Array 1 185104-189627 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIQ01000004.1 Rothia mucilaginosa strain UMB0024 .16933_8_62.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================================================== ================== 185104 35 100.0 38 ................................... GCTTCCGGGTTTTGGCTGAGTATGCTTACCAGCTGTCG 185177 35 100.0 42 ................................... GCCGCAGTCCACAAATCCAACGCCGCAACATCCAGAGGCGAG 185254 35 100.0 36 ................................... GTCCAACACTGCGGCGGCGGTATCCATCTGCTGCGC 185325 35 100.0 36 ................................... GCGCACTCATTGCCGCTGCCATCGGGCTGGGTGTGT 185396 35 100.0 37 ................................... GGATGGAGCGCTCTCACCTCCAGAGACGCACAAGCCC 185468 35 100.0 38 ................................... GCCACCAAGAATCGGGGTGGGATCCCAACGCTGTTTCC 185541 35 100.0 39 ................................... GGAGTGACTCAGAATATACACCTGACTTACTGAGTGCAA 185615 35 100.0 35 ................................... GTAATAATTTTGCTTATATGCACAGTAGCGCTAGT 185685 35 100.0 38 ................................... GACCGTCCTCTTCTTTTTTGTCATCGTGCTATCCTTTC 185758 35 100.0 36 ................................... GCAATCATCAGGCAGGTGAAGAGTAATGAGTTACGG 185829 35 100.0 39 ................................... GCGCCTCAGCTGAGACCTGGAGCGTGGCTTCGTCCTTGA 185903 35 100.0 42 ................................... GGCGGATTGAACGGCGCGCCGGTCCTGGGGTTGTGCATTGGG 185980 35 100.0 34 ................................... CTTGAAGGCTGGTGGAACAATCCTCAGGAGCAGC G [186013] 186050 35 100.0 37 ................................... CACACAGAAAGCAGGGGGAAGCCGGAACATTCCGGTT G [186083] 186123 35 100.0 39 ................................... GTGATAGGTGTATCGTGAGCTGACCACCCCCACCCCCGG 186197 35 100.0 37 ................................... GAGCAAATGCGGCGCTGAAATAAAAACCCGCTCACAT 186269 35 100.0 36 ................................... GTCAGGGCTGGAGGTGTTGTACACCTCGTAGATGGT G [186302] 186341 35 100.0 38 ................................... GTTGCCAGGCGTGGCGCGGCGCTGCCGAAGCAATCCGA 186414 35 100.0 36 ................................... GGGTAAGCGGTGGGGTGCTAACGAGGCGTCTTCAAT 186485 35 100.0 35 ................................... GGCTACCCGCCGGGCGCGTGTGAAAGACGAACGCG 186555 35 100.0 38 ................................... GGGTGATTGTCCCTGTCTGTATGCGGTTCCCGTCCGCG 186628 35 100.0 37 ................................... GCCGTAAATGGTCTTAGCCGGTAGCAATTTGCGGGTG 186700 35 100.0 35 ................................... CTCCAACCACAAGCAAAGGAAAACGTATCATGGAA G [186733] 186771 35 100.0 36 ................................... GTTTTGGAAGCGGTGAGGTATTTGCGCCAGGCGGGG 186842 35 100.0 35 ................................... GTTCCGTAGCGGTAACTACGTCTTTCTGCTGTTGC 186912 35 100.0 36 ................................... GAAAACCCCCGGTGAACTGTGGGATTCCACCGTGTG 186983 35 100.0 36 ................................... GAAAACCCCCGGTGAACTGTGGGATTCCACCGTGTG 187054 35 100.0 37 ................................... CATCTGGTGCACCAAGCGCTCATCACGTCCCACGAGG 187126 35 100.0 38 ................................... TGCACATCACGCTTACGAAGCTTAGAGATGACCTCCTG 187199 35 100.0 37 ................................... TTTACCAAAGACAAAAGCTGTCATTAGGGTACTCGTG 187271 35 100.0 36 ................................... TGGCACCGACCAGCACCGGCGGTACATGGTCTATCC 187342 35 100.0 37 ................................... GATTGTGGTGGTTGATTCGGTGATGTCGGTCCCGGTG 187414 35 100.0 39 ................................... GGGCATCAGCCTAAACGACGCCGCGCTCACGGCGAAGGG 187488 35 100.0 40 ................................... GGTATGGTCGCCTTCTTCCTTGGCCTTTTGGGCTTCTGGC 187563 35 100.0 38 ................................... GTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAG 187636 35 85.7 37 ...............T......G......A.A..A CAAGCTGTTGTGATGGCCCAGGATGACTGATAGACTG 187708 35 68.6 36 C..GTT..A.AGC..GA..T............... CTATCGAACACTGCCGGGCGGTCCATCGCCAAACGT TA [187728] 187781 35 88.6 35 ...............T..GA..G............ CCATGCCGCGTTCTGACCGGGGGAGTACCACAGCT 187851 35 80.0 36 .....T..G....CGG.TG................ CTATGGCAAGTCGTTCTATATCCACGGTCACAAAGA 187923 35 88.6 36 ...............G...A.TG............ TGAGTACAACCTGGTCGTTGAGGGCACTCCGGTTGA 187994 35 91.4 37 ...............T...A..G............ CGAAGATGCGGATTCGTTGGGGGTTGAGTCCGCCGCC 188066 35 91.4 37 ...............T...A..G............ CGGCTCTAGGAACGGCGAATCTACCGGCGGCTATCTC 188138 35 91.4 40 ...............T...A..G............ CAACGCGAAGCTGGCGGAGCACCTGGAGTCTGAGCTGGGG 188213 35 88.6 36 ...............T..GA..G............ CTCGCAACCTCGTGCGTGTAGTAGCGGAAGCCGTCA 188284 35 94.3 37 ...............T......G............ CGCAAGCCTTAACACTCATCACCCGGTGGTGGAGATC 188356 35 91.4 34 ...............T...A..G............ CTCGGACAGAATCACGCGGCCGTCCTCCTGCACG 188425 35 91.4 39 .............C.T......G............ GACCGGCCTTAACGTTGTCGGTGAGGGGTTCTTAGAGCG 188499 35 91.4 37 ......A............A..G............ CTATTTTGGCGGCGCGGCATACGCCCCGTATGGTAAC 188571 35 85.7 36 ........A.T.C.C..T................. CTATGGTGAGACGCTGGCGACCACCGCGGTTATCAC 188642 35 88.6 35 ..........T....T......G.....T...... CTGCCTGCGGCCTGTGTGGCCGACTGACCGACCGA T [188651] 188713 35 91.4 36 C..............T......G............ CGGCTTCGCCTTTGAAGAATTGAAGGGCGGCGACGG 188784 35 91.4 38 .............A...T....G............ CAATTGATGACGTGAAAGCTCACCCCGATAAGTACCAG 188857 35 94.3 41 ...................A..G............ CTTCCTCGAGCGCGTACAGGCTCACCGCAACGGCACCGCCA 188933 35 94.3 38 ...................A..G............ CTACGGTGCGCCGCATGTGATGCCGAGGTTGCAGGCGG 189006 35 88.6 37 .......A....C...A.....G............ CTCAAGGTACAGAAAAAGCGGTCCCGCGGTCATCTTG C [189040] 189079 35 91.4 110 ..........TA..........G............ CTCACCGTAATTCTCACCAGCCAGCACACGCACCGTATTTCTTCGCTTTCTAGCGGAGACTTTCATTGAGGTCCGCGTGTCAAGGTCAGTGACGCGACCCTGGCCGATGC 189224 35 91.4 41 ............G..T......G............ CTCGCCCATCACCTACACCTGGCCCGACTTCTACAACGGCG 189300 35 97.1 40 ......................G............ CTCGGTTGCCTGGCGTGCGTCGCCAACTTCGGTGATGACG 189375 35 91.4 37 ...............G...A..G............ CCCGTCGGCCACTTCGTGAATCTTCGTGATGCGTGAG 189447 35 88.6 37 ..........T....T....A.T............ TTACGACGGTGAGCACCGCCTGGACGGGATTGGTGTG T [189457] 189520 35 82.9 38 ........A.AG...T.T......C.......... CGGCGGGCTCATCCCTGCTTGCGCAGGAAACACCTCAA 189593 35 71.4 0 CC......A.GG.....T..........CC...CA | ========== ====== ====== ====== =================================== ============================================================================================================== ================== 62 35 95.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Left flank : TTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTCGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCTGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : ATATTTCTGCTCCGTTCCTGGACCCGCCACAGTCCAGGAACGGAGCTTTTCCTTTTCGCCGCGCAGGAAGCAACCAGGCTAAAACACCAACTGCAAACCCCACCCACCAGCTGCTGCCCGCCTCCTCCATGAACCCAAGTAGAAAAACTCAACACGCCGACCCTGCGTCATAAACTCGCTGATAAGCCAAAACACCCCGCCACAGTGCTACCCTCAAAACCAAGCAGCCAAAGCTGACTGCCCACCATACTCGCTCACACCAAGGAGACACCGATGTCTACCCCCTACAGTGCAGGCGACGAACTACCCATCTCACTCGTCATGCACACCGTGTACTGCCCCCGCCGCGCATGGATCGAATCCAACGGCGAAAAAACCGACACCTCACAAATGCAAGAAGGACAATCCGCCCACAAACGAGTCGACGACCCCAAAACATCCCGCGGCACGCAACAGCGCGCAGTCACCATCTCATCAACACGCCTCGGACTCACCGGACG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-73] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //