Array 1 71555-69511 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJSY01000016.1 Shewanella chilikensis strain JC5 Ga0191653_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71554 29 100.0 32 ............................. CGCTCCAGTGCTAGAATTAAACCAGTAAATAT 71493 29 100.0 32 ............................. CCCGCTTGTGTGGCCTGTACTGGTTCCCAGCC 71432 29 100.0 32 ............................. GAGGCCAATTATGGCTGATATTTTTGCTGCTG 71371 29 100.0 32 ............................. CCGATACGGCCGCGGATAAACACCACGCGATC 71310 29 100.0 32 ............................. GAGAAACAAATGTCCATTTCAATATTGCAGGT 71249 29 100.0 32 ............................. CGAGAGAGTCTGCTGCGGTTTGGTGAAATCAG 71188 29 100.0 32 ............................. TTCGCGGGCTTTTTTGTGCCGCCTAAAATAAA 71127 29 100.0 32 ............................. GCGACAATTCGAGGCAGAGCGCAACGCTTTGA 71066 29 100.0 32 ............................. CACCAGGCCATTGATGACGGCGCCCAGATAGA 71005 29 100.0 32 ............................. GCTCGTGACCTGGTCTCTATCAGCTACATAGT 70944 29 100.0 32 ............................. CCATGGTCGATGAGTTTGGCGACCAAGTGCAG 70883 29 100.0 32 ............................. GCCATGGTTCAGGTCGAAATTGACCGTGTTGC 70822 29 100.0 33 ............................. GCTGAAAACGTAGCTCACCGCAAGGCTGTAAAC 70760 29 100.0 33 ............................. TTCGGTGTGTTGTTTCAGCCCGTACCTATCCGC 70698 29 100.0 32 ............................. GCTCCAGGCTATGGCCGTTTTCAGCTTGAATT 70637 29 100.0 32 ............................. GTCTTCTGCTGTCGGCTTATCAGGCAGACGGA 70576 29 100.0 32 ............................. TATTGCATAGGCAACCCAGTGATTAAGTGGAT 70515 29 100.0 32 ............................. GTGACATCATGGCGGAGCATCGCCGCAACGTG 70454 29 100.0 32 ............................. GGTGCCGGCAAGATGTTCCGGCCGCTTGATAT 70393 29 100.0 32 ............................. GCTTTATCGAACATACCTGCCCCTTATTTTTT 70332 29 100.0 32 ............................. CTGCTGCTATCGAATCAGGTTACGATGCGGGT 70271 29 100.0 32 ............................. CGCAAACAAAGTTGCAACAATGCCAGCTGCAT 70210 29 100.0 32 ............................. CTGAAACAGGATGTAGTAAATCCATATCAACA 70149 29 100.0 32 ............................. GATGTATTTATACAGCAATAGCCGTTGTTAGA 70088 29 100.0 32 ............................. CCGAATTGCTGGCAGTCGCCGCGGCTGAGACC 70027 29 96.6 32 ............................C TTTAGATCTTTTATCTAAATCTAGATGTCCTA 69966 29 100.0 32 ............................. CCTGTTTATTTTTCGGAACATCGAATGAAGAT 69905 29 100.0 32 ............................. CCTCGCGTCATACGCCAATGTGGACGTGACGA 69844 29 100.0 32 ............................. CGTAATTGGGGGTGATAAGTGGCCGGATTAAT 69783 29 100.0 32 ............................. TACCACGAAGATGGCCGCTTCAACGAGCTACC 69722 29 96.6 32 ............................T CCGGGAATAGCGCCCTGCTTGGCATAGGTTGA 69661 29 100.0 32 ............................. ATGCTTGACGATCTTCTGACGCCGTTCGGAGA 69600 29 100.0 32 ............................. TAACGGGTTCATTACAGTTGCTAGCTATAGTC 69539 29 89.7 0 ............T.............GT. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGTCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //