Array 1 555775-557103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041213.1 Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 555775 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 555841 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 555906 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 555970 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 556036 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [556048] 556104 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556169 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556234 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556300 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556364 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556429 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 556494 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 556559 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 556622 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 556685 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 556751 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 556814 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 556879 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 556945 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 557010 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 557074 29 93.1 0 .......................A....C | C [557097] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2760421-2757740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041213.1 Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2760420 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2760354 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2760288 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2760222 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2760156 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2760090 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2760024 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2759958 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2759892 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2759826 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2759760 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2759694 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2759628 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2759561 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2759495 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2759429 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2759363 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2759297 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2759231 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2759165 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2759099 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2759033 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2758967 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2758901 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2758835 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2758769 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2758703 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2758637 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2758571 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2758505 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2758439 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2758373 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2758307 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2758241 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2758175 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2758109 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2758043 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2757976 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2757910 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2757844 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2757778 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2757743,2757746,2757751] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //