Array 1 1-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000013.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACCTCGTTGACTGTTCGGCTGAGTGGCCTAAC 62 29 100.0 32 ............................. ATAATCCTGATGGCCCGATACGACTACTGAAA 123 29 100.0 32 ............................. CGCGTGATGTCCAATCTGCGCGTTGCCATGCC 184 29 100.0 32 ............................. CGATGACTTTACGGTGTACCTCCTTGCTAAAA 245 29 100.0 32 ............................. CACGTATGCGTTACTGTCGTCAGGTGACGCAG 306 29 100.0 32 ............................. AGCTAATGGCGAAAACGCCAATACGCCGCCGA 367 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCAGCGGGGATAAACCGAGATGGTGTTGTAGTAGATTTTGATGAACATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTATGTAGATCTTGCCATGTCGCAGCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAATGCCTCGATCAGAGTTGACTTACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTAGCGGTAACGTTCCCCTGTACCCACATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCTCGAATCATGGGTAAACGATATGCTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATCAGATAATGCGTTTCGCGTTCGTCGCAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATCATCCATCTTGTATCCCTTATTATAAAAGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 510-1453 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000013.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 510 29 100.0 32 ............................. TCTTATGTAGATCTTGCCATGTCGCAGCATCC 571 29 100.0 32 ............................. TCAATGCCTCGATCAGAGTTGACTTACCGCCA 632 29 100.0 32 ............................. CCTAGCGGTAACGTTCCCCTGTACCCACATCA 693 29 100.0 32 ............................. AGCTCGAATCATGGGTAAACGATATGCTTCAG 754 29 100.0 32 ............................. AATCAGATAATGCGTTTCGCGTTCGTCGCAAT 815 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 876 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 937 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 998 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 1059 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 1120 29 100.0 32 ............................. CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 1181 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 1242 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 1303 29 100.0 32 ............................. CATGACGCAGTAGTTGTTATTAACAGGGGTAC 1364 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 1425 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGACCTCGTTGACTGTTCGGCTGAGTGGCCTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATAATCCTGATGGCCCGATACGACTACTGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGTGATGTCCAATCTGCGCGTTGCCATGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATGACTTTACGGTGTACCTCCTTGCTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGTATGCGTTACTGTCGTCAGGTGACGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCTAATGGCGAAAACGCCAATACGCCGCCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCAGCGGGGATAAACCGAGATGGTGTTGTAGTAGATTTTGATGAACATA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3650-5142 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000013.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3650 29 100.0 32 ............................. CAAGCCAGTGAGACCGATCGGCGTTATTGAGG 3711 29 100.0 32 ............................. GTCATTGCCTGCGGGGGTATTATGAATAAACC 3772 29 100.0 32 ............................. CGAACGATCCCTCAAAACTCGCTGATGTGGAT 3833 29 100.0 32 ............................. AGGCCAGGCTAAAGGCGGTGGAAAGCAAAAAG 3894 29 100.0 32 ............................. CAAAACGCCATTAATTTTATCCGGCAGTTACC 3955 29 100.0 32 ............................. CAGATGGTTGGTACCAAACCACCAGCCGCAAG 4016 29 100.0 32 ............................. TGGCAGCCGGTCACAATATCACTGTCACAACG 4077 29 100.0 32 ............................. TGACAGTAAGTCAGATTGAGCAAAAAACTGGC 4138 29 100.0 32 ............................. TCTGATTTGTTCATGGAATTTACCCGTTAATG 4199 29 100.0 32 ............................. TTTTTACCGTGGGTAAATATCCGTATATGTCA 4260 29 100.0 32 ............................. GTTATCTCTGTAAAGCCGCTTAACGATTCAGG 4321 29 100.0 32 ............................. GTGTAGCGTATCATTTTGACCCCCGCTATCAT 4382 29 100.0 32 ............................. CCATTGCACTTTCTCCGGGCATTAAAAAACCC 4443 29 100.0 32 ............................. CACGGGCATTGCGCGCCGCGTTCTTTCACTAG 4504 29 100.0 32 ............................. ACCTGTCGATTGACCAGATACCGAAATTTCTG 4565 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 4626 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 4687 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 4748 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 4809 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 4870 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 4931 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 4992 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 5053 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 5114 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GCCGTATGGCTCTAAATTCCCAACGTTGGAAGAGTGTTCCCCGCGCCAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGGGACGGCGTTTTTTCATCGCGCCCCCACTGTGTTCCCCGCGCCAGCGGGGATAAACTGGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102589-103518 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000009.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102589 28 100.0 32 ............................ CATAACACCATGCTCTATCAGGGTGTGAGCAA 102649 28 100.0 32 ............................ TTGGGCAATAAATCTTTTATGGGTGGCATTTT 102709 28 100.0 32 ............................ GCAGCGCGCTACCTGTTTGTCTTTGGCGTATT 102769 28 100.0 33 ............................ GTCAACGGGGTGCCAGCGCGAAAGCGAGTATCA 102830 28 100.0 32 ............................ TGACCGATGATCTGGCCCGGCAAGTCGGAGTT 102890 28 100.0 32 ............................ AGTTGAGATACATCTCAGCGGAATCAGGTTTA 102950 28 100.0 32 ............................ CGCTATCGTCCAAAGATTTTGGTGAATGAAGA 103010 28 100.0 32 ............................ ACGATTAAACAGATACTGAGCGGCTGGCGTTC 103070 28 100.0 32 ............................ ATAATGGCAACACATATCAAGTTGATGCCCGA 103130 28 100.0 32 ............................ GTCATGGATGGATAAAGACGAACCGGCCAAAT 103190 28 100.0 32 ............................ GGGGCCAGCCTCTGCGGAGTTGACGATAAAGT 103250 28 100.0 32 ............................ GCCAGCAGTTAACCCTAAAATATGAGCAACAT 103310 28 100.0 32 ............................ TGCTGATATTGTCAGGCTGCGTCAGCGACCGG 103370 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGTAGCGACGA 103430 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 103491 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 111653-109943 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000009.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111652 28 100.0 32 ............................ GCGCAACATTGCGCTGAATTACATCGTGAGAG 111592 28 100.0 32 ............................ TGCTAACGTTTTCACGCCTGAACTGAACAGCT 111532 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 111472 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 111412 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 111352 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 111292 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 111232 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 111172 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 111112 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 111052 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 110992 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 110931 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 110871 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 110811 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 110750 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 110690 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 110630 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 110570 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 110510 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 110450 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 110390 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 110330 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 110270 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 110210 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 110150 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 110090 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 110030 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 109970 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGGGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 120610-121056 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBQ01000009.1 Pectobacterium versatile strain A69-S13-O15 Pectobacterium_sp._A69-S13-O15_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120610 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 120670 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 120730 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 120790 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 120850 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 120910 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 120970 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 121030 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : GCTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGTGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //