Array 1 1169220-1166276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKPR01000011.1 Listeria monocytogenes strain NRRL B-33816 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1169219 29 100.0 34 ............................. TGGCAAGTAGTACTACAGTGCCCCAGAATACAAC 1169156 29 100.0 35 ............................. AAAAGAGAAAAAAGAAAATGTGCAAAGTGTATTGC 1169092 29 100.0 38 ............................. TTGTTCTTTACCTCTGTATTTTGCGCAGTTTCAGCTTC 1169025 29 100.0 37 ............................. TTAGAATATGGGTTCCCTTGTTTTATTAAGAATACTC 1168959 29 100.0 36 ............................. TCCTTCGTGTCATCTTCCTCATTAACTTCTTGTTGT 1168894 29 100.0 36 ............................. AACATAACAATTTGTTTTAAATCTGATAGTAGTTCT 1168829 29 100.0 36 ............................. TAATTGCTTTTTTATTGTTCTTCCAAATCGCTACAT 1168764 29 100.0 36 ............................. TTTTCTTAAAACGGATGAAGTCTTTGATTTGCCATT 1168699 29 100.0 35 ............................. ACTGCATTTATTAAACAATGTACAAGTTGAATTAA 1168635 29 100.0 36 ............................. GCATATGAAGATACGGAGGTTGATTTAGTCCGAAGT 1168570 29 100.0 34 ............................. GTAGAAGTTTGTTTTGCTACAAGTCGATATTGAG 1168507 29 100.0 35 ............................. CAAATACAAGCGTCTCCATCAACAATAGCGTTGCC 1168443 29 100.0 37 ............................. TTGTCCGTGTTTCATTCCGTTCCCTCCAATAATTCCG 1168377 29 100.0 36 ............................. CTGCTCAAAACGCGTCGGATTTAATTTTTGTAGAAA 1168312 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 1168248 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1168184 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 1168119 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 1168054 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1167988 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 1167923 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 1167859 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 1167794 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 1167729 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 1167663 29 100.0 35 ............................. TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT 1167599 29 100.0 36 ............................. CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA 1167534 29 100.0 37 ............................. ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA 1167468 29 100.0 35 ............................. AATATAATCATGTAGGCCCATCTAAATTGCTCGAC 1167404 29 100.0 37 ............................. TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT 1167338 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 1167273 29 100.0 35 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGA 1167209 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 1167143 29 100.0 36 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAAC 1167078 28 96.6 34 ......-...................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 1167016 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 1166951 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 1166884 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 1166822 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 1166759 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCAAGGTCAAATAT 1166694 29 100.0 35 ............................. CAAAGAATGAGAATTTCACAAGTTGAAGAACTTTC 1166630 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 1166565 29 96.6 36 ..........A.................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1166500 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 1166434 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1166368 29 96.6 34 .......................A..... TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT 1166305 29 93.1 0 .......................C....C | A [1166280] ========== ====== ====== ====== ============================= ====================================== ================== 46 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGT # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1187457-1186717 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKPR01000011.1 Listeria monocytogenes strain NRRL B-33816 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1187456 29 100.0 38 ............................. TATTTTCGCTTCCTTTATTCCTTTTTTAGTATCACAAC 1187389 29 100.0 34 ............................. TTATTGAAAAAGTGAAAGTCAATACCGGACTCGC 1187326 29 100.0 35 ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 1187262 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 1187197 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 1187133 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1187070 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTTTAT 1187006 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 1186941 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 1186877 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 1186811 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1186787] 1186745 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //