Array 1 32528-30841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFEB010000019.1 Lachnoclostridium pacaense strain SL.2.13 ELILONED_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32527 32 100.0 36 ................................ CTGCTGCTGCCGCAGAAATTCCGATTGCGTTCGCTT 32459 32 100.0 36 ................................ GCTATGTGATACGCTATTACTTCCCCGGACTTGTCA 32391 32 100.0 35 ................................ CGTCTGGCAAGGTATATATTTTCACTTCCATTCTG 32324 32 100.0 33 ................................ CTAGCAATATAGTATGAATATATATCAATCCTC 32259 32 100.0 34 ................................ AAGGTTGACATATCGGAACTTAAGGCGAACATAC 32193 32 100.0 34 ................................ GATGTAAGGAGGGAACGTCCAACATTTGCAGATA 32127 32 100.0 35 ................................ TGCCTGTATCTGGCTTGGTTCCTTCTGGCAGACGA 32060 32 100.0 34 ................................ CCTTGATGTCTCATACCGGACATATTATGTTGCT 31994 32 100.0 34 ................................ CTCAGAAAAGGAAAGGATGAGGATATCCCGCAGA 31928 32 100.0 33 ................................ AGTTCGTCCAGGGAGGTTTTGTCCTTTAAGTCA 31863 32 100.0 32 ................................ CTTGGTCAGGCCCATGTCCTCTAAAAATTTAC 31799 32 100.0 34 ................................ CAGGACGTAATCCGTGCTGTCCCCGAAGGTTATG 31733 32 100.0 33 ................................ AGATAATCAACCCATACCCCATCGCAATCATCA 31668 32 100.0 33 ................................ AACAAATCATTTACCTGTCTCTTCCACTCCTTC 31603 32 100.0 35 ................................ ATTTTAACCAGGCTCTTTGCCGTATCGACTGAAAA 31536 32 100.0 34 ................................ TTTTATCCGCTTCTGTTTTGGGTACCTTTGAATT 31470 32 96.9 33 ....................A........... CTGTACAGTGTCTTGTCCGCGCTGTAGTCAACG 31405 32 100.0 35 ................................ AACGGGACAGCGAAAAAATAGCAGCCTTGCAGCAG 31338 32 100.0 35 ................................ ATATTTCGCTTTTAAATCCTGGTACTCGTTTCGGG 31271 32 100.0 34 ................................ TATCAGCTTATCCGCTGTCTGCCGGTTGCTCTGC 31205 32 100.0 35 ................................ ATCAAGGTGGCATCTGCATCGGAGCTGGCGGAAAT 31138 32 100.0 33 ................................ TATAGAAACTTTGTTCCTATTTATAGGAAACAT 31073 32 100.0 34 ................................ AATCCATTAATTGCATCCGTGATACGTTTCTGTT 31007 32 100.0 34 ................................ CTTAGAAGATGCTATAAGGAAAAAGCAGTTAGAT 30941 32 100.0 34 ................................ TTTATAAAGTAGATCTTCATTCGTCCGCTTTATA 30875 31 84.4 0 ...............A....A.CC...-.... | C,A,AC [30844,30849,30854] ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Left flank : ATGTGTTAACTACGGAACCCGGGTCCAGAATTCCGTATTTGAATGTATATTGGATCCTGGCCAGTGCCTGATGCTGAAGTCGATACTGACGGATATCATAGATGAAAGCGTGGACAGCCTGAGGTTTTATTATCTTGGGAATCAAAATAAGGCAAAGGTGGAGCAGATAGGCGTCGGTAAAGGAATTAAGGTTGATGAGCCTTTGATTTTTTAGGGTATGTTTGAAAATTGCTTTCACGTCAGCAGGGTGTCCCCCTTTGGGGAAAATATACCGCGAAGCGGGGCGCCCAGATGGCAGATGGCGGGAATGAATTTTCAAGCAGGCCCTGGTGCGAATGGGAAGCGTACATGAAAATCCTGGGAGGTTCGCACCTGGAAAATTGGGAATAGAGGGCGTTATTTTGGATGGTACGAGTGGTTGGGGAGGCGATACGCGGTTGATGTAGGAAATTTTTGTGGAGATTGATGGGGGTAGGTATGATTGGTTGTGTAGAATTGCT # Right flank : CCCAGCAATTCCACACTAACAGCTTAAAAAATTAATCATAATTAAACGGCTCCGCCATAGCTGAATATACAGGGGCCTTTTTTATGATAACGGCAGAAACGTAACCTCCTATCAATATCAATAACATTCCAGGTAACTGCTTCAGAGGAGGTTAAAGGATTGTATCCCCAGGAGTGGCTGCTTCAAGGCCTTGGTTACCTCAATCCTGGTAACCTACAATCCAGCATCTTCCCATCTGAATTGATTTGTGCTCAGAAAGAAAAAACAGTATAATGAATTGAAAAATAAACCATGCAGTTATACGTAAGTAAACAGTACGGAATAAACTTATAAGGAGAAAGCCAATATGGATCATGGATACTTGGCACAGGAATCAGAACGTGTTAATAGGGCAACGAGGAAAATGTTTTACAAATTATTGATTGTGTTTGCCTGTGCCCTCGCAGTCATTTATTTTCTTGGAAAGGATTCCATCAATTTCAACAATATTTCCTATGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 41356-40581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFEB010000019.1 Lachnoclostridium pacaense strain SL.2.13 ELILONED_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 41355 33 100.0 38 ................................. TTTTCAAACCTCTGTGACAGCGTAGCAAGTGCGTTATC 41284 33 100.0 34 ................................. CGCATACCGGGCAATAATAGCTGTTAAGATACCC 41217 33 100.0 36 ................................. CATCATAGAAAGATTCTATGAACTTTACAAAAGTAG 41148 33 100.0 33 ................................. TTTTGACTACCCATACTTTGTCAGGATTAAAGA 41082 33 100.0 33 ................................. TATTATAATAGGAATTTTTATTTTGCTTTCAAT 41016 33 100.0 34 ................................. AAAATACATGTTTCGGCGCAAGGATGGTCTAGTC 40949 33 100.0 35 ................................. ATTAATGATGACATCGGATTCCTTTCCACCATACC 40881 33 100.0 34 ................................. CCTTCATCTGCAATGGGATGGCGATATGGTATAT 40814 33 100.0 34 ................................. CACCACGGGCGCAAGGGATTATCTTAAGTCCTGC 40747 33 100.0 33 ................................. TGCTCGGATATGTTTGATACATGCCCATATTTT 40681 33 100.0 35 ................................. AGCCATTGCCTGTCCTGCCACATTGAACCGGTTAA 40613 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 12 33 100.0 35 GTCGGCCTCTGTGATGAGGCTGTGGATTGAAAT # Left flank : GTTGAAGAATATGGGCCGGAAAAGATTCAGATGAAACGGTTGAATACGAACGGGAATGGGATGGCAGCCAATTGCCTCCAGGGAACGGGTAAAAGAAAACCCTGAAACAATATTTGGAGAGATATCTAACAGCATATATAGGAAATTTTTAAAAAATAAGTTATGGATAAATCGCCATACATATGTATGGTTCATAATCACAATCTTGAGAGATTGCTGTGGTTTTGGTCTGTATTACTTTATCGAGTCTTTTTAGTATTAGATATATCTTACAGTGTGAGGGCGATGGTGATTAAAGGAAGTATTGTCTTTTTGAACCAATTTTGCTTTGGTGCGAATGTCAAGTGCACATAAAAAGTCAGGAGATTCGCACCAGATAATTTTAGCAGCGTTTTGAGGAATATTGAAAAAATAGGATGATGGCTTGTATATGGTAAGAGAAAATGGTATAATTTAACAAAAAAGATGATGATTGCGTTATAAAAATAGGCATATTTGCT # Right flank : CATAGGACTATATGTTTTACAGATTTTAACCGCGTCAGTCTCTGCAAAGGCTATACCCCCCAAAATATAATTATCCATAAGAGAACTAATTACCACCATAATCAAACAGAAAGCGCTATAGACCACTACCACGATTGCCCCCAGCGTAAAATCTGCATACAAATAGCCTTAATTCAGTTCTCTTAAATACCATCATTATCATACGTAATAAATACCCACAATAAAATGCAGAAAGGAGGAGGCCTATATTATCTATCTAGCGCACATATCAGAAGATAAAACAACGGAGCAGAGTATCGCGTCCCATCTCATCGAAACCGCCGGATTAGCAGGGGATTTTGCACAGGCCTTTGGGTGCAGGGAATGGGGATATGGATGCGGATATCTTCATGACATTGGCAAGTATTCGGATAAGTTCCAGCAGCGTCTTCGGGGCGGGGCCATTACGGACCATGCCACGGCGGGGGCACGGGAATTATATGACAGGAAGAATTATATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCTCTGTGATGAGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 316811-318456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFEB010000003.1 Lachnoclostridium pacaense strain SL.2.13 ELILONED_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 316811 33 100.0 35 ................................. CAATGGCTGCCGTTGCGTAGTTTCGGCAGTCCAGC 316879 33 100.0 35 ................................. CTGCGCAGAAATAGGGTTTTCAAACTTTGCGTCTG 316947 33 100.0 33 ................................. GGAAAGCTGGGAACTGGTAACTGATTTACTGAA 317013 33 100.0 34 ................................. TGTTTCACCTCCCTGTTATGCTGCCACCAGTGCT 317080 33 100.0 35 ................................. TTTTATGTTTAAAGAATAGCAGTAACCGCTAAAAA 317148 33 100.0 34 ................................. AATTTCAAATCTGTCGTCCTGCGTATCTACGCCA 317215 33 100.0 35 ................................. TTAATCATCATGCGCGTTGTGATAAGTGCAGTAAA 317283 33 100.0 33 ................................. CTTACAATACTTATTATACTATAGATGATATTT 317349 33 100.0 33 ................................. ATTTATACGGCCTTTATAAAGAACTTTTTCACT 317415 33 100.0 33 ................................. TATAGGAGTGGAAGATTTTGGGGGAAGTTTGCC 317481 33 100.0 35 ................................. TCTATATCGTTTTTCCAATTTTTCACGATTGGAAA 317549 33 100.0 34 ................................. AGCCTCCTGGATGCCGGGTTCTCGCCGGAGCAGA 317616 33 100.0 36 ................................. CCAGACAGGACATAATCAAGGGAGGCCGTGCAGTCA 317685 33 100.0 34 ................................. TTTATGGTTTTTATCCTTGGGTTCATGGCGTTCG 317752 33 100.0 35 ................................. AAGAAGGAATACCGTGATTATTTTAAGTTACAGCG 317820 33 100.0 35 ................................. CATATCCCAATTATTCCCATACTATCCTTTCCACC 317888 33 100.0 34 ................................. TTTTGCCATAATCCTCCCGCAGTTGGGACACGGT 317955 33 100.0 35 ................................. ATAATCCATGCCATCATAGACAATCAAACTTACTC 318023 33 100.0 35 ................................. ACCTTCTAATAAACCCAAAGTATAAATATCCCCTA 318091 33 100.0 33 ................................. CATAAGTTCGGCGTTGAGACGGTACAGTTCCAG 318157 33 100.0 34 ................................. CCTGGGTCCAGGAACCAGTCGGCCACATGCCTGT 318224 33 100.0 34 ................................. CTATCACAATGTCGCTGATGGCCGTTCCGGCGCC 318291 33 100.0 34 ................................. GCCGGATACCACTTCGTGGTAAATCTTGGCAATT 318358 33 100.0 33 ................................. GTAAGATACATTAAACCCCAGTATAGTTTCAAG 318424 33 87.9 0 ................A........GC.T.... | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.5 34 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : TATAAAAATGGTCAACTTATCAGAGTATCAAAGATTATTCCAAAGTGGTATAAAAAGTGGCAGGAAGAGTGTCATTAACTTGACACAAGCCTGTGTGCAGTAAACATTTTAGACTTTTTATCTGGTGTTCGATATTAGAACCCTGAAAGGCATGGCGTATGATTCGTCATGCCTTTTCTTTTAATGGGTTTTCATGTATAATGATATGAAAGAAAGTATATATATGAATAAATATAGAATGATGGTATATAAAAACGGTATTATCGTAATTGAGAATAGAAAAATGGTGGGTGATAGAAGAGGGGAGAGTATATATTACTGTGAAATATAAAATCTCGGTGCGGATCATAAGTGCACATTAAAATACTGGGAGATTCGCACTGAAAAAGATACTGGGAAAGGCAGAGATGTTGGTTTGGTTGTGGAGTTGATAAGTAATTACTGTATATTATGTACAAATTAGTTTTGTTTATATGTAGGTGATTTTGGGTATGATTGCT # Right flank : TTACAAAGTCTCCATAACAATTCTTAGTACAAAAACTCACATTCCACAAAGGCCATACGCATTGAAACATTCACTTGTTATTCAAGCAATTAATATACATTGACAATTACATATTGATAGTCAATCGATTTTGAGGTATTCTGATATACAGGAATGCAGGAAATTGAAACAATGTATTGTAGTAGAAAGGAGCATATATGGTAAAACTGGACGGATTCATGGCACTACTGACTGGGAGTTTCAATAATAGGGAACAGTATGATACATTGCGGAAAGAGGAAAATGGTTTTCCCTATGCGGAGCACATCAATACGGTCTGCAATGATAAAATCAGCAATATACCACCAGAATTTCAGGGGAAATTCATGGTGGAGGAGAGCATTTACGAGGTAAACGGAAAACGGCATTCGTCTTCCCATCTGTTTCTGTTTACTGAGCAACCGGAAGGAATTTTGCTGACTTCTTATGATATCCCGGAGGGGAATGACAAAACGGTGTTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 325317-327773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFEB010000003.1 Lachnoclostridium pacaense strain SL.2.13 ELILONED_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 325317 33 100.0 34 ................................. AATGGAGCAACGCAACTTATAATTTGTAAATAGC 325384 33 100.0 35 ................................. CGGTGTGTGCCATCTTAAAACCATTCAGCAACTTT 325452 33 100.0 36 ................................. CGTAAACCGGAAGAGTTGGAAAGAATGAAAACAAAC 325521 33 100.0 33 ................................. GCTTCAAAGTCCCGTATTAGAGTACGGCATAAT 325587 33 100.0 33 ................................. ATAGAAGTAATCATAACCATAATCTTCTATTTC 325653 33 100.0 34 ................................. ATCCTCATTAAGCATGCACCACATTTTGGTGATA 325720 33 100.0 33 ................................. TTTAAGTGGAATATAATCCACATCATTAATTTT 325786 33 100.0 35 ................................. ATATACGCCAAAATACAGGGCTTAAATGTAGTGAC 325854 33 100.0 35 ................................. CCCTGGCGCGGAGCCGGAGGAACAACGGGAACAGC 325922 33 100.0 36 ................................. ACATCCTTCACGGGCTGGCTGATTGCTGATGATTTA 325991 33 100.0 34 ................................. CGGCTTATCTAAAGACCTTTGCGCTCCTGTTTGT 326058 33 100.0 33 ................................. AAATTAAACTATTGTATTAGTTGCAATATCATG 326124 33 100.0 34 ................................. ATAACCTCACGCCCATTGCCAGTGCCATGATTAC 326191 33 100.0 35 ................................. CCCCTAATATCCACTTATACGTGTCCATGTGCCAT 326259 33 100.0 35 ................................. TACTTCGTACAACTCCCCATACCCACCTAACTCAC 326327 33 100.0 34 ................................. AAATGTAAATAACATATTATTCCCCCTTTCTCAT 326394 33 100.0 35 ................................. ATTTTCTTTCCCCCATTCTACAATTTGGTCTGCTA 326462 33 100.0 34 ................................. TTTAAATAGTATGTCCGTTCAGTTTCATACTCTT 326529 33 100.0 33 ................................. TAAAAAACGGCTATTATCGTAGATATTTTGTGC 326595 33 100.0 35 ................................. TTTGTGCAACTTACATTTGCCCCAATATCTGGAAC 326663 33 100.0 34 ................................. CCCCATCAAATTTGAACAATACACAATACAAAAT 326730 33 100.0 34 ................................. CCGTTGTTTTTGAAACTCACATAGCAGAACCCAT 326797 33 100.0 34 ................................. TCCCCCAGGATCATGACATCCCCGGTCTCCCAGT 326864 33 100.0 37 ................................. GTCTGTGATTCAACGGATGGCCTGGTGGATGTGCAGT 326934 33 100.0 33 ................................. TTCATTGGCCTCCTTGTCCCTCTCCAGCTGCTC 327000 33 100.0 33 ................................. TTGAATCAGCAAGTAGTGAGCAACTTTCGCAGA 327066 33 100.0 34 ................................. CCCATCCCGCGTGTTCCGGGATGAAGTGGGGCGC 327133 33 100.0 35 ................................. GAGTAGAGCCTGCATTATGCCCAGCGCGGAAAATA 327201 33 100.0 35 ................................. TATGTAATAATGAACTTCACTGACCAGAGACATTA 327269 33 100.0 36 ................................. CTGTTATCCCGGATACCTTTAGCCAATCCCTGCATC 327338 33 100.0 34 ................................. ATTATAGCAAAAGATAGTGCAAATAGCTATGAGG 327405 33 100.0 35 ................................. TCAGCACCTGTTGCGTACTTATAATCCTTAATAGC 327473 33 100.0 34 ................................. ATCTAACAGCAATAGCTGCTCGGCGTCCGTCCAG 327540 33 100.0 34 ................................. AAGCGTTTTATTGCCGTTGGAAAAAGGCTATACA 327607 33 100.0 34 ................................. CACTGCTCGCTCGCACGTTTGAACCTATCCAATA 327674 33 100.0 34 ................................. AAAACTTGTATTGATATTTGCCTGGTCAAGAATT 327741 33 78.8 0 ............A.T....A.A.AA...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 37 33 99.4 34 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : GATATCCTTTTTATATAATGCTGTACTGAGGGAATGGAAGAAGATGGTTATAATGGGTTTAGAAGGTAATGTGGAAAATGCAGGATAAGGGAATTTGATTGCAGCAGGAGTGGGGGATTGTTGACTACATCAGTTTTTGGAGTGAATTAAGATGGTGAGTTGTGAGAATCGTAGGAATCTACTTATTTTTTAAAGCTGGCTTGGTTTTCTTTGAAATCAGATTAGCTTTTCTTTTGTGGAAAAATTTTGTATAATGTTATACAAAGTGGAGTTATTGTTTTATTGGAGAATAGAGAAGGAGTGGATGCAGAGGGTATGAATGTCAGGAAGCAGGTGATGGTGCGAATTATGAGTGCACATAAAATTCCTGGGGGATTCGCACCAATAAGGCAGGGCAGAAATTGAGGTTTTCTTTTTTAAAAGAGAATTTGTAAGAGGAATGTTATGCATTGTATATAATAATGTTTGTTGGAATTTTGTTTATGTTGGGTATTATTGCA # Right flank : TCCATCCAAGCTGTAAAGACCAAGAAAAAGCCAGAATCATCCCAATTAAGACAAATTAAAAAAACACCTCCATTCCCCACAGCTTATGAAACAGGCTTGTGGAGGATGGAGGCATTTTCATCCTATAAAGGTATCTCCCGCTGGGATTTTAATGGTGACCAGGGTGCCATCGTCAATGTTATAGTGAATGGAAGCGGCGCCCTTATAATATAATTGCAGTCTTTGGTAAACGTTCCTGATGCCGAAACCGAAGGATTCACTGTCATGTGCAAAACCGGAGTTTACCGCTTCCGCCAGGCTGGGGTTGAGAGGAAAACCGTTATTAAAGATCTGGAATATCAAAAATCCGTTTGCCAAGGTGCAGGTGATATGGATGTATCCTTGCTTGGGGTAGCCGCGGATGCCATGCAGGACCGCATTTTCAACAATGGGCTGGAGGATGATTTTTATGATGGAATATGTAAGGCATTCCGGCTGGCATTTGATTGTATAGAGGAAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 337987-342115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFEB010000003.1 Lachnoclostridium pacaense strain SL.2.13 ELILONED_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================== ================== 337987 32 81.8 83 .............T.TT...-.......T...G AAGCGTGCTGCGTGGGTCACAGCCTGCGAGGGCTGTCACAGCCTGCGAGTAATCATCATGCGCGTTGTGATAAGTGCAGTAAA C [338000] 338103 33 100.0 35 ................................. GCCAAATATCTGATCGCGGCGCACCACATCAAAGT 338171 33 100.0 35 ................................. AAAACGGCTCTGCTGTTTTTGATACGGCGCAAATA 338239 33 100.0 34 ................................. ATCCCAAGCAGCCTGTTTGACAACCCGGACCTGA 338306 33 100.0 35 ................................. ACGGAACCGGGTGCCAGTTACGGCCTGTCCAGTAA 338374 33 100.0 35 ................................. CCCCAGTTCTGGGCCATTGCCTCCGCCAGGCGGAT 338442 33 100.0 34 ................................. TTTAGTGGGGCTTATTAATAGGGGCGTTTGTTGA 338509 33 100.0 34 ................................. ATCCTCATATCAATCCATGAAATTACATAACAAA 338576 33 100.0 36 ................................. CATGGAATCACCCCCTGTGATACAATAGCCCAAATC 338645 33 100.0 35 ................................. CTTGAAACCCTCGAACTGTAACCCAATCCTGTTCC 338713 33 100.0 37 ................................. AAGGACCGCAACGAGGCCATCGTGTGGATGCTGCGTA 338783 33 100.0 33 ................................. TTTAGTGAGGCTTATTAATAGGGGCGTTTGTTG 338849 33 100.0 33 ................................. TTATGTAACAGCTCGTCATACTGTTTGATGAGT 338915 33 100.0 34 ................................. CACCTCAGTGATTTATTTTTTAGATTGATTATCA 338982 33 100.0 35 ................................. CATAGGTTGTATCATAATGTCACAATATTCAGTTC 339050 33 100.0 36 ................................. AATGTGGTATGTCTGCTCCGTATAAGGGAACCCTTG 339119 33 100.0 34 ................................. CACTATCCAAAGTATCAATGCCAACCAGAACCCA 339186 33 100.0 35 ................................. TGACATCCTGCGCAGGAAGCAGATATAGGTCTCCC 339254 33 100.0 35 ................................. TATAATCTTCGTTACATCCCATCGTGTACAATGAA 339322 33 100.0 33 ................................. CCACGGGGACATATCCCCTCGCCAATGATGTAT 339388 33 100.0 35 ................................. CTGTAAAATTGAGGATTGGAGGATATACCATGACA 339456 33 100.0 34 ................................. GTTACTGAACGAATCGGCATCACCTTTCCAGGAC 339523 33 100.0 35 ................................. AGAACCCCTTGTGCTGGCTGGTAGTCCGTCCATAC 339591 33 100.0 34 ................................. TCTCCCAGGGAAATTCCTGGCCAGGCCGGAGCCG 339658 33 100.0 35 ................................. TGTGATTTTTTCTTTTGCCTCTTCTAGGTCCTTGC 339726 33 100.0 33 ................................. TGTTCCATCCACCATTTAACCGCATATATCCGC 339792 33 100.0 34 ................................. TTACTAATATAGCAAATTACTTATATTTAACTTT 339859 33 100.0 36 ................................. TATCAATCAGTGCATCCTGTAGCACCTGGGAGAAGT 339928 33 100.0 35 ................................. CTTTCTCCCCTGGGAACCGCCAGGGGACGGTATCT 339996 33 100.0 34 ................................. AACCTGAATTTTGATAAGGCCATTGATGGCCTGG 340063 33 100.0 35 ................................. CTGCAGAGACTTGACATGCTTTGCAGACTCATCGG 340131 33 100.0 33 ................................. AAAACATATGTCGCGGCATATCAGGCTCTAATA 340197 33 100.0 35 ................................. GATATAATCAATCTGGAATACCAGTACAAATCAGG 340265 33 100.0 34 ................................. CAGAAATCCCAGACGGTATTCCTGGTTGGGCAGG 340332 33 100.0 35 ................................. TGCCCTGTAGTCCACAACCTGGTCCATGTCCATAT 340400 33 100.0 33 ................................. GGTATGTATGATTCCAATAATTTTCTTGTCAAA 340466 33 100.0 35 ................................. TAACTCAGTTTCAAAAGCCACCTTAGATATTACAC 340534 33 100.0 35 ................................. TCAATCCGCTTTTATCCGTGTGAAAAATCCTATAA 340602 33 100.0 34 ................................. CCCGACTGTTGTGGCGGCTAAGCCATATCTGACC 340669 33 100.0 34 ................................. AAAAAGCTGAGAACCTACCGCATATTTATCCACA 340736 33 100.0 34 ................................. ACTGGATACCAGACCGCAGCCATCACCCTGACGG 340803 33 100.0 35 ................................. TATCTATATTATAAAGCGAGGGGGCCTAAGTACCT 340871 33 100.0 33 ................................. GTATCAAAGTTATATGTCGGGGATTATATGAAT 340937 33 100.0 35 ................................. CGTAAAAGGGAACCGACAAGGAATGAAAGGGCTGA 341005 33 100.0 36 ................................. TTCATATAAACATCACTGTTTGGGGAATGATATTGT 341074 33 100.0 34 ................................. AGGATGTTTGCAATGCTACAGGCCTGGCAAGAAA 341141 33 100.0 33 ................................. TCCCGCAAGTATTGTGTTACTATGTACAAACCA 341207 33 100.0 35 ................................. CCTTGCAGGGATGACCACTTGTGCTACATACTTTT 341275 33 100.0 35 ................................. TCTAGAAGTTTAGTCATCACCTTATCAGCAAGGGC 341343 33 100.0 33 ................................. TGCATCATGAACAGCTTCACGCCCATGAGCAAG 341409 33 100.0 33 ................................. TGCATCATGAACAGCTTCACGCCCATGAGCAAG 341475 33 100.0 34 ................................. ATCAGTATAATCATCTTTATACAGTGTAACGTAG 341542 33 100.0 34 ................................. CTTTACGCAAATCAGAAACCAATAAAAGACAGGG 341609 33 100.0 35 ................................. TCCGAATTACCTGGAAAAATCCATGAATGGGTCAC 341677 33 100.0 34 ................................. TCTGAAATCGTTATAATACCATGCTTTCCATAAT 341744 33 100.0 33 ................................. TTCGTGGTATGGGTATACGCTTCATTTACCATG 341810 33 100.0 35 ................................. AAGTGTCATGAAAACATCCTATCTGCCCTCGTTAC 341878 33 93.9 35 .................T......A........ TCAAAAGGTGGAACGGTACGATATTACAAAATCGG 341946 33 97.0 35 .................T............... CATCCGTATCATCCCTGGATGCGAATACCCGGTAA 342014 33 100.0 36 ................................. AGTCACACCTGCGATATCCTCCAACCGCATTATTTT 342083 33 75.8 0 ..........T........AGA...T..T.TC. | ========== ====== ====== ====== ================================= =================================================================================== ================== 61 33 99.2 35 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : ATGATTCCGGGATAGGCAGAACATTCCCACAGGCTGAGCTTCTTCTCCCGGAACAGCTGGATGAAAGACTGTTAATGGGGCTAAAAGAAGCGTTTCATCGGTTAGATCCGGATGGGACTTTGTTTATATAAAGCATATGACAGGGACATGTAGCTTGGATTATGCATATGTCGTGTATGAGTCAGTGTTGGACTTTTCTTTTGTGGAAAAACCTTGTATAATATTTGTATGGAAATAGGTTTATTCTCAGCGGAAATGGGAAATTTTGGTATTCGGGAGTTGATGAAGAGGATATATAAATGTTAGAAAGCAAATGATGGTGCGAATCCTAAGTGAACATAAAATTACTGGGGGATTCGCACCCGGAATAGTAGGGTGGAAATTGAGGCGTTCTTTATTTTCATGAGAATTTGGAAATGGACTTTATGAATTATATGTAATAATGTTTGTTGGTATGAGGTTTTTGTTGAGCATAATTGCTGTCACAGCCTGCGAGGGCT # Right flank : TTGCAAAAGCCGCAAAATCACGTATTTGCTCAAAAGATGTTTTAAATAAAAAATTTTTCATATTCAGGAGTGAACGGTGTAGAAAAATCAGTATTATACAGAACTCCACATAATCATGATATCGGCAATAAAAAGATGGTATATGCATTGTATTACAAAGCAAATCCCTTAAGGGCTGTAGCTCTTAAGGGATTCTTTTCCGCAGGAAAACAGTTAGGACTAACACTTGTTAATTCCTTTCTGCACCTACACCTGCCAATATAAAACAATAACCAAAAACAAATCCTACCCTTCTAAGAAAAACAATTTAAAAAAATCTCTTCTTCCCAGATGCGATATCCTATTCCGGTTCCTGCATAAAAACCACCCGTGAAGCATACTCTCCACCCCTATGGATGCAGTTGTGTGCAACCCGTGTTTCCTCGCTGTTGAACCCATCTTTGGTATTTCTGTTAGGAAAGATGAAATTGCTGGCGCTGGAGGTTATGGTGACCCGCAGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //