004.1 Salmonella enterica strain BCW_5871 NODE_4_length_170523_cov_1.99043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125658 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125597 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125536 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125475 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125414 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125353 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125292 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125231 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125170 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125109 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125048 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124987 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124926 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124865 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124804 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124743 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124681 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124620 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124559 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124498 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124437 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124376 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124315 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124254 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //