Array 1 698087-699902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072333.1 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 698087 47 100.0 30 ............................................... CTCGGTGGCTTCGGGCAGCATAGCCTACGG 698164 47 100.0 30 ............................................... ACCCTCCCAGCGCTTGCGGATGCGATAGAA 698241 47 100.0 30 ............................................... TGTAGGTAGGTCGCTCTCAGCGTGGTGTTC 698318 47 100.0 30 ............................................... AACTGAGTTGGCGAGACAAGCAGGCGTGAC 698395 47 100.0 30 ............................................... TGTATCGAGCGCCGCAAGTACCTCTGTCTC 698472 47 100.0 30 ............................................... GCAGCACCAACAGAGCAGACTTATTGATGC 698549 47 100.0 30 ............................................... TCAAGGAGGAGACGCACCGCAAGCTCACGG 698626 47 100.0 30 ............................................... ATATCTATTATACTTATCCTCTCTGTTTGA 698703 47 100.0 30 ............................................... ATCGATGGTGCGATGTGTGGTAACAACATC 698780 47 100.0 30 ............................................... AAATGGGCGGATAGCTTGGGCGTAGACCTC 698857 47 100.0 29 ............................................... ATCCATAAGGATAGGCGTGGCGTAGCATA 698933 47 100.0 30 ............................................... CGCAAGCCAACGATAGTGCAGCTCAAAGAT 699010 47 100.0 30 ............................................... ACTCCGTCCAGACGGTGATGCTGTTCGTCC 699087 47 100.0 30 ............................................... AATATCACCTAACACGATGAGTAAAGATTC 699164 47 100.0 30 ............................................... TTCCTGTTGAAAGGAGCTACAACCTTCTGA 699241 47 100.0 30 ............................................... CCCAGCGGGTGGCGATCTCCAAGCGCGGAT 699318 47 100.0 30 ............................................... GGCGCAATCAGGGTAGTGCTCGGTGATTTC 699395 47 100.0 29 ............................................... AAAAGAACGTGCGCTTACGGCGATCCTTG 699471 47 100.0 30 ............................................... ACGACGGCCAACACTGACCACGGCGAGACA 699548 47 100.0 30 ............................................... GAGGTCGTAAGTGTGAATTACGGCCTCCAT 699625 47 100.0 30 ............................................... TAGCATGATGTGGTTGTAGCTATGGATGGA 699702 47 100.0 30 ............................................... TACGATGCCGTCAGCCTCTACGTCGAGGAG 699779 47 100.0 30 ............................................... TGCTGGAGGCCGTCTTTGGTAGAGCGGTTG 699856 47 95.7 0 ....................A.........................G | ========== ====== ====== ====== =============================================== ============================== ================== 24 47 99.8 30 GTTGGATCGCTACTGCGAAGGTACATAAACGGGAAGCCAATCACAAC # Left flank : GCAGCAGTGCTTCGCTGGCAAGCTTCGTACTCTAGCTTATCCATTACTGCGATGCGACGACGTAGACTAAGTGAATATCGTATTATGTGGGTGTTTGTTCTCTTCGATCTCCCGACCTATACTGCCTCCGAGCGTAAGGCGGCCTCCGGCTTTAGACGCGAACTGCTCAAGGATGGCTTCATCATGTTCCAGTACTCGGTTTATATACGACATTGCTCCAGTGTGGAGAATGCTGCCGTACATATTCGTCGAGTCAAGAATATGCTTCCAGAGGAAGGGGAGGTCATTATCATGCAGGTCACAGATAAGCAGTTTGGAATGATCGAGCATTTTTCCTCGCATCAGATTGGGCCGACTCCCGCCCCCTCTCCCACCGTAGAGATGCTTTAGGCTCAGAAAAAATGGGCCTAAACGAGAAAAAGCCAGTGGTCACCCACTGGCTTTTTCTTTCTTCGCATTCCTTGCTAAGTAGCTGGTCCTATTCGATTTGTTGAGGTCGT # Right flank : GCACCAGTAGGCGTCCACCTTGCGCCTCGAGTCGGATTGCTACTACGAAGGAGTATAAATGATTCGAATCTAAGGCTTGAGCTTTGGTGTTCTCAGCGGATAGATGGGTATGTCTCTGCTCTATCGGCTGATAATCCTCACATGTGTAAGCATACATGCCTTGCTGGCATTGACGGGTATCCTTGGGCGCGCTGACAGATATCCTTCAGACGGCTGACAGGCATCACTGAGAGCGCCGACTGATATCCTTCAATGAGCTGAGGTACTGGTCGCAGATCAAGGCCGCTAGTGAGGTGACTTAGCGTACTGGAAGTTTGGAGAGAAGGTACTGACCCAATATAGGGAGATTAGCTTCCCCGTTAATGTGTCTTCACAGCAGCGATACAACTCCTCGAGTATAGTTGCTCGTGGATTCCCCCTTGTTATTGGCTTTCAGTTTGTGCGGGACTTCGGTGCGGCTTCCCCTCAGTATTTGTATCTTTGCTCTAGGCGCGTGCTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCGCTACTGCGAAGGTACATAAACGGGAAGCCAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1833522-1835183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072333.1 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1833522 47 100.0 30 ............................................... AGTACGTGCCATCAGCGTTGAAGGTCGCAT 1833599 47 100.0 30 ............................................... TGGTCGGTCGTACCTTCTGGGTAGCTGTAC 1833676 47 100.0 30 ............................................... TGCCCGAATGCGTCAGTATGCACAGCATCG 1833753 47 100.0 30 ............................................... AGCATGAAGCATTCTATACTCTTTGACTTC 1833830 47 100.0 30 ............................................... TGCATCTCAGCCCTCCTCTTCGCTCTCTCC 1833907 47 100.0 30 ............................................... GACCTTGACGATGGCGAGATTGGCGGGCGC 1833984 47 100.0 30 ............................................... GCGTCCTTGTAGATGTCATCCATGATAAGC 1834061 47 100.0 30 ............................................... CAGAACGATCCTCGCCCGAGCTGCCTCACG 1834138 47 100.0 30 ............................................... AGTAGGTCGCTCGCTTTCAGCGTGGTGTTC 1834215 47 100.0 30 ............................................... CTCGTTAACAAACAGGACGTCTCGCTTGCG 1834292 47 97.9 30 ..............................A................ CCCAGGAAGTACGAGTCTTCCGAGGCCTAT 1834369 47 100.0 29 ............................................... GCTGACCATCCTTGCCTACCTAGTGCAGA 1834445 47 100.0 30 ............................................... AAGTAGATTCGTTTGACCGATAGGGACGGG 1834522 47 100.0 30 ............................................... GTCAAGTCTGCATCTATTGAGTTTAAGGGG 1834599 47 100.0 30 ............................................... CGCTGTGAAAGCCTTTCGCCACAGCGTTAG 1834676 47 100.0 30 ............................................... CCTTATGCGTCGATTACAGGCTCTCCGATG 1834753 47 100.0 30 ............................................... AGCTTGCGGATAATCGATTCCCTTGTCTTT 1834830 47 100.0 30 ............................................... CGATGAAACTTGCTGATAGTGACTTCTTCA 1834907 47 100.0 30 ............................................... GATTCGGATGGCATCCTTAGCAGACCCAAG 1834984 47 100.0 30 ............................................... AGCGGTCGCGAGTACGAGTGGCGCAACATC 1835061 47 100.0 30 ............................................... TGACCTGAGGCGGCGTATCCTCTGAAATAA 1835138 46 89.4 0 .....................C.......T...-..G.......C.. | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 99.4 30 GTTGGATTGCAACTGCGAAGGTACATAAACGGGAAGCCAATCACAAC # Left flank : CCCGACTGTAGCCCTTGAGGCTATCCAGCAGCATAGGTCGTACAGAGAATCCTAGCTTCATCTACTTCCGTCTATATATGATCATGAGGACTACAAAGATACGAAGAGCAGGGCGCATCACCCAGCCCTAGCCTCAGCCCGCCGTCAGGACTCTCTCCCCAAGTACAAGCACGAAGGCAAGGAGGCTACCACACCTCACACGGAGTCTTCTCCTTACACACTCCCTCCAAGGCTTGCACGTATCAGGGGGCATCGCCTATACCACACTCAAGCTACGGCAGACGGAAGGTCAACGGGCTTCGGCAAAAGGCTCCATGGTATCCTGCATGCCCTGCTAGGCTCCAAGTAAGGTCCTAGCCGACCTCCCCGTCTCCCACCAGAACAGCCCTTGGGCGCAAAAAATGAGCCCATACACGAAAAAGCCAGTGGTCACCCACTGGCTTTTTCTTTCTTCGCATCCCTTAATAAGTAGCTGTCCCCAATAGACTTACAGAGGTCGC # Right flank : CCTAGACCTTGGCGAGCGCGGAACGGGGAGGCCGAGGAGGGGTACGAGGGAGAGAGGCGGCAGGGACACAAGGACCGCCCCCGCGGAGCGGCTGCTAGGCAGCGGCGCTTCGCGGGGGCGTTCGTCGTTAGGGATGCTGAGGCAAGGGAGACGCCTCGACCCTGAGGGAGAGGCTATGTGGCCTCAGCAGAAGGCTGAGGCGACGGAGCCTCACGGGGCGGCGAGGGGCTTACTTCACCTCGCCCTTGATGCGGAGGGTGAAGCCGCCGTCCTTGCCGTTGCTGTAGACGGCGATATTCTTGTAGAAGGGGCCGGGGCGGCCTGCGGGGTTGTAGGTCACGACGACCTTGCCCTCCTTGCCTGGGGCGATGGGCTCGCGGGTATGCTCGGGCGTGGTGCAGGAGCAGGGTGTGGAGACGCGCGTGATGATCAGCGGGGCGTCGCCGATATTTTTGATGATAAAGGTATGCGAGACCTTACCATTAGCCTCCAGGATCGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTGCAACTGCGAAGGTACATAAACGGGAAGCCAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2007712-2007479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072333.1 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2007711 32 100.0 35 ................................ TCGATAGCAAAGGCGGCTCTGATGGAACGCGTTGA 2007644 32 100.0 35 ................................ GTCGGCTGTTCCACCCTCGATGCGCTGCGCCTCCT 2007577 32 100.0 34 ................................ GGCGCAAGCTCATCCCCTCCATCAAGTACGCCAA 2007511 31 87.5 0 .....A.T.-......A............... | T,C [2007499,2007509] ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.9 35 GACTAGGCACGCGTGCGCGCACAAAAAGGCAG # Left flank : AAAGATAACTAATCCATAGCGTACAGCCCGAAGGCCGTGTGGCAGGTAGTCGAATAAGGATCAGGAGCTAAGCGCCACGGCTAGAGCCCCCGCTCCTCTCCCAGGGACGAGTCCCATCGCGAGCGCCCTTGCTGCCTCCGCCCTGAGCCTCGGGGGCTAGCTCAGAGCAGAGCCCCGAGCGCCGCCCCCAAGGCCTCCCATGAGGCCTATGGAGGTGGCTGCGTACGGCTAGAGCTAAGGAGGAGCTCCGTGAGGGATATCCTAGAGGTCGCCTCACTGATATCCCTCACACTCCTCACGGACGTCCCTCAGCCCGCCTCACTGATATCCCTCGGCTGCCCTTCCCCTTGCCCCAAACCGCAAGGGGGGACGTCCCTCGTGCGCTCTGCTTCCTTGGGAGGATAGCTGTGTCGGGCTTGTCCCGTGGAGCGGCAACACAGGAAGGGCGCCGCTAGGTCGGCGCGTGTGCTGCGCCCTCCCTTTGCTTCGCTATCCTAATA # Right flank : GGCAGGACTCCGAGACGGAGCCCTGCCCTGCGGTAGCTTGGGGGAAGCTCTATGAAGAGCCGCCCTAGTAGTCGGGGTTGTTTTTGCCGAAGTTGGGGTTGCGGTCAAGGACAGCCTGCGGGATGGGTAGGTAGCGGTGATGGGGCTTGAAGCTGCGGTCCTCGACCTTCTTCTCTGCTGCCGTGGCGCTGACCTTGATCGTGGCGCGCATCGTGGGGTCGGAGATGCGGCTGTCGACGGTGCCGACCACACGCTCCAGCGGAGCGTTGAGGACGTGCTCGGCCAGCATCTTGCCATCGCTGCCCTTCCAGCGGATGATGTCCATACGGCGGAAGCCTTCGCCAGCGAGCTCTACGGAGCGCTCGCGCTGGATGAGCTCGCGCAGCTTGTCCTTAGAGGCGTACTTGCTGCGATCGACGGCGGGCAAGCCAGCGCGGCGACGCACTTGGTCGAGGGCGCTGTAGACCTCGGCGGAGGGACCGCTCAGCTCGTTGCTCGCC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAGGCACGCGTGCGCGCACAAAAAGGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //