Array 1 881703-876733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046536.1 Acinetobacter baumannii strain XL380 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 881702 28 100.0 32 ............................ ATCGGACGACCTGTCAAAACATTTTGCTTATA 881642 28 100.0 32 ............................ CGTAAAGGCGTAGATGAAAACACAGCTTTGAA 881582 28 100.0 32 ............................ CAGCCCCAGTAAACAAAGACTTTGATTTAATT 881522 28 100.0 32 ............................ GCTGATGCAGTTGCAGAAAATAAGGTATTGGC 881462 28 100.0 32 ............................ AAACTGCGTGAGCTTCCTATCAAAAATATAGA 881402 28 100.0 32 ............................ AAGCTGTTCAGCAGCATGTGAAAGAATTTGAA 881342 28 100.0 32 ............................ AGCACAAAATTTATGGTATACAAAAGCAGCCA 881282 28 100.0 32 ............................ TCTGATGCGATTAATTCTTGAATGTTCTCGGC 881222 28 100.0 32 ............................ ATGTACATATGCTGTTTTAGCAATCATTGCTT 881162 28 100.0 32 ............................ TTATAGAAACTTTCCCATGCATCCTCATAATC 881102 28 100.0 32 ............................ TTAATGATACTACTCTCACCAATGCTGATTAC 881042 28 100.0 32 ............................ TAAAGGCGGTCATAGTGACCGCCCCATATCGT 880982 28 100.0 32 ............................ TCAACCTTTCTTTCTCTGGAGCAAATCGGTCA 880922 28 100.0 32 ............................ AGCAGAATGTCTTGAGGCAGCCCGCGAAAATC 880862 28 100.0 32 ............................ TCTATAACAGCAGGTGAATAGCCCTGCCCCTT 880802 28 100.0 32 ............................ AAGAAGAAAAAGGGGTTAAACCTGCCTACCCA 880742 28 100.0 32 ............................ TTCACATCTTTTCTTCTGCAACCATGGTAAAG 880682 28 100.0 32 ............................ TTCAAAAACGGCGTTTCTGCAATGATCGATGG 880622 28 100.0 32 ............................ AAGGATAATCAGCACAACATCCGGTTTTAGAT 880562 28 100.0 32 ............................ TATTGCGCCATCTGGGGCATGTTCTTTAATAA 880502 28 100.0 32 ............................ AGAAACTCGTAGCCTTACCAGAAACCTTATCT 880442 28 100.0 32 ............................ ATCCCAGTTGTAAGGAGGATGATCATGGATTT 880382 28 100.0 32 ............................ CAAAGCCCAGTTTGATTACGTCAAGGTCGAGC 880322 28 100.0 32 ............................ GGTAGTCATTTGTTCCAAGAAAAATGATTACA 880262 28 100.0 32 ............................ CCAGCCCGAACAAATGGCACAGCCGTTATTCC 880202 28 100.0 32 ............................ ATCAATCATTGCGGAAATCCCGTCTTTATAGG 880142 28 100.0 32 ............................ AAATACTGAGTTGATTCCTTCGCTTATGACAT 880082 28 100.0 33 ............................ TTAAAGCTGAAAAAGCATTATCAGATAATGCAC 880021 28 100.0 32 ............................ TTTATCCGGTTATCGCGATGCAGTTTATGAGC 879961 28 100.0 32 ............................ TGATCCCTCAATGTCAGTCTCACGATAGCTAA 879901 28 100.0 32 ............................ ACTAACGGCTGAACTGGTGGTCGACTAAGCAC 879841 28 100.0 32 ............................ ACTGTTGAACTGATTAGTGCATAACCGTCTGT 879781 28 100.0 32 ............................ TACGGGGGGAGTGTGGCGGGCGCAGTTTCGGC 879721 28 100.0 32 ............................ ACAAAGCTTGATGACATGGGAGCAACTGCAGC 879661 28 100.0 32 ............................ ACATGCGGTCCTCTGGTAAATCAATACCTGTG 879601 28 100.0 32 ............................ TTCATTGAGGTTATAAATATAACGAACTGTTT 879541 28 100.0 32 ............................ AATACCACTATTCGATGAAAACGCCTAGCCAA 879481 28 100.0 32 ............................ CAAGCCAACCTTTCTCTAAAGATGTTTGGTTC 879421 28 100.0 32 ............................ ATCTGGACCGCTACCATGTGCGAAACTTGAAA 879361 28 100.0 32 ............................ TATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 879301 28 100.0 32 ............................ ATGAGAGAGCGAATTTTTGCATTAGTCGATGT 879241 28 100.0 32 ............................ AATATGCGACAGATCTAAAAACGCTTGAGGAA 879181 28 92.9 32 ...AC....................... AGCAAAGTTTCAGGACAAAGTTATAGCGCAAT 879121 28 92.9 32 ...AC....................... TAGCTGTAACTAGGGGCACACATTCATAGGAG 879061 28 92.9 32 ...AC....................... ACGATCATCATTCAGAGAATTTCTTAAACCTG 879001 28 92.9 32 ...AC....................... AAAGCAGAAACAGCAGAACCCAGAATCTTTGT 878941 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 878881 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 878821 28 89.3 32 ....T.......AT.............. TTGTATTGTTGCTGACTTAAACCAATTCTTAC 878761 28 89.3 33 ....T.......AT.............. CTTGAGAAATTCCATTCTCTTTGGGTACAGGTA 878700 28 89.3 32 ....T.......AT.............. ACAATATAGATATGCTCAGCGTTTTGAACCGA 878640 28 89.3 32 ....T.......AT.............. TTTGTAACCACCAGTTAAAGTATTGACTAAAT 878580 28 89.3 33 ....T.......AT.............. TTTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 878519 28 89.3 32 ....T.......AT.............. ATTGAGAATCCAGTAGGCCGAATAGAAAAGCT 878459 28 89.3 32 ....T.......AT.............. TGTTTTGCTAATTTATCAATATCGATTTTCAC 878399 28 85.7 32 ...AC.......AT.............. ACAGGGGTCAAGTTCAGAAGATTTACGTTACA 878339 28 92.9 32 ...GC....................... GTCATAGTCCTTCTGAACACCAAATGTATAAG 878279 28 92.9 32 ...TC....................... GGTATTAGTGCGAATTGGCTTTTAGCCCACGC 878219 28 89.3 32 ....C.......GT.............. TTAAATGCTCAACTATTTCTGTAGCTAATGGA 878159 28 85.7 32 ...GC....T..A............... TTCAAATGATTTAATGAGCTTGTAGCCATTTT 878099 28 85.7 32 ...GC.......TT.............. ACGTCTTCTAATGATGGACTTTAATCCAATAT 878039 28 85.7 31 A..GA.......T............... ATCTCACTGAAGATATGACCATCACTTTCTT 877980 28 92.9 32 CG.......................... AAGCCATTTACTTTGATAAAGCGACACATAGC C [877975] 877919 28 89.3 32 ....T.......AT.............. AGCTTCAACACGTGTGCTATTAGGCGGCAAAG 877859 28 89.3 32 ....T.......AT.............. ATGAGCAAATTATCAATTGATCTATCTGCAAG 877799 28 96.4 32 ....T....................... TAGACGGTGTTACCTGTAGGCGGTGTCTACTG 877739 28 89.3 32 ...TC........T.............. ATCGTTTGAATAATATGGACAATCCAGCCAAT 877679 28 96.4 32 ............T............... GCAGCATCAAACGAGATATTGGCTAACATATT 877619 28 85.7 32 ...GT.....A..............C.. CAAATAGTTTTAGCTATCTGAGCATTTAATTT 877559 28 96.4 32 .............T.............. TTCATCACGTAGCCTTTTACACGCATCTTGCG 877499 28 85.7 51 ....T.......AT......C....... TGTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 877420 28 100.0 32 ............................ TATATATACTATTTTCTCCGTCATTTTCTTTT 877360 28 89.3 32 ...TC...................A... TGATAGTTCGGAGCATGTAAATCTCCAAAATG 877300 28 85.7 31 A..TA.......A............... CCAGTTTGCTGAAAATCACCAATACGGTCTT G [877275] 877240 28 89.3 32 ...TC......T................ GATTCTATGAGCGTGACCATGACTCTATTTAA 877180 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 877120 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 877060 28 82.1 32 ...GC......TGT.............. GATTCTATGAGCGTGACCATGACTCTATTTAA 877000 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 876940 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 876880 28 82.1 32 ...GC......TGT.............. CAACGACGACGCCGTGTGTTTGTTATCGGAAG 876820 28 85.7 32 ...GC....T..T............... CAAGTAGGATTTGCAGCCCCAATAGTCTTTAT 876760 28 82.1 0 .........T..A..A........AT.. | ========== ====== ====== ====== ============================ =================================================== ================== 83 28 94.9 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [80-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 887258-888062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046536.1 Acinetobacter baumannii strain XL380 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 887258 28 82.1 32 A.CTA.......T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT 887318 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 887378 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 887438 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 887498 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 887558 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 887618 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 887676 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 887736 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 887796 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 887856 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 887916 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 887975 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [887979] 888036 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 92.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTATGT # Right flank : ATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //