Array 1 109786-108106 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHO01000005.1 Salmonella enterica subsp. enterica serovar 6,7:k:- strain BCW_2092 NODE_5_length_355702_cov_3.75753, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109785 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109724 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109663 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109602 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 109541 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 109480 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 109419 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109358 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109297 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109236 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 109175 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 109114 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 109052 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108990 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108929 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108868 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108807 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108746 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108685 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108624 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108563 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108501 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108440 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108379 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108318 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108257 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108196 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108135 29 93.1 0 A..............A............. | A [108108] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127143-125956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHO01000005.1 Salmonella enterica subsp. enterica serovar 6,7:k:- strain BCW_2092 NODE_5_length_355702_cov_3.75753, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127142 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 127081 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 127020 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126959 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126898 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126837 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126776 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126715 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126654 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126593 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126532 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126471 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126410 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126349 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 126288 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 126227 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 126166 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 126105 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 126044 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125983 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //